View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3231_low_27 (Length: 419)

Name: NF3231_low_27
Description: NF3231
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3231_low_27
NF3231_low_27
[»] chr4 (13 HSPs)
chr4 (39-317)||(54300451-54300731)
chr4 (155-317)||(40975587-40975752)
chr4 (155-316)||(13570516-13570677)
chr4 (155-305)||(52182138-52182289)
chr4 (152-316)||(23542472-23542637)
chr4 (354-419)||(54300771-54300836)
chr4 (176-305)||(49358596-49358727)
chr4 (196-305)||(666576-666686)
chr4 (198-315)||(37355326-37355444)
chr4 (198-315)||(37367300-37367418)
chr4 (63-149)||(54287890-54287976)
chr4 (198-315)||(36753744-36753862)
chr4 (198-315)||(41374112-41374230)
[»] scaffold1487 (1 HSPs)
scaffold1487 (156-317)||(1044-1208)
[»] chr3 (5 HSPs)
chr3 (155-305)||(27902089-27902241)
chr3 (198-317)||(20649895-20650015)
chr3 (198-315)||(6037396-6037514)
chr3 (202-302)||(4591926-4592027)
chr3 (198-316)||(47442102-47442221)
[»] chr1 (11 HSPs)
chr1 (154-305)||(9317041-9317194)
chr1 (155-305)||(21818594-21818745)
chr1 (354-419)||(23252382-23252447)
chr1 (198-317)||(11912160-11912280)
chr1 (354-405)||(11912321-11912372)
chr1 (254-317)||(44917554-44917619)
chr1 (254-317)||(23252492-23252557)
chr1 (196-302)||(2823713-2823820)
chr1 (198-315)||(23761352-23761470)
chr1 (354-414)||(44917453-44917513)
chr1 (198-242)||(1175781-1175825)
[»] chr7 (3 HSPs)
chr7 (155-305)||(43365372-43365524)
chr7 (155-316)||(9704249-9704410)
chr7 (202-305)||(48456473-48456577)
[»] chr5 (8 HSPs)
chr5 (155-305)||(9334137-9334289)
chr5 (152-305)||(20900438-20900591)
chr5 (155-235)||(37336431-37336511)
chr5 (202-302)||(9844491-9844592)
chr5 (357-419)||(12504901-12504964)
chr5 (217-305)||(30579191-30579281)
chr5 (262-317)||(12504802-12504859)
chr5 (196-302)||(2153094-2153201)
[»] chr6 (4 HSPs)
chr6 (175-305)||(18766792-18766924)
chr6 (217-303)||(9847654-9847742)
chr6 (264-317)||(1166445-1166500)
chr6 (195-304)||(22871443-22871553)
[»] scaffold0265 (1 HSPs)
scaffold0265 (155-305)||(14064-14215)
[»] chr8 (7 HSPs)
chr8 (198-315)||(11357202-11357320)
chr8 (198-304)||(4973016-4973123)
chr8 (196-305)||(2267392-2267502)
chr8 (198-315)||(36020726-36020844)
chr8 (255-305)||(5063076-5063128)
chr8 (202-302)||(7932917-7933018)
chr8 (255-305)||(38658278-38658330)
[»] scaffold0012 (1 HSPs)
scaffold0012 (202-305)||(203106-203210)
[»] chr2 (4 HSPs)
chr2 (192-316)||(11908884-11909006)
chr2 (202-305)||(43670865-43670969)
chr2 (156-228)||(22196895-22196967)
chr2 (260-305)||(3363351-3363398)
[»] scaffold0510 (1 HSPs)
scaffold0510 (198-311)||(2142-2256)


