View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3231_low_35 (Length: 392)
Name: NF3231_low_35
Description: NF3231
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3231_low_35 |
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Alignment Details
Target: chr1 (Bit Score: 215; Significance: 1e-118; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 2 - 242
Target Start/End: Original strand, 27494143 - 27494380
Alignment:
| Q |
2 |
tactccacctccatcttagaatgttgttaattccagaagcaatcctcaacttaattttaagcctacggaatttttgtttttaattcttctacctgacttt |
101 |
Q |
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| T |
27494143 |
tactccacctccatcttagaatgttgttaattctagaagcaatcctcaacttaattttaagcctacggaattttt---tttaattcttctacctgacttt |
27494239 |
T |
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| Q |
102 |
atataggataaacaacatcaaaataattatgaaggtctatatcggtttatattttggtttgtcactgaaagaaagggatatgcattaagtttcaaacttg |
201 |
Q |
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| T |
27494240 |
atataggataaacaacatcaaaataattatgaaggtctatatcggtttatattttggtttgtcgctgaaagaaagggatatgcattaagtttcaaaattg |
27494339 |
T |
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| Q |
202 |
gtttagcaaagatattataatttaaaaggtggcttgaaaaa |
242 |
Q |
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| T |
27494340 |
gtttagcaaagatattataatttaaaaggtggcttgaaaaa |
27494380 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 133 - 306
Target Start/End: Original strand, 26808718 - 26808887
Alignment:
| Q |
133 |
aaggtctatatcggtttatattttggtttgtcactgaaagaaagggatatgcattaagtttcaaacttggtttagcaaagatattataatttaaaaggtg |
232 |
Q |
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| T |
26808718 |
aaggtctatatcagcttatgttaggggttgtcactgaaagaaagg-acatgcatgaaagctcgtacttggtttagtaaagattatatgattcaaagggtg |
26808816 |
T |
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| Q |
233 |
gcttgaaaaagattatagttaccaaaaaattgtctcaatatgtgtatgtacaaccaataagcatgtaaagaata |
306 |
Q |
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| T |
26808817 |
gcttgaaaaaagctctac---ccataaaattgtttcaatgtatgtatgtacaaccaataagcatgtaaagaata |
26808887 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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