View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3231_low_38 (Length: 370)
Name: NF3231_low_38
Description: NF3231
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3231_low_38 |
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Alignment Details
Target: chr4 (Bit Score: 335; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 8 - 354
Target Start/End: Original strand, 28094667 - 28095013
Alignment:
| Q |
8 |
acatcatcatcttggtgaaccaagtactcgcctaagttttcttcgaggtacttgtcgaattcgggtggatcattgtgaccaaactcagttctaacctcga |
107 |
Q |
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| T |
28094667 |
acattatcatcttggtgaaccaagtactcgcctaagttttcttcgaggtacttgtcgaattcgggtggatcattgtgaccaaactcagttctaacctcga |
28094766 |
T |
|
| Q |
108 |
ggattatgatttcggatacggtttctgataagaacttttttatgtcttttatgacaacgtctacgctgtacgtgaggagaattccgtgacatactcttcg |
207 |
Q |
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| T |
28094767 |
ggattatgatttcggatacggtttctgataagaacttttttatgtcttttatgacaacgtctacgctgtacgtgaggagaattccgtgacatactcttcg |
28094866 |
T |
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| Q |
208 |
atcctcttgcacgcgaatgtcgaacactcgtgttcctcttacaagctgattatagatggatatggtttggcattgtgcgaaaggacgagagattcctggt |
307 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
28094867 |
atcctcttgcacgcgaatgtcgaacacccgtgttcctcttacaagctgattatagatggataaggtttggcattgtgcgaaaggacgagagattcctggt |
28094966 |
T |
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| Q |
308 |
atgccgattttgtccgttgcagaatcatgtgttccaggccaaacaat |
354 |
Q |
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| T |
28094967 |
atgccgattttgtccgttgcagaatcatgtgttccaggccaaacaat |
28095013 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 8 - 114
Target Start/End: Complemental strand, 26156090 - 26155984
Alignment:
| Q |
8 |
acatcatcatcttggtgaaccaagtactcgcctaagttttcttcgaggtacttgtcgaattcgggtggatcattgtgaccaaactcagttctaacctcga |
107 |
Q |
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|||| ||||||||| |||| ||| |||| ||||| | |||||| || ||||| || ||||| |||||||||| |||||||| || ||||||||||| | |
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| T |
26156090 |
acatgatcatcttgatgaatcaaaaactcacctaattgttcttccagatacttatcaaattcaggtggatcatcatgaccaaattctgttctaacctcaa |
26155991 |
T |
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| Q |
108 |
ggattat |
114 |
Q |
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| ||||| |
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| T |
26155990 |
gaattat |
26155984 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 8 - 114
Target Start/End: Complemental strand, 26169388 - 26169282
Alignment:
| Q |
8 |
acatcatcatcttggtgaaccaagtactcgcctaagttttcttcgaggtacttgtcgaattcgggtggatcattgtgaccaaactcagttctaacctcga |
107 |
Q |
| |
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|||| ||||||||| |||| ||| |||| ||||| | |||||| || ||||| || ||||| |||||||||| |||||||| || ||||||||||| | |
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| T |
26169388 |
acatgatcatcttgatgaatcaaaaactcacctaattgttcttccagatacttatcaaattcaggtggatcatcatgaccaaattctgttctaacctcaa |
26169289 |
T |
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| Q |
108 |
ggattat |
114 |
Q |
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| ||||| |
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| T |
26169288 |
gaattat |
26169282 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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