Alignment Details
Target: chr4 (Bit Score: 238; Significance: 1e-131; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 39 - 317
Target Start/End: Original strand, 54300451 - 54300731
Alignment:
Q  39 caatggcgaaggatcaacgtctcattttcaaaacatgggatctgctcattcatccctgtcaccatcgtttaggattgagcgaggtgatccttctgccagt 138  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  54300451 caatggcgaaggatcaacatctcattttcaaaacatgggatctgctcattcatccctgtcaccatcgtttaggattgagccaggtgatccttctgccagt 54300550  T
Q  139 accttagatagcgcgctgataagtgccagaaagcagttaattccatgttacaattaagacacttttgttacttatcttacaagttatttagggaaaagct 238  Q
    |||||||||||| |||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||    
T  54300551 accttagatagcacgctgataagtgccagaaagtagttaattccatgttacaattaaggcacttttgttacttgtcttacaagttatttagggaaaagct 54300650  T
Q  239 gagaaaaagatggacaattgccctattacgctt--tatatcttactatacccctttgtgcaggaattgacctcaagacact 317  Q
    |||||||||||||||||||||||||||||||||  ||||||||||||||||| |||||| |||||||||||||||||||||    
T  54300651 gagaaaaagatggacaattgccctattacgctttatatatcttactatacccttttgtgtaggaattgacctcaagacact 54300731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 155 - 317
Target Start/End: Original strand, 40975587 - 40975752
Alignment:
Q  155 tgataagtgccagaaagcagttaattccatgttacaattaagacacttttgttacttatcttacaagttatttagggaaaagctgagaaaaagatggaca 254  Q
    ||||||||||||||||| |||||||| ||||||||||||||  |||||||||||||| ||||||||||||||||||||||| |  ||||||||||| |||    
T  40975587 tgataagtgccagaaagtagttaattacatgttacaattaaagcacttttgttacttgtcttacaagttatttagggaaaatccaagaaaaagatgaaca 40975686  T
Q  255 attgccctattacgc--tttatatcttactatacccctttgtgcaggaattg-acctcaagacact 317  Q
    |||  | |||||| |  ||||||||||||| || || ||||||||||||||| || ||||||||||    
T  40975687 attttcttattacactttttatatcttactctatccatttgtgcaggaattgaacgtcaagacact 40975752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 155 - 316
Target Start/End: Complemental strand, 13570677 - 13570516
Alignment:
Q  155 tgataagtgccagaaagcagttaattccatgttacaattaagacacttttgttacttatcttacaagttatttagggaaaagctgagaaaaagatggaca 254  Q
    |||||||| |||||||| |||||||| ||||||||| ||||| |||||||||||||| |||||||||||||||||| |||||| ||||||||||| ||      
T  13570677 tgataagttccagaaagtagttaatttcatgttacatttaaggcacttttgttacttgtcttacaagttatttaggaaaaagccgagaaaaagat-gatt 13570579  T
Q  255 attgccctattacgcttta--tatcttactatacccctttgtgcaggaattgacctcaagacac 316  Q
    |||||||||||||||||||  || |||||| ||||| |||||||| ||||||| || |||||||    
T  13570578 attgccctattacgctttatttaccttactctacccatttgtgca-gaattgaacttaagacac 13570516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 155 - 305
Target Start/End: Original strand, 52182138 - 52182289
Alignment:
Q  155 tgataagtgccagaaagcagttaattccatgttacaattaagacacttttgttacttatcttacaagttatttagggaaaagctgagaaaaagatggaca 254  Q
    ||||||||||||||||| |||||||  ||  ||||| ||||| |||||||||||||| ||||||||||||||||||||||||  ||||||||| || | |    
T  52182138 tgataagtgccagaaagtagttaatatcactttacatttaaggcacttttgttacttgtcttacaagttatttagggaaaagtcgagaaaaag-tgaata 52182236  T
Q  255 attgccctattacgc--tttatatcttactatacccctttgtgcaggaattga 305  Q
    |||||||||||||||  ||||||||||||| || || |||| ||| |||||||    
T  52182237 attgccctattacgctttttatatcttactctatccatttgcgcatgaattga 52182289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 152 - 316
Target Start/End: Original strand, 23542472 - 23542637
Alignment:
Q  152 cgctgataagtgccagaaagcagttaattccatgttacaattaagacacttttgttacttatcttacaagttatttagggaaaagctgagaaaaagatgg 251  Q
    ||||||||||||| |||||| ||||||||||||||| || ||||||||||| |||||||| | | ||||||||| ||||||||||| |||| ||| |  |    
T  23542472 cgctgataagtgcgagaaagtagttaattccatgtttcatttaagacacttctgttacttgtttcacaagttatctagggaaaagccgagagaaa-agtg 23542570  T
Q  252 acaattgccctattacgctt--tatatcttactatacccctttgtgcaggaattgacctcaagacac 316  Q
    | ||||||||||||||||||  | ||||||||| || |  |||||||| ||||||| ||||||||||    
T  23542571 ataattgccctattacgctttctttatcttactctatcaatttgtgcaagaattgaactcaagacac 23542637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 354 - 419
Target Start/End: Original strand, 54300771 - 54300836
Alignment:
Q  354 aagcatcaattcactcgcctccaactcgcaacggcgagtgctgaaaagcgagtagaggcaggaaga 419  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  54300771 aagcatcaattcactcgcctccaacttgcaacggcgagtgctgaaaagcgagtagaggcaggaaga 54300836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 176 - 305
Target Start/End: Original strand, 49358596 - 49358727
Alignment:
Q  176 taattccatgttacaattaagacacttttgttacttatcttacaagttatttagggaaaagctgagaaaaagatggacaattgccctattacgc--ttta 273  Q
    |||||| |||||||| ||||| ||||||||||| || |||||||||||||||||| ||||||  ||| |||  || | ||||| ||||||||||  ||||    
T  49358596 taattcaatgttacatttaaggcacttttgttatttgtcttacaagttatttaggaaaaagccaagagaaaagtgaataattgtcctattacgcttttta 49358695  T
Q  274 tatcttactatacccctttgtgcaggaattga 305  Q
    ||||||||| || || |||||| |||||||||    
T  49358696 tatcttactctatccatttgtgtaggaattga 49358727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 196 - 305
Target Start/End: Original strand, 666576 - 666686
Alignment:
Q  196 gacacttttgttacttatcttacaagttatttagggaaaagctgagaaaaagatggacaattgccctattacgctttat--atcttactatacccctttg 293  Q
    ||||| |||||||||||| | |||||||||| |||||||||| |||| |||  || |  |||| |||||||||||||||  |||||||| ||||| ||||    
T  666576 gacacgtttgttacttatttcacaagttattcagggaaaagccgagagaaaagtg-attattgacctattacgctttattcatcttactctacccatttg 666674  T
Q  294 tgcaggaattga 305  Q
    ||||||||||||    
T  666675 tgcaggaattga 666686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 198 - 315
Target Start/End: Original strand, 37355326 - 37355444
Alignment:
Q  198 cacttttgttacttatcttacaagttatttagggaaaagctgagaaaaagatggacaattgccctattacgcttta--tatcttactatacccctttgtg 295  Q
    |||||||||||||| | |||||||||||| |||||||||| |||||| | |  ||  |||||||| ||||||||||  |||||||||  |||| ||||||    
T  37355326 cacttttgttacttgttttacaagttattgagggaaaagccgagaaata-agtgattattgcccttttacgctttatctatcttacttcacccatttgtg 37355424  T
Q  296 caggaattgacctcaagaca 315  Q
    ||||| |||| |||||||||    
T  37355425 caggatttgaactcaagaca 37355444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 198 - 315
Target Start/End: Original strand, 37367300 - 37367418
Alignment:
Q  198 cacttttgttacttatcttacaagttatttagggaaaagctgagaaaaagatggacaattgccctattacgcttta--tatcttactatacccctttgtg 295  Q
    |||||||||||||| | |||||||||||| |||||||||| |||||| | |  ||  |||||||| ||||||||||  |||||||||  |||| ||||||    
T  37367300 cacttttgttacttgttttacaagttattgagggaaaagccgagaaata-agtgattattgcccttttacgctttatctatcttacttcacccatttgtg 37367398  T
Q  296 caggaattgacctcaagaca 315  Q
    ||||| |||| |||||||||    
T  37367399 caggatttgaactcaagaca 37367418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 63 - 149
Target Start/End: Original strand, 54287890 - 54287976
Alignment:
Q  63 ttttcaaaacatgggatctgctcattcatccctgtcaccatcgtttaggattgagcgaggtgatccttctgccagtaccttagatag 149  Q
    |||||| |||||||||||| |||||||||| ||||||||||| |||| || |||||   | ||||||||||| | ||||||||||||    
T  54287890 ttttcagaacatgggatctcctcattcatctctgtcaccatcatttacgactgagcacagcgatccttctgctattaccttagatag 54287976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 198 - 315
Target Start/End: Original strand, 36753744 - 36753862
Alignment:
Q  198 cacttttgttacttatcttacaagttatttagggaaaagctgagaaaaagatggacaattgccctattacgctttat--atcttactatacccctttgtg 295  Q
    |||||||||||||| | || ||||||||| |||||||||| |||| | |  || |  |||||||| |||||||||||  |||||||| ||||| ||||||    
T  36753744 cacttttgttacttgttttgcaagttattgagggaaaagccgagagataagtg-attattgcccttttacgctttatctatcttactttacccatttgtg 36753842  T
Q  296 caggaattgacctcaagaca 315  Q
    ||||| |||| |||||||||    
T  36753843 caggatttgaactcaagaca 36753862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 198 - 315
Target Start/End: Complemental strand, 41374230 - 41374112
Alignment:
Q  198 cacttttgttacttatcttacaagttatttagggaaaagctgagaaaaagatggacaattgccctattacgcttta--tatcttactatacccctttgtg 295  Q
    |||||||||||||| | || ||||||||| ||||||||||||||||| | |  ||  |||||||| ||||||||||  |||||||||  |||| ||||||    
T  41374230 cacttttgttacttgttttgcaagttattaagggaaaagctgagaaata-agtgattattgcccttttacgctttatctatcttacttcacccatttgtg 41374132  T
Q  296 caggaattgacctcaagaca 315  Q
    ||||| | || |||||||||    
T  41374131 caggattcgaactcaagaca 41374112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1487 (Bit Score: 98; Significance: 4e-48; HSPs: 1)
Name: scaffold1487
Description:

