View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3231_low_28 (Length: 405)
Name: NF3231_low_28
Description: NF3231
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3231_low_28 |
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Alignment Details
Target: chr5 (Bit Score: 380; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 1 - 388
Target Start/End: Original strand, 2658400 - 2658787
Alignment:
| Q |
1 |
attgtttttcatgaagttcagattcatgaccttggtttgaaattgagatatggtactggatgttgatgttgataaatttgttgatttagattgtagagtc |
100 |
Q |
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| T |
2658400 |
attgtttttcatgaagttcagattcatgaccttggtttgaaattgagatatggtactggatgttgatgttgataaatttgttgattaagattgtagagtc |
2658499 |
T |
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| Q |
101 |
aattattttgtagctggtaactgtcatgacttaatggttttgcaatattctgcttatcattgtaatttctattatgaacacataaagcatgcacaagtat |
200 |
Q |
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| T |
2658500 |
aattattttgtagctggtaactgtcatgacttaatggttttgcaatattctgcttatcattgtaatttctattatgaacacataaagcatgcacaagtat |
2658599 |
T |
|
| Q |
201 |
tagtgtttatgaattgttggttgttgggggtgaaagtactcgcaattatgcatgaatatcgatttctagttgtaaacaatagcccttatttgtcatcttt |
300 |
Q |
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| T |
2658600 |
tagtgtttatgaattgttggttgttgggggtgaaaatactcgcaattatgcatgaatatcgatttctagttgtaaacaatagcccttatttgtcatcttt |
2658699 |
T |
|
| Q |
301 |
ggaaaattggatcttctcgggattagtctgaaaatctgtctagtatgtacattttaatctcttaagtttgtgtaagggggtccctttt |
388 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2658700 |
ggaaaattggatcttctcgggattagtctgaaaatctgtctagtatgtacattttaatctcttaagtttgtgtaagggggtccctttt |
2658787 |
T |
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