View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3231_low_45 (Length: 354)
Name: NF3231_low_45
Description: NF3231
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3231_low_45 |
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Alignment Details
Target: chr2 (Bit Score: 313; Significance: 1e-176; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 2 - 339
Target Start/End: Original strand, 41675010 - 41675347
Alignment:
| Q |
2 |
atatactagcaaacattgatgatctctttgaatactcacacactctcactaacttctcttctctcttattatcacagtacccnnnnnnnccctacacaca |
101 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
41675010 |
atatactagcaaacattgatgatctctttgaatactcacacactctcactaacttctcttctctcttattatcacagtaccctttttttccctacacaca |
41675109 |
T |
|
| Q |
102 |
aataaagaatcagttgcatagtgtgaaagctagctagttttggatattactatacaatttcttatggatgagaagagaaagacaagttccaagtcattgt |
201 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41675110 |
aataaagaatcagttgcatagtgtgaaagctagctagttttggatattactatacaatttcttatggatgagaagagaaagacaagttccaagtcattgt |
41675209 |
T |
|
| Q |
202 |
tctcaaggagttcctcaacaagaagctcaacttcaaactcttcactcctaaggagttcttcttcttcctccaaatgcaatcttcaaagaagcttctcaca |
301 |
Q |
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|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41675210 |
tctcaaggagttcctcaacaagaagctctacttcaaactcttcactcctaaggagttcttcttcttcctccaaatgcaatcttcaaagaagcttctcaca |
41675309 |
T |
|
| Q |
302 |
gaaaaacccttcttcaataggtcgaaaatgcaccaatt |
339 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
41675310 |
gaaaaacccttcttcaataggtcgaaaatgcaccaatt |
41675347 |
T |
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