Target: scaffold1487; HSP #1
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 156 - 317
Target Start/End: Original strand, 1044 - 1208
Alignment:
Q  156 gataagtgccagaaagcagttaattccatgttacaattaagacacttttgttacttatcttacaagttatttagggaaaagctgagaaaaagatggacaa 255  Q
    |||||||||||||||| |||||||| ||||||||||||||  |||||||||||||| ||||| ||||||||||||||||||| |||||||||||| ||||    
T  1044 gataagtgccagaaagtagttaattacatgttacaattaaagcacttttgttacttgtcttaaaagttatttagggaaaagccgagaaaaagatgaacaa 1143  T
Q  256 ttgccctattacgc--tttatatcttactatacccctttgtgcaggaattg-acctcaagacact 317  Q
    ||||||||||||||  ||||||||||||| || || ||||||||||||||| || ||||||||||    
T  1144 ttgccctattacgctttttatatcttactctatccatttgtgcaggaattgaacgtcaagacact 1208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 90; Significance: 2e-43; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 155 - 305
Target Start/End: Complemental strand, 27902241 - 27902089
Alignment:
Q  155 tgataagtgccagaaagcagttaattccatgttacaattaagacacttttgttacttatcttacaagttatttagggaaaagctgagaaaaagatggaca 254  Q
    ||||||||||||||||| |||||||| ||||||||| ||||| |||||||||||||| |||||||||| | |||||||||||| |||||||||||| |||    
T  27902241 tgataagtgccagaaagtagttaatttcatgttacatttaaggcacttttgttacttgtcttacaagtaagttagggaaaagccgagaaaaagatgaaca 27902142  T
Q  255 attgccctattacgc--tttatatcttactatacccctttgtgcaggaattga 305  Q
    ||||| |||||||||  ||||||||||||| || || ||||||||||||||||    
T  27902141 attgcgctattacgctttttatatcttactctatccatttgtgcaggaattga 27902089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 198 - 317
Target Start/End: Original strand, 20649895 - 20650015
Alignment:
Q  198 cacttttgttacttatcttacaagttatttagggaaaagctgagaaaaagatggacaattgccctattacgctttat--atcttactatacccctttgtg 295  Q
    |||||||||||||| | |||||||||||| ||||||||||||||| | |  || |  |||||||| |||||||||||  |||||||| ||||| ||||||    
T  20649895 cacttttgttacttgttttacaagttattgagggaaaagctgagagataagtg-attattgcccttttacgctttatctatcttactttacccatttgtg 20649993  T
Q  296 caggaattgacctcaagacact 317  Q
    || ||||||| |||||||||||    
T  20649994 caagaattgaactcaagacact 20650015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 198 - 315
Target Start/End: Complemental strand, 6037514 - 6037396
Alignment:
Q  198 cacttttgttacttatcttacaagttatttagggaaaagctgagaaaaagatggacaattgccctattacgcttta--tatcttactatacccctttgtg 295  Q
    |||||||||||||| | || ||||||||| ||||||||||||||||| | |  ||  |||||||| ||||||||||  |||||||||  |||| ||||||    
T  6037514 cacttttgttacttgttttgcaagttattaagggaaaagctgagaaata-agtgattattgcccttttacgctttatctatcttacttcacccatttgtg 6037416  T
Q  296 caggaattgacctcaagaca 315  Q
    ||||| |||| |||||||||    
T  6037415 caggatttgaactcaagaca 6037396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 202 - 302
Target Start/End: Complemental strand, 4592027 - 4591926
Alignment:
Q  202 tttgttacttatcttacaagttatttagggaaaagctgagaaaaagatggacaattgccctattacgcttta--tatcttactatacccctttgtgcagg 299  Q
    |||||||||| | ||||||||||| ||||||||||| |||| ||| |||||   ||| ||||||||||||||   |||||||| ||||| ||||||||||    
T  4592027 tttgttacttgttttacaagttatctagggaaaagccgagagaaa-atggaattttgacctattacgctttagtcatcttactctacccatttgtgcagg 4591929  T
Q  300 aat 302  Q
    |||    
T  4591928 aat 4591926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 198 - 316
Target Start/End: Complemental strand, 47442221 - 47442102
Alignment:
Q  198 cacttttgttacttatcttacaagttatttagggaaaagctgagaaaaagatggacaattgccctattacgcttta--tatcttactatacccctttgtg 295  Q
    |||||||||||||| | || ||||||||| |||||||||| |||| | |  || |  ||| |||| ||||||||||  ||||||||||| ||| ||||||    
T  47442221 cacttttgttacttgttttgcaagttattgagggaaaagccgagagataagtg-attattacccttttacgctttagatatcttactatgcccatttgtg 47442123  T
Q  296 caggaattgacctcaagacac 316  Q
    ||||| |||| ||||||||||    
T  47442122 caggatttgaactcaagacac 47442102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 83; Significance: 3e-39; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 154 - 305
Target Start/End: Complemental strand, 9317194 - 9317041
Alignment:
Q  154 ctgataagtgccagaaagcagttaattccatgttacaattaagacacttttgttacttatcttacaagttatttagggaaaagctgagaaaaagatggac 253  Q
    |||||||||||||||||| |||||||| ||||||||| ||||| || ||||||||||| |||||||||||| |||||||||||  |||||||||||| ||    
T  9317194 ctgataagtgccagaaagtagttaatttcatgttacatttaaggcagttttgttacttgtcttacaagttagttagggaaaagtcgagaaaaagatgaac 9317095  T
Q  254 aattgccctattacgc--tttatatcttactatacccctttgtgcaggaattga 305  Q
    |||||||||| || ||  ||||||||||||| || || ||||||||||||||||    
T  9317094 aattgccctactatgctttttatatcttactctatccatttgtgcaggaattga 9317041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 155 - 305
Target Start/End: Complemental strand, 21818745 - 21818594
Alignment:
Q  155 tgataagtgccagaaagcagttaattccatgttacaattaagacacttttgttacttatcttacaagttatttagggaaaagctgagaaaaagatggaca 254  Q
    |||||||||||| |||| |||| |||| |||||  | ||| | ||| |||||||||| | | ||||||||||||||||||||| |||| |||  || | |    
T  21818745 tgataagtgccaaaaagtagtttattcaatgttt-atttacgtcacatttgttacttgtttcacaagttatttagggaaaagccgagagaaaagtg-ata 21818648  T
Q  255 attgccctattacgcttt---atatcttactatacccctttgtgcaggaattga 305  Q
    ||||||||||||||||||   |||||||||| ||||| ||||||||||||||||    
T  21818647 attgccctattacgcttttttatatcttactctacccatttgtgcaggaattga 21818594  T

