View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3231_low_26 (Length: 435)

Name: NF3231_low_26
Description: NF3231
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3231_low_26
NF3231_low_26
[»] chr4 (6 HSPs)
chr4 (1-425)||(28787952-28788372)
chr4 (319-425)||(24856229-24856335)
chr4 (319-425)||(24853338-24853444)
chr4 (283-425)||(51246614-51246749)
chr4 (283-425)||(17525460-17525597)
chr4 (319-425)||(28787002-28787106)
[»] scaffold0406 (1 HSPs)
scaffold0406 (319-425)||(6272-6378)
[»] chr7 (1 HSPs)
chr7 (319-425)||(22622375-22622481)
[»] chr5 (5 HSPs)
chr5 (338-425)||(5046440-5046527)
chr5 (338-425)||(5047211-5047298)
chr5 (338-425)||(5047982-5048069)
chr5 (350-425)||(5663780-5663855)
chr5 (319-376)||(5664821-5664877)
[»] chr8 (1 HSPs)
chr8 (319-409)||(1275201-1275291)
[»] chr3 (3 HSPs)
chr3 (338-425)||(12738183-12738270)
chr3 (338-425)||(12739334-12739421)
chr3 (373-425)||(15023051-15023103)
[»] chr2 (2 HSPs)
chr2 (283-417)||(20978804-20978940)
chr2 (323-411)||(33798848-33798936)
[»] chr1 (4 HSPs)
chr1 (319-425)||(22055466-22055571)
chr1 (345-425)||(22056567-22056646)
chr1 (317-418)||(29371902-29372004)
chr1 (283-315)||(22056518-22056550)
[»] scaffold0272 (1 HSPs)
scaffold0272 (319-358)||(3559-3598)


Alignment Details
Target: chr4 (Bit Score: 357; Significance: 0; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 1 - 425
Target Start/End: Complemental strand, 28788372 - 28787952
Alignment:
Q  1 taataagattgaaatgaaatttttcacttaaatttcaaggtagcagtacaatttaaggtatacaatatgtcaatatctatctctagtaacaaccagtttt 100  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||| |||||||| ||||||    
T  28788372 taataagattgaaatgaaatttttcacttaaatttcaaagtagcagtacaatttaaggtatacaatatgttaatatctatctctggtaacaacgagtttt 28788273  T
Q  101 atggaaagcagcaagtacatacaagaaataaatagaagaaaacaagctgcatagtagacttctgttggnnnnnnnntaaaatatatatagcctagggagc 200  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||         || ||||||||||||||||||||    
T  28788272 atggaaagcaacaagtacatacaagaaataaatagaagaaaacaagctgcatagtagacttctgttggaaaaa----aatatatatatagcctagggagc 28788177  T
Q  201 tgtagtggtggagaggatagcttagggagctgtagtggtggagagaatagtagtaaggataagagtacacacattagaaattaggagagaatatcatatg 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||    
T  28788176 tgtagtggtggagaggatagcttagggagctgtagtggtggagagaatagtagtaaggataagaggacacacattagaaattaggagagaatatcatgtg 28788077  T
Q  301 gtgaagccttcaatattaaatattattgacattgcatcttaaaggcttgaatacaattgcacccatatatgtctatttataggtgtttgaaaatgtttct 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  28788076 gtgaagccttcaatattaaatattattgacattgcatcttaaaggcttgaatacaattgcacccatatatgtctatttataggtgtttgaagatgtttct 28787977  T
Q  401 agaactagaataatctaggcctttg 425  Q
    |||||||||||||||||||||||||    
T  28787976 agaactagaataatctaggcctttg 28787952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 319 - 425
Target Start/End: Complemental strand, 24856335 - 24856229
Alignment:
Q  319 aatattattgacattgcatcttaaaggcttgaatacaattgcacccatatatgtctatttataggtgtttgaaaatgtttctagaactagaataatctag 418  Q
    ||||||||||||||||||||||||||||| ||||||||||||| ||  ||| ||||||||||||||||| ||||||||||||||||||||||||||||||    
T  24856335 aatattattgacattgcatcttaaaggctggaatacaattgcatcctaataagtctatttataggtgttagaaaatgtttctagaactagaataatctag 24856236  T
Q  419 gcctttg 425  Q
    |||||||    
T  24856235 gcctttg 24856229  T

