View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3231_low_24 (Length: 447)
Name: NF3231_low_24
Description: NF3231
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3231_low_24 |
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Alignment Details
Target: chr1 (Bit Score: 292; Significance: 1e-164; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 17 - 427
Target Start/End: Complemental strand, 25033904 - 25033488
Alignment:
| Q |
17 |
tctttgttgtcgattcaccgccgtttagttagggttttgttgtagctgattggtggnnnnnnnnnnatatggatttggtttcctgattcacttccaagtt |
116 |
Q |
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| T |
25033904 |
tctttgttgtcaattcgccaccgtttagttagggttttgttgtagccgattggtggttttttt---atctggatttggtttcctgattcacttccaagtc |
25033808 |
T |
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| Q |
117 |
tgttgaggcctgcatgttccaaagcttatatattggctataaatgacttgatttcttgtt-gtgatttatcgtatggtttgttggtatatgagttggttt |
215 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
25033807 |
tgttgaggcctgcatgttccaaagcttacatattggctataaatgacttgatttcttgtttgtgatttatcgtatggtttgttggtatatgagttggttt |
25033708 |
T |
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| Q |
216 |
gtgttgacaattggtttattcaccatctttgagatgtgaaggctaagacaatttatttttctatattgtttcatgtccatacactagttcgttggatatt |
315 |
Q |
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| T |
25033707 |
gtgttgacaattggtttattcgccatctttgagatgcgaaggctaagacaatttatttttctatattgtttcatgtccatacactagttcgttggatatt |
25033608 |
T |
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| Q |
316 |
gcctatggtgtgt--------gtgtttgcttcaattacttctaaactacttttgttgcatttggactatctgtatattcgttcggccttactatgagacc |
407 |
Q |
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| T |
25033607 |
gcctatggtgtgtgtgtgtgcgtgtttgcttcagttacttctaaaccacttttgttgcatctggactgtctgtatattcgttcggccttactatgagacc |
25033508 |
T |
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| Q |
408 |
caccatttattcctatatgt |
427 |
Q |
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|||||||||||| ||||||| |
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| T |
25033507 |
caccatttattcttatatgt |
25033488 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 17 - 72
Target Start/End: Complemental strand, 25142944 - 25142889
Alignment:
| Q |
17 |
tctttgttgtcgattcaccgccgtttagttagggttttgttgtagctgattggtgg |
72 |
Q |
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||||||||||| |||||||||||||||||||||| |||||||||| |||||||||| |
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| T |
25142944 |
tctttgttgtctattcaccgccgtttagttaggggtttgttgtagttgattggtgg |
25142889 |
T |
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