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Target: chr1; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 354 - 419
Target Start/End: Complemental strand, 23252447 - 23252382
Alignment:
Q  354 aagcatcaattcactcgcctccaactcgcaacggcgagtgctgaaaagcgagtagaggcaggaaga 419  Q
    |||||||||||||||||||| |||||||||  |||||||||||||||||||| |||||||| ||||    
T  23252447 aagcatcaattcactcgccttcaactcgcagtggcgagtgctgaaaagcgagcagaggcagaaaga 23252382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 198 - 317
Target Start/End: Original strand, 11912160 - 11912280
Alignment:
Q  198 cacttttgttacttatcttacaagttatttagggaaaagctgagaaaaagatggacaattgccctattacgctttata--tcttactatacccctttgtg 295  Q
    |||||||||||||| | || ||||||||| |||||||||| |||| | |  ||   ||||||||||||||||||||||  ||||||| ||||| ||| ||    
T  11912160 cacttttgttacttgttttgcaagttattgagggaaaagccgagagataagtgtt-aattgccctattacgctttatatatcttactctacccttttatg 11912258  T
Q  296 caggaattgacctcaagacact 317  Q
    |||||||| |||||||||||||    
T  11912259 caggaattaacctcaagacact 11912280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 354 - 405
Target Start/End: Original strand, 11912321 - 11912372
Alignment:
Q  354 aagcatcaattcactcgcctccaactcgcaacggcgagtgctgaaaagcgag 405  Q
    |||||||||||||||||||| |||||||||| |||||||||||||| |||||    
T  11912321 aagcatcaattcactcgccttcaactcgcaatggcgagtgctgaaaggcgag 11912372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 254 - 317
Target Start/End: Complemental strand, 44917619 - 44917554
Alignment:
Q  254 aattgccctattacgctttatat--cttactatacccctttgtgcaggaattgacctcaagacact 317  Q
    |||||||||||||||||||||||  |||||| ||||| ||||||||||||||  ||||||||||||    
T  44917619 aattgccctattacgctttatatatcttactctacccttttgtgcaggaattagcctcaagacact 44917554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 254 - 317
Target Start/End: Complemental strand, 23252557 - 23252492
Alignment:
Q  254 aattgccctattacgctttatat--cttactatacccctttgtgcaggaattgacctcaagacact 317  Q
    |||||||||||||| ||||||||  |||||| ||||| ||| |||||||||| |||||||||||||    
T  23252557 aattgccctattacactttatatatcttactctacccttttatgcaggaattaacctcaagacact 23252492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 196 - 302
Target Start/End: Original strand, 2823713 - 2823820
Alignment:
Q  196 gacacttttgttacttatcttacaagttatttagggaaaagctgagaaaaagatggacaattgccctattacgctttat--atcttactatacccctttg 293  Q
    ||||| |||||||||| | ||||||| ||| ||||||||||| |||| ||| | |||   ||| ||||||||||||||   |||||||||||||| ||||    
T  2823713 gacacatttgttacttgttttacaagctatctagggaaaagccgagagaaa-agggaattttgacctattacgctttaatcatcttactatacccatttg 2823811  T
Q  294 tgcaggaat 302  Q
    |||||||||    
T  2823812 tgcaggaat 2823820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 198 - 315
Target Start/End: Original strand, 23761352 - 23761470
Alignment:
Q  198 cacttttgttacttatcttacaagttatttagggaaaagctgagaaaaagatggacaattgccctattacgcttta--tatcttactatacccctttgtg 295  Q
    |||||||||||||| | || ||||||||| ||||||||||||||| | | || ||  |||||||| ||||||||||  |||||||||  | || |||| |    
T  23761352 cacttttgttacttgttttgcaagttattgagggaaaagctgagagataaat-gattattgcccttttacgctttatttatcttacttcatccatttgag 23761450  T
Q  296 caggaattgacctcaagaca 315  Q
    ||||| |||| |||||||||    
T  23761451 caggatttgaactcaagaca 23761470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 354 - 414
Target Start/End: Complemental strand, 44917513 - 44917453
Alignment:
Q  354 aagcatcaattcactcgcctccaactcgcaacggcgagtgctgaaaagcgagtagaggcag 414  Q
    ||||||||||||||||| ||| ||||||||  |||||||||| |||||| || ||||||||    
T  44917513 aagcatcaattcactcgtctctaactcgcagtggcgagtgcttaaaagctagcagaggcag 44917453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 198 - 242
Target Start/End: Complemental strand, 1175825 - 1175781
Alignment:
Q  198 cacttttgttacttatcttacaagttatttagggaaaagctgaga 242  Q
    |||||||||||||| | || ||||||||| |||||||||||||||    
T  1175825 cacttttgttacttgttttgcaagttattaagggaaaagctgaga 1175781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 82; Significance: 1e-38; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 155 - 305
Target Start/End: Complemental strand, 43365524 - 43365372
Alignment:
Q  155 tgataagtgccagaaagcagttaattccatgttacaattaagacacttttgttacttatcttacaagttatttagggaaaagctgagaaaaagatggaca 254  Q
    |||||| ||| |||||| |||||||| ||||| ||| ||||| ||||||||||||||||||||||||||| |||||||||| | |||||||||||| |||    
T  43365524 tgataaatgctagaaagtagttaatttcatgtgacatttaaggcacttttgttacttatcttacaagttagttagggaaaaaccgagaaaaagatgaaca 43365425  T
Q  255 attgccctattacgc--tttatatcttactatacccctttgtgcaggaattga 305  Q
    |||||||||||||||  |||| |||||||| || || ||||||||||||||||    
T  43365424 attgccctattacgctttttacatcttactctatccatttgtgcaggaattga 43365372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 155 - 316
Target Start/End: Complemental strand, 9704410 - 9704249
Alignment:
Q  155 tgataagtgccagaaagcagttaattccatgttacaattaagacacttttgttacttatcttacaagttatttagggaaaagctgagaaaaagatggaca 254  Q
    |||||||| |||||||| |||||||| ||||||||| ||||| |||||||||||||| |||||||||||||||||| |||||| ||||||||||| ||      
T  9704410 tgataagttccagaaagtagttaatttcatgttacatttaaggcacttttgttacttgtcttacaagttatttaggaaaaagccgagaaaaagat-gatt 9704312  T
Q  255 attgccctattacgcttta--tatcttactatacccctttgtgcaggaattgacctcaagacac 316  Q
    |||||||||||||||||||  || |||||| ||||| |||||||| ||||||| || |||||||    
T  9704311 attgccctattacgctttatttaccttactctacccatttgtgca-gaattgaacttaagacac 9704249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 202 - 305
Target Start/End: Complemental strand, 48456577 - 48456473
Alignment:
Q  202 tttgttacttatcttacaagttatttagggaaaagctgagaaaaagatggacaattgccctattacgctttat--atcttactatacccctttgtgcagg 299  Q
    |||||||||| | | |||||||||| ||| |||||| |||| |||  || |  |||| |||||||||||||||  |||||||| ||||| ||||||||||    
T  48456577 tttgttacttgtttcacaagttattcaggaaaaagccgagagaaaagtg-attattgacctattacgctttattcatcttactctacccatttgtgcagg 48456479  T
Q  300 aattga 305  Q
    ||||||    
T  48456478 aattga 48456473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 82; Significance: 1e-38; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 155 - 305
Target Start/End: Original strand, 9334137 - 9334289
Alignment:
Q  155 tgataagtgccagaaagcagttaattccatgttacaattaagacacttttgttacttatcttacaagttatttagggaaaagctgagaaaaagatggaca 254  Q
    ||||||||||||||||| |||||||  ||||||||| ||||| ||| |||||||||| |||||||||||| |||||||||||  |||||||||||| | |    
T  9334137 tgataagtgccagaaagtagttaatatcatgttacatttaaggcacatttgttacttgtcttacaagttagttagggaaaaggcgagaaaaagatgaaaa 9334236  T
Q  255 attgccctattacgc--tttatatcttactatacccctttgtgcaggaattga 305  Q
    |||||||||||||||  ||||||||||||| || || ||||||||||||||||    
T  9334237 attgccctattacgctttttatatcttactctatccatttgtgcaggaattga 9334289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 152 - 305
Target Start/End: Complemental strand, 20900591 - 20900438
Alignment:
Q  152 cgctgataagtgccagaaagcagttaattccatgttacaattaagacacttttgttacttatcttacaagttatttagggaaaagctgagaaaaagatgg 251  Q
    ||||||||||||||| |||| ||||||||| |||||  | ||| |  || |||||||||| | | ||||||||| ||||||||||| |||| |||  ||     
T  20900591 cgctgataagtgccaaaaagtagttaattcaatgttt-atttatggtacgtttgttacttgtttcacaagttatgtagggaaaagccgagagaaaagtg- 20900494  T
Q  252 acaattgccctattacgcttt--atatcttactatacccctttgtgcaggaattga 305  Q
    | |||||||||||||||||||  |||||||||| ||||| |||||| |||||||||    
T  20900493 ataattgccctattacgctttttatatcttactctacccatttgtgtaggaattga 20900438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 155 - 235
Target Start/End: Complemental strand, 37336511 - 37336431
Alignment:
Q  155 tgataagtgccagaaagcagttaattccatgttacaattaagacacttttgttacttatcttacaagttatttagggaaaa 235  Q
    |||||||||  |||||| |||||| | ||||||| | ||||| |||||||||||||| | |||||||||||||| ||||||    
T  37336511 tgataagtgttagaaagtagttaaattcatgttatatttaaggcacttttgttacttgttttacaagttatttaaggaaaa 37336431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 202 - 302
Target Start/End: Complemental strand, 9844592 - 9844491
Alignment:
Q  202 tttgttacttatcttacaagttatttagggaaaagctgagaaaaagatggacaattgccctattacgcttta--tatcttactatacccctttgtgcagg 299  Q
    |||||||||| | ||||||||||| ||||||||||| |||| ||| |||||   ||| ||||||||||||||   |||||||| ||||| ||||||||||    
T  9844592 tttgttacttgttttacaagttatctagggaaaagccgagagaaa-atggaattttgacctattacgctttagtcatcttactctacccatttgtgcagg 9844494  T
Q  300 aat 302  Q
    |||    
T  9844493 aat 9844491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 357 - 419
Target Start/End: Original strand, 12504901 - 12504964
Alignment:
Q  357 catcaattcactcgcctccaactcgcaacggcgagtgctg-aaaagcgagtagaggcaggaaga 419  Q
    |||||||||||||||| |||| ||||||||||||| || | ||||||||| |||||||||||||    
T  12504901 catcaattcactcgccaccaattcgcaacggcgagagcagcaaaagcgagcagaggcaggaaga 12504964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 217 - 305
Target Start/End: Original strand, 30579191 - 30579281
Alignment:
Q  217 acaagttatttagggaaaagctgagaaaaagatggacaattgccctattacgcttta--tatcttactatacccctttgtgcaggaattga 305  Q
    ||||||||||||||||||||| |||| |||  || | ||||||||||||||| ||||  ||||||||| ||  | ||||||||||||||||    
T  30579191 acaagttatttagggaaaagccgagagaaaagtgaataattgccctattacgttttatgtatcttactttattcatttgtgcaggaattga 30579281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 262 - 317
Target Start/End: Original strand, 12504802 - 12504859
Alignment:
Q  262 tattacgctttata--tcttactatacccctttgtgcaggaattgacctcaagacact 317  Q
    ||||||||||||||  ||||||| ||||| |||||||| |||||||||||||||||||    
T  12504802 tattacgctttatatatcttactctacccttttgtgcatgaattgacctcaagacact 12504859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 196 - 302
Target Start/End: Original strand, 2153094 - 2153201
Alignment:
Q  196 gacacttttgttacttatcttacaagttatttagggaaaagctgagaaaaagatggacaattgccctattacgcttta--tatcttactatacccctttg 293  Q
    ||||| |||||||||| | ||||||||||| ||||||||||| |||| ||| | |||   ||| ||||||||||||||   |||||||| ||||| ||||    
T  2153094 gacacgtttgttacttgttttacaagttatctagggaaaagccgagagaaa-agggaattttgacctattacgctttagtcatcttactctacccatttg 2153192  T
Q  294 tgcaggaat 302  Q
    |||||||||    
T  2153193 tgcaggaat 2153201  T