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Target: chr4; HSP #3
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 319 - 425
Target Start/End: Complemental strand, 24853444 - 24853338
Alignment:
Q  319 aatattattgacattgcatcttaaaggcttgaatacaattgcacccatatatgtctatttataggtgtttgaaaatgtttctagaactagaataatctag 418  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||| ||| ||||||||||||||||| ||| |||||| ||||||||||||||| |||    
T  24853444 aatattattgacattgcatcttaaaggcttgaatacaattgcatccaaataagtctatttataggtgttagaagatgtttttagaactagaataatttag 24853345  T
Q  419 gcctttg 425  Q
    |||||||    
T  24853344 gcctttg 24853338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 283 - 425
Target Start/End: Complemental strand, 51246749 - 51246614
Alignment:
Q  283 aggagagaatatcatatggtgaagccttcaatattaaatattattgacattgcatcttaaaggcttgaatacaattgcacccatatatgtctatttatag 382  Q
    |||||||||||| || ||||||||||||||||||||       |||||||| ||||  ||||||||||||||||||||||||||||| ||||| ||||||    
T  51246749 aggagagaatatgatttggtgaagccttcaatatta-------ttgacattacatcccaaaggcttgaatacaattgcacccatataagtctacttatag 51246657  T
Q  383 gtgtttgaaaatgtttctagaactagaataatctaggcctttg 425  Q
    ||| ||| | |||||||||||||||||||||||||||||||||    
T  51246656 gtgcttgtagatgtttctagaactagaataatctaggcctttg 51246614  T

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Target: chr4; HSP #5
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 283 - 425
Target Start/End: Original strand, 17525460 - 17525597
Alignment:
Q  283 aggagagaatatcatatggtgaagccttcaatattaaatattattgaca--ttgcatcttaaaggcttgaatacaattgcacccatatatgtctatttat 380  Q
    |||||||||||| |||||||||||||||||||||||       ||||||  |||||||| |||||||||||||||||| ||| |||||| ||||||||||    
T  17525460 aggagagaatatgatatggtgaagccttcaatatta-------ttgacacattgcatctcaaaggcttgaatacaatttcacacatataagtctatttat 17525552  T
Q  381 aggtgtttgaaaatgtttctagaactagaataatctaggcctttg 425  Q
    | | | ||| | |||||||||||||||||||||||||||||||||    
T  17525553 aagcgcttgtagatgtttctagaactagaataatctaggcctttg 17525597  T

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Target: chr4; HSP #6
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 319 - 425
Target Start/End: Complemental strand, 28787106 - 28787002
Alignment:
Q  319 aatattattgacattgcatcttaaaggcttgaatacaattgcacccatatatgtctatttataggtgtttgaaaatgtttctagaactagaataatctag 418  Q
    ||||||||  ||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||| ||||| ||||||||||||||  |||||| |||    
T  28787106 aatattatatacattgcatctaaaaggcttgaatacaattgcaccaatatatgtctatttataggtgcttgaagatgtttctagaact--aataatttag 28787009  T
Q  419 gcctttg 425  Q
    |||||||    
T  28787008 gcctttg 28787002  T

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Target: scaffold0406 (Bit Score: 83; Significance: 4e-39; HSPs: 1)
Name: scaffold0406
Description:

Target: scaffold0406; HSP #1
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 319 - 425
Target Start/End: Complemental strand, 6378 - 6272
Alignment:
Q  319 aatattattgacattgcatcttaaaggcttgaatacaattgcacccatatatgtctatttataggtgtttgaaaatgtttctagaactagaataatctag 418  Q
    ||||||||||||||||||||| |||||||||||||||||| |||||||||| ||||||||||||||| |||||  |||||||||||||||||||||||||    
T  6378 aatattattgacattgcatctcaaaggcttgaatacaatttcacccatataagtctatttataggtgcttgaagctgtttctagaactagaataatctag 6279  T
Q  419 gcctttg 425  Q
    |||||||    
T  6278 gcctttg 6272  T

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Target: chr7 (Bit Score: 67; Significance: 1e-29; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 319 - 425
Target Start/End: Original strand, 22622375 - 22622481
Alignment:
Q  319 aatattattgacattgcatcttaaaggcttgaatacaattgcacccatatatgtctatttataggtgtttgaaaatgtttctagaactagaataatctag 418  Q
    |||||||||||||| |||||| ||||||||||||||||||||||||||||| | ||||||||| |||  |||| |||||||||||| |||||||||||||    
T  22622375 aatattattgacatggcatctcaaaggcttgaatacaattgcacccatataagcctatttataagtgcctgaagatgtttctagaattagaataatctag 22622474  T
Q  419 gcctttg 425  Q
    | |||||    
T  22622475 gtctttg 22622481  T

