View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3231_low_30 (Length: 399)
Name: NF3231_low_30
Description: NF3231
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3231_low_30 |
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Alignment Details
Target: chr1 (Bit Score: 241; Significance: 1e-133; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 57 - 336
Target Start/End: Complemental strand, 39868634 - 39868353
Alignment:
| Q |
57 |
ttactgtgattcgtttcaaacaacattatttat---cactaaaaattaatattctgagcatgactagcgaataaaattttcttgtccactatatcagctt |
153 |
Q |
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| T |
39868634 |
ttactgtgattcgtttcaaacaacaatatttattatcactaaaaattaatattctgagcatgactagcgaataaaattttcttgtccactatatcagctt |
39868535 |
T |
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| Q |
154 |
ccaaaacaaaaatatcccaattgatatatactccatatggtccattagcaaatctgcaagatatgctttttaccttcaactcacactttgtgtccctaaa |
253 |
Q |
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| T |
39868534 |
ccaaaacaaaaatatcccaattgatatatactccaaatggtccattagcaaatctgcaagatatgc-ttttaccttcaactcacactttgtgtccctaaa |
39868436 |
T |
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| Q |
254 |
cactctgactttgtacacatatcattcattaattgaccactgaccactttagttctctgaactgacttcaagttgaattcctg |
336 |
Q |
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| T |
39868435 |
cactctgactttgtgcacatataattcattaattgaccattgaccactttagttctctgaactgacttcaagttgaattcctg |
39868353 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 17 - 59
Target Start/End: Complemental strand, 39868773 - 39868731
Alignment:
| Q |
17 |
acaacatgtcaatggagaaatagcattggtcttagttaaatta |
59 |
Q |
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| T |
39868773 |
acaacatgtcaatggagaaatagcattggtcttagttaaatta |
39868731 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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