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Target: chr6 (Bit Score: 74; Significance: 8e-34; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 175 - 305
Target Start/End: Complemental strand, 18766924 - 18766792
Alignment:
Q  175 ttaattccatgttacaattaagacacttttgttacttatcttacaagttatttagggaaaagctgagaaaaagatggacaattgccctattacgc--ttt 272  Q
    |||||| ||||||||| ||||| |||||||||||||| |||||||||||| |||||||||||  |||||||||||| ||||||||||||||| ||  |||    
T  18766924 ttaatttcatgttacatttaaggcacttttgttacttgtcttacaagttagttagggaaaagtcgagaaaaagatgaacaattgccctattatgcttttt 18766825  T
Q  273 atatcttactatacccctttgtgcaggaattga 305  Q
    |||||||||| || || ||||||||||||||||    
T  18766824 atatcttactctatccatttgtgcaggaattga 18766792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 217 - 303
Target Start/End: Complemental strand, 9847742 - 9847654
Alignment:
Q  217 acaagttatttagggaaaagctgagaaaaagatggacaattgccctattacgctt--tatatcttactatacccctttgtgcaggaatt 303  Q
    ||||||||||||||||||||| |||| |||  || | |||||||||||||| |||  ||||||||||| || || |||||| |||||||    
T  9847742 acaagttatttagggaaaagccgagataaaagtgaataattgccctattacactttatatatcttactttatccatttgtggaggaatt 9847654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 264 - 317
Target Start/End: Original strand, 1166445 - 1166500
Alignment:
Q  264 ttacgctttat--atcttactatacccctttgtgcaggaattgacctcaagacact 317  Q
    |||||||||||  |||||||| ||||| ||| |||||||||||| |||||||||||    
T  1166445 ttacgctttatctatcttactttacccatttatgcaggaattgaactcaagacact 1166500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 195 - 304
Target Start/End: Complemental strand, 22871553 - 22871443
Alignment:
Q  195 agacacttttgttacttatcttacaagttatttagggaaaagctgagaaaaagatggacaattgccctattacgcttt--atatcttactataccccttt 292  Q
    ||||||||||||||||| | ||||||||||| | | |||||||| |||||| | |  |||| |||||||||| |||||   || |||||| ||||| |||    
T  22871553 agacacttttgttacttgttttacaagttatctcgagaaaagctaagaaaatg-taaacaaatgccctattatgcttttactaccttactctacccattt 22871455  T
Q  293 gtgcaggaattg 304  Q
    ||||| ||||||    
T  22871454 gtgcatgaattg 22871443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0265 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: scaffold0265
Description:

