View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3231_low_25 (Length: 446)
Name: NF3231_low_25
Description: NF3231
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3231_low_25 |
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Alignment Details
Target: chr7 (Bit Score: 288; Significance: 1e-161; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 1 - 327
Target Start/End: Complemental strand, 10355160 - 10354838
Alignment:
| Q |
1 |
taattttatggtgaatcacaaattactaaaaaagaatcgttgatcattcaattttgaatcacttatcaaattatgactcttaaaccaatatcttcaccaa |
100 |
Q |
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| T |
10355160 |
taattttatggtgaatcacaaattactaaaaaagaatcgttgatcattcaattttgaatcacttatcaaattatgactcttaaaccaatatcttcaccaa |
10355061 |
T |
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| Q |
101 |
ttgaaactccaattaaattttttaaatctttaaaaaattcagatatttttctctttatggaaaagagaaattcatatttattaaatcagtcgttactcta |
200 |
Q |
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| T |
10355060 |
ttgaaactccaattaaattttttaaatctttaaaaaattcagatttttttctctttatggaaaacagaaattcagatttattaaatcagtcgttactcta |
10354961 |
T |
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| Q |
201 |
gtaaaagaaataaaataatccacttgtaactgagataacaaactgttttttaacctttataagaaaataaaacttaccaaaattgatactccaaa-tttt |
299 |
Q |
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| T |
10354960 |
gtaaaagaa-----ataatccacttgtaactgagataacaaactgttttttaacctttataagaaaataaaacttaccaaaattgatactccaaattttt |
10354866 |
T |
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| Q |
300 |
ttgcattagcagtttctcaagatgaggg |
327 |
Q |
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| T |
10354865 |
ttgcattagcagtttctcaagatgaggg |
10354838 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 402 - 439
Target Start/End: Complemental strand, 10354761 - 10354724
Alignment:
| Q |
402 |
cctaaccaatgtgtgtcacattctcacctcctatgcta |
439 |
Q |
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| T |
10354761 |
cctaaccaatgtgtgtcacattctcaccccttatgcta |
10354724 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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