View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3231_low_34 (Length: 395)
Name: NF3231_low_34
Description: NF3231
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3231_low_34 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 385; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 1 - 385
Target Start/End: Complemental strand, 10461393 - 10461009
Alignment:
| Q |
1 |
tatagtactatgctctgtacctaaatgtcctttatttacatgatatattgttattaaattcccattaaattatgaatcaaataatttgatgttacaatca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10461393 |
tatagtactatgctctgtacctaaatgtcctttatttacatgatatattgttattaaattcccattaaattatgaatcaaataatttgatgttacaatca |
10461294 |
T |
|
| Q |
101 |
ttttatggccagactcattgatgaataggaaagcagaatccaataatcaaaatttcaaactatagaagcttacgtgtaaatttgatatttggaatttcaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10461293 |
ttttatggccagactcattgatgaataggaaagcagaatccaataatcaaaatttcaaactatagaagcttacgtgtaaatttgatatttggaatttcaa |
10461194 |
T |
|
| Q |
201 |
acataatagatggtgttttgcttgtcgtcctaatttcctatgctatcttttggttttcggttaggccttttaatttgttccccttctttagtagtattag |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10461193 |
acataatagatggtgttttgcttgtcgtcctaatttcctatgctatcttttggttttcggttaggccttttaatttgttccccttctttagtagtattag |
10461094 |
T |
|
| Q |
301 |
gcatctgtgtgtctgctattcatgtataaaattgaacttttaaaattaaaaggtataaaattgaaaagctaatcttgtccctatg |
385 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10461093 |
gcatctgtgtgtctgctattcatgtataaaattgaacttttaaaattaaaaggtataaaattgaaaagctaatcttgtccctatg |
10461009 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University