Target: scaffold0265; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 155 - 305
Target Start/End: Original strand, 14064 - 14215
Alignment:
Q  155 tgataagtgccagaaagcagttaattccatgttacaattaagacacttttgttacttatcttacaagttatttagggaaaagctgagaaaaagatggaca 254  Q
    |||||||||||| |||| |||| |||| |||||  | ||| | ||| |||||||||| | | ||||||||||||||||||||| |||| |||  || | |    
T  14064 tgataagtgccaaaaagtagtttattcaatgttt-atttacgtcacatttgttacttgtttcacaagttatttagggaaaagccgagagaaaagtg-ata 14161  T
Q  255 attgccctattacgcttt---atatcttactatacccctttgtgcaggaattga 305  Q
    ||||||||||||||||||   |||||||||| ||||| ||||||||||||||||    
T  14162 attgccctattacgcttttttatatcttactctacccatttgtgcaggaattga 14215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 198 - 315
Target Start/End: Original strand, 11357202 - 11357320
Alignment:
Q  198 cacttttgttacttatcttacaagttatttagggaaaagctgagaaaaagatggacaattgccctattacgcttta--tatcttactatacccctttgtg 295  Q
    |||||||||||||| | |||||||||||| |||||||||| |||||| | |  ||  |||||||| ||||||||||  |||||||||  |||| ||||||    
T  11357202 cacttttgttacttgttttacaagttattgagggaaaagccgagaaata-agtgattattgcccttttacgctttatctatcttacttcacccatttgtg 11357300  T
Q  296 caggaattgacctcaagaca 315  Q
    ||||| |||| |||||||||    
T  11357301 caggatttgaactcaagaca 11357320  T