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Target: chr5 (Bit Score: 64; Significance: 8e-28; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 338 - 425
Target Start/End: Complemental strand, 5046527 - 5046440
Alignment:
Q  338 cttaaaggcttgaatacaattgcacccatatatgtctatttataggtgtttgaaaatgtttctagaactagaataatctaggcctttg 425  Q
    ||||||||||||||||||||||||| |||||| ||||||||||||||| ||| | ||||||||| |||||||||||||||||||||||    
T  5046527 cttaaaggcttgaatacaattgcactcatataagtctatttataggtgcttgtagatgtttctaaaactagaataatctaggcctttg 5046440  T

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Target: chr5; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 338 - 425
Target Start/End: Complemental strand, 5047298 - 5047211
Alignment:
Q  338 cttaaaggcttgaatacaattgcacccatatatgtctatttataggtgtttgaaaatgtttctagaactagaataatctaggcctttg 425  Q
    ||||||||||||||||||||||||| |||||| || |||||||||||| ||| | ||||||||| |||||||||||||||||||||||    
T  5047298 cttaaaggcttgaatacaattgcactcatataagtatatttataggtgcttgtagatgtttctaaaactagaataatctaggcctttg 5047211  T

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Target: chr5; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 338 - 425
Target Start/End: Complemental strand, 5048069 - 5047982
Alignment:
Q  338 cttaaaggcttgaatacaattgcacccatatatgtctatttataggtgtttgaaaatgtttctagaactagaataatctaggcctttg 425  Q
    ||||||||||||||||||||||||| |||||| || |||||||||||| ||| | |||||| || |||||||||||||||||||||||    
T  5048069 cttaaaggcttgaatacaattgcactcatataagtatatttataggtgcttgtagatgtttttaaaactagaataatctaggcctttg 5047982  T

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Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 350 - 425
Target Start/End: Original strand, 5663780 - 5663855
Alignment:
Q  350 aatacaattgcacccatatatgtctatttataggtgtttgaaaatgtttctagaactagaataatctaggcctttg 425  Q
    |||||||| |||||||||||  |||||||||| ||| ||||| ||||||||| |||||||| | ||||||||||||    
T  5663780 aatacaatcgcacccatataattctatttataagtgattgaagatgtttctaaaactagaagagtctaggcctttg 5663855  T

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Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 319 - 376
Target Start/End: Original strand, 5664821 - 5664877
Alignment:
Q  319 aatattattgacattgcatcttaaaggcttgaatacaattgcacccatatatgtctat 376  Q
    |||||||||| ||||| || ||||| ||||||||||||||||||||||||| ||||||    
T  5664821 aatattattgtcattgtat-ttaaaagcttgaatacaattgcacccatataagtctat 5664877  T

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Target: chr8 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 319 - 409
Target Start/End: Original strand, 1275201 - 1275291
Alignment:
Q  319 aatattattgacattgcatcttaaaggcttgaatacaattgcacccatatatgtctatttataggtgtttgaaaatgtttctagaactaga 409  Q
    ||||||||||||||||||||||||| | |||||||||||||||||||||||  | || ||||||||| |||||  ||||||||||||||||    
T  1275201 aatattattgacattgcatcttaaacgtttgaatacaattgcacccatatacctatacttataggtgcttgaaggtgtttctagaactaga 1275291  T

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Target: chr3 (Bit Score: 52; Significance: 1e-20; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 338 - 425
Target Start/End: Complemental strand, 12738270 - 12738183
Alignment:
Q  338 cttaaaggcttgaatacaattgcacccatatatgtctatttataggtgtttgaaaatgtttctagaactagaataatctaggcctttg 425  Q
    |||||||||||||||||||||||||||| ||| || |||||||||||| ||| | ||||||||||||||| ||| |||||||| ||||    
T  12738270 cttaaaggcttgaatacaattgcacccaaataagtttatttataggtgcttgtagatgtttctagaactaaaattatctaggcttttg 12738183  T

