View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3231_low_32 (Length: 396)
Name: NF3231_low_32
Description: NF3231
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3231_low_32 |
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| [»] scaffold0128 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 322; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 9 - 378
Target Start/End: Complemental strand, 2910913 - 2910544
Alignment:
| Q |
9 |
acatcatcattagaaacggtagtcacccagttcacagtagaactaaaatgtacaccactatacattctcaaatccatcaaatacaacctcatagccaacc |
108 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2910913 |
acattatcattagaaacggtagtcacccagttcacagtagaactaaaatgtacaccactatacattctcaaatccatcaaatacaacctcatagccaacc |
2910814 |
T |
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| Q |
109 |
ttgtagcggtaaaacgaccatgcattctcgaatccctcgaatacaacctcatagccgtaacaggaaaattttgaatacttgtccaaactttatcaccgaa |
208 |
Q |
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| T |
2910813 |
tcatagccgtaaaacgaccacgcattctcgaatccctcgaatacaacctcatagccgtaacaggaaaattttgaatactcgtccaaactttatcaccgaa |
2910714 |
T |
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| Q |
209 |
actataaactctgacctcgccatgaataccatcacaatccaaggccacaaccttataagtgtgagttgaattatcataaccaaacaccaaattccaaaaa |
308 |
Q |
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| T |
2910713 |
aatataaactctcaccttgccatcaataccatcacaatccaaggccacaaccttataagtgtgagttgaattatcataaccaaacaccaaattccaaaaa |
2910614 |
T |
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| Q |
309 |
caccaattataatcgctatcatacaaaaagcctaatttattagatattgtccttgtggaagggttccaca |
378 |
Q |
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| T |
2910613 |
caccaattataatcgctatcatacaaaaaccctaatttattagatattgtccttgtggcagggttccaca |
2910544 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000006; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 170 - 227
Target Start/End: Original strand, 19637580 - 19637637
Alignment:
| Q |
170 |
aggaaaattttgaatacttgtccaaactttatcaccgaaactataaactctgacctcg |
227 |
Q |
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| T |
19637580 |
aggaaaactttgaatatttctccaaactttatcaccaaaactaaaaactctcacctcg |
19637637 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 248 - 295
Target Start/End: Complemental strand, 7327822 - 7327775
Alignment:
| Q |
248 |
caaggccacaaccttataagtgtgagttgaattatcataaccaaacac |
295 |
Q |
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| T |
7327822 |
caaggctacaaccttataagtgttggttgaattatcataacaaaacac |
7327775 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 249 - 292
Target Start/End: Original strand, 12820316 - 12820359
Alignment:
| Q |
249 |
aaggccacaaccttataagtgtgagttgaattatcataaccaaa |
292 |
Q |
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| T |
12820316 |
aaggccaccaccttgtaagtgtcagttgaattatcataaccaaa |
12820359 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 240 - 295
Target Start/End: Complemental strand, 20456157 - 20456102
Alignment:
| Q |
240 |
tcacaatccaaggccacaaccttataagtgtgagttgaattatcataaccaaacac |
295 |
Q |
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| T |
20456157 |
tcacaattcaaggccacaaccttatatgtgtcggttgaattatcaaaacaaaacac |
20456102 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 249 - 295
Target Start/End: Complemental strand, 22534286 - 22534240
Alignment:
| Q |
249 |
aaggccacaaccttataagtgtgagttgaattatcataaccaaacac |
295 |
Q |
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| T |
22534286 |
aaggctacaaccttataggtgtcggttgaattatcataaccaaacac |
22534240 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 256 - 309
Target Start/End: Original strand, 21210846 - 21210899
Alignment:
| Q |
256 |
caaccttataagtgtgagttgaattatcataaccaaacaccaaattccaaaaac |
309 |
Q |
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| T |
21210846 |
caaccttataagtgtcggttaaattatcataacaaaacacaaacttccaaaaac |
21210899 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0128 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0128
Description:
Target: scaffold0128; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 249 - 295
Target Start/End: Complemental strand, 8248 - 8202
Alignment:
| Q |
249 |
aaggccacaaccttataagtgtgagttgaattatcataaccaaacac |
295 |
Q |
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| T |
8248 |
aaggccacaactttataagtgtcggttgaactatcataaccaaacac |
8202 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 252 - 294
Target Start/End: Original strand, 31443407 - 31443449
Alignment:
| Q |
252 |
gccacaaccttataagtgtgagttgaattatcataaccaaaca |
294 |
Q |
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| T |
31443407 |
gccacaaccttataagtttgggttgtattatcataaccaaaca |
31443449 |
T |
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