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Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 198 - 304
Target Start/End: Complemental strand, 4973123 - 4973016
Alignment:
Q  198 cacttttgttacttatcttacaagttatttagggaaaagctgagaaaaagatggacaattgccctattacgc--tttatatcttactatacccctttgtg 295  Q
    |||||||||||||| | ||||||||||| |||||||||||  |||||| | || |||| || ||||||| ||  ||||||||||||| |||||| ||||     
T  4973123 cacttttgttacttgttttacaagttatctagggaaaagccaagaaaatg-tgaacaaatgtcctattatgctttttatatcttactctaccccattgta 4973025  T
Q  296 caggaattg 304  Q
    |||||||||    
T  4973024 caggaattg 4973016  T

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Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 196 - 305
Target Start/End: Original strand, 2267392 - 2267502
Alignment:
Q  196 gacacttttgttacttatcttacaagttatttagggaaaagctgagaaaaagatggacaattgccctattacgctttat--atcttactatacccctttg 293  Q
    ||||| |||||||||||| | |||||||||| ||| |||||| |||| |||  || |  |||| |||||||||||||||  |||||||| ||||| ||||    
T  2267392 gacacgtttgttacttatttcacaagttattcaggaaaaagccgagagaaaagtg-attattgacctattacgctttattcatcttactctacccatttg 2267490  T
Q  294 tgcaggaattga 305  Q
    ||||||||||||    
T  2267491 tgcaggaattga 2267502  T

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Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 198 - 315
Target Start/End: Original strand, 36020726 - 36020844
Alignment:
Q  198 cacttttgttacttatcttacaagttatttagggaaaagctgagaaaaagatggacaattgccctattacgcttta--tatcttactatacccctttgtg 295  Q
    |||||||||||||| | || ||||||||| ||||||||||||||||| | |  ||  |||||||| ||||||||||  |||||||||  |||| ||||||    
T  36020726 cacttttgttacttgttttgcaagttattaagggaaaagctgagaaata-agtgattattgcccttttacgctttatctatcttacttcacccatttgtg 36020824  T
Q  296 caggaattgacctcaagaca 315  Q
    ||||| | || |||||||||    
T  36020825 caggattcgaactcaagaca 36020844  T