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Target: chr3; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 338 - 425
Target Start/End: Complemental strand, 12739421 - 12739334
Alignment:
Q  338 cttaaaggcttgaatacaattgcacccatatatgtctatttataggtgtttgaaaatgtttctagaactagaataatctaggcctttg 425  Q
    |||||||||||||||||||||||| ||| |||  ||||||||||| || ||| | ||||||||||||||| |||||||||||| ||||    
T  12739421 cttaaaggcttgaatacaattgcatccaaataattctatttatagatgcttgtagatgtttctagaactaaaataatctaggcttttg 12739334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 373 - 425
Target Start/End: Complemental strand, 15023103 - 15023051
Alignment:
Q  373 ctatttataggtgtttgaaaatgtttctagaactagaataatctaggcctttg 425  Q
    ||||||||||||| ||| | ||||||||||||||| |||||||||||| ||||    
T  15023103 ctatttataggtgcttgtagatgtttctagaactaaaataatctaggcatttg 15023051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 49; Significance: 7e-19; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 283 - 417
Target Start/End: Original strand, 20978804 - 20978940
Alignment:
Q  283 aggagagaatatcatatggtgaagccttcaatattaaatattattgacattgcatct--------taaaggcttgaatacaattgcacccatatatgtct 374  Q
    |||||||||||| |||||||||||||||||||||||       ||||||||||||||        |||||||||||||| ||| ||||||||||| || |    
T  20978804 aggagagaatatgatatggtgaagccttcaatatta-------ttgacattgcatctcaaaggtttaaaggcttgaatataatggcacccatataagttt 20978896  T
Q  375 atttataggt-gtttgaaaatgtttctagaactagaataatcta 417  Q
    ||||||||||  |||| | |||||||||||||||||||||||||    
T  20978897 atttataggtactttgtagatgtttctagaactagaataatcta 20978940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 323 - 411
Target Start/End: Original strand, 33798848 - 33798936
Alignment:
Q  323 ttattgacattgcatcttaaaggcttgaatacaattgcacccatatatgtctatttataggtgtttgaaaatgtttctagaactagaat 411  Q
    |||||||| || ||||| ||||||||||||||||||||||  ||   | ||||||||||| |  ||||| |||||||||||| ||||||    
T  33798848 ttattgacgttacatctcaaaggcttgaatacaattgcacatatgcttatctatttatagatccttgaagatgtttctagaagtagaat 33798936  T

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Target: chr1 (Bit Score: 47; Significance: 1e-17; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 319 - 425
Target Start/End: Original strand, 22055466 - 22055571
Alignment:
Q  319 aatattattgacattgcatcttaaaggcttgaatacaattgcacccatatatgtctatttataggtgtttgaaaatgtttctagaactagaataatctag 418  Q
    |||||||| |||||||||||| |||||||||| ||||||||||||  |  | ||||||||||| ||| ||||| ||| ||||||||||| ||||||||||    
T  22055466 aatattatcgacattgcatctgaaaggcttgactacaattgcaccattcca-gtctatttataagtgcttgaagatgattctagaactaaaataatctag 22055564  T
Q  419 gcctttg 425  Q
    | |||||    
T  22055565 gtctttg 22055571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 345 - 425
Target Start/End: Original strand, 22056567 - 22056646
Alignment:
Q  345 gcttgaatacaattgcacccatatatgtctatttataggtgtttgaaaatgtttctagaactagaataatctaggcctttg 425  Q
    |||||||| ||||||||||  | || |||| |||||||||| ||||| || ||||||||||||||||||||||||| ||||    
T  22056567 gcttgaatgcaattgcaccttt-taagtctctttataggtgcttgaagatatttctagaactagaataatctaggcatttg 22056646  T

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Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 317 - 418
Target Start/End: Complemental strand, 29372004 - 29371902
Alignment:
Q  317 taaatattattgacattgcatcttaaaggcttgaatacaatt-gcacccatatatgtctatttataggtgtttgaaaatgtttctagaactagaataatc 415  Q
    ||||| || |||| |||| |||||||||||||  |||||||| |||||||||||  |||||||||| ||| ||||| |||||| ||  ||| ||||||||    
T  29372004 taaatgttcttgatattgtatcttaaaggcttacatacaatttgcacccatataaatctatttataagtgcttgaagatgtttataatacttgaataatc 29371905  T
Q  416 tag 418  Q
    |||    
T  29371904 tag 29371902  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 283 - 315
Target Start/End: Original strand, 22056518 - 22056550
Alignment:
Q  283 aggagagaatatcatatggtgaagccttcaata 315  Q
    |||||||||||| ||||||||||||||||||||    
T  22056518 aggagagaatataatatggtgaagccttcaata 22056550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0272 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0272
Description:

Target: scaffold0272; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 319 - 358
Target Start/End: Original strand, 3559 - 3598
Alignment:
Q  319 aatattattgacattgcatcttaaaggcttgaatacaatt 358  Q
    ||||||||||||||||||||| ||||| ||||||||||||    
T  3559 aatattattgacattgcatctcaaaggtttgaatacaatt 3598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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