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Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 255 - 305
Target Start/End: Original strand, 5063076 - 5063128
Alignment:
Q  255 attgccctattacgctttat--atcttactatacccctttgtgcaggaattga 305  Q
    |||| |||||||||||||||  |||||||||||||| ||||||||||||||||    
T  5063076 attgacctattacgctttattcatcttactatacccatttgtgcaggaattga 5063128  T

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Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 202 - 302
Target Start/End: Original strand, 7932917 - 7933018
Alignment:
Q  202 tttgttacttatcttacaagttatttagggaaaagctgagaaaaagatggacaattgccctattacgcttta--tatcttactatacccctttgtgcagg 299  Q
    ||||| |||| | ||||||||||| ||||||||||| |||| ||| |||||   ||| ||||||||||||||   |||||||| ||||| ||||||||||    
T  7932917 tttgtaacttgttttacaagttatctagggaaaagccgagagaaa-atggaattttgacctattacgctttagtcatcttactctacccatttgtgcagg 7933015  T
Q  300 aat 302  Q
    |||    
T  7933016 aat 7933018  T

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Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 255 - 305
Target Start/End: Complemental strand, 38658330 - 38658278
Alignment:
Q  255 attgccctattacgctttat--atcttactatacccctttgtgcaggaattga 305  Q
    |||| |||||||||||||||  |||||||| ||||| ||||||||||||||||    
T  38658330 attgacctattacgctttattcatcttactctacccatttgtgcaggaattga 38658278  T

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Target: scaffold0012 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 202 - 305
Target Start/End: Complemental strand, 203210 - 203106
Alignment:
Q  202 tttgttacttatcttacaagttatttagggaaaagctgagaaaaagatggacaattgccctattacgctttat--atcttactatacccctttgtgcagg 299  Q
    |||||||||| | | |||||||||| |||||||||| |||| ||| ||| |  |||| |||||||||||||||  || ||||| ||||| ||||||||||    
T  203210 tttgttacttgtttcacaagttattcagggaaaagccgagagaaaaatg-attattgacctattacgctttattcatattactctacccatttgtgcagg 203112  T
Q  300 aattga 305  Q
    ||||||    
T  203111 aattga 203106  T

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Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 192 - 316
Target Start/End: Original strand, 11908884 - 11909006
Alignment:
Q  192 ttaagacacttttgttacttatcttacaagttatttagggaaaagctgagaaaaagatggacaattgccctattacgctttat--atcttactatacccc 289  Q
    ||||| |||||||||||||| | | |||||| || ||||||||||| |||| |||  ||    |||  |||||||| ||||||  |||||||| |||||     
T  11908884 ttaaggcacttttgttacttgtttcacaagtaatctagggaaaagccgagagaaaagtg----attagcctattacactttatttatcttactctaccca 11908979  T
Q  290 tttgtgcaggaattgacctcaagacac 316  Q
    |||||||||||||||| ||||||||||    
T  11908980 tttgtgcaggaattgaactcaagacac 11909006  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 202 - 305
Target Start/End: Complemental strand, 43670969 - 43670865
Alignment:
Q  202 tttgttacttatcttacaagttatttagggaaaagctgagaaaaagatggacaattgccctattacgctttat--atcttactatacccctttgtgcagg 299  Q
    |||||||||| | | |||||||||| |||||||||| |||| |||  || |  |||| |||||||||||||||  |||||||| ||||| ||||||||||    
T  43670969 tttgttacttgtttcacaagttattcagggaaaagccgagagaaaagtg-attattgacctattacgctttattcatcttactctacccatttgtgcagg 43670871  T
Q  300 aattga 305  Q
    ||||||    
T  43670870 aattga 43670865  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 156 - 228
Target Start/End: Original strand, 22196895 - 22196967
Alignment:
Q  156 gataagtgccagaaagcagttaattccatgttacaattaagacacttttgttacttatcttacaagttattta 228  Q
    ||||||||||| |||  ||||||||  |||||| | || ||||||||||||||||| | ||||||||||||||    
T  22196895 gataagtgccataaattagttaattatatgttatattttagacacttttgttacttgttttacaagttattta 22196967  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 260 - 305
Target Start/End: Complemental strand, 3363398 - 3363351
Alignment:
Q  260 cctattacgctttat--atcttactatacccctttgtgcaggaattga 305  Q
    |||||||||||||||  |||||||| ||||| ||||||||||||||||    
T  3363398 cctattacgctttattcatcttactttacccatttgtgcaggaattga 3363351  T

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Target: scaffold0510 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0510
Description:

Target: scaffold0510; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 198 - 311
Target Start/End: Complemental strand, 2256 - 2142
Alignment:
Q  198 cacttttgttacttatcttacaagttatttagggaaaagctgagaaaaagatggacaattgccctattacgcttta--tatcttactatacccctttgtg 295  Q
    |||||||||||||| | || ||||||||| ||||||||||||||||| | |  ||  |||||||| ||||||||||  |||||||||  |||| |||| |    
T  2256 cacttttgttacttgttttgcaagttattgagggaaaagctgagaaata-agtgattattgcccttttacgctttatctatcttacttcacccatttgcg 2158  T
Q  296 caggaattgacctcaa 311  Q
    ||||| |||| |||||    
T  2157 caggatttgaactcaa 2142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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