View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3231_low_46 (Length: 352)

Name: NF3231_low_46
Description: NF3231
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3231_low_46
NF3231_low_46
[»] chr8 (14 HSPs)
chr8 (115-334)||(4875047-4875266)
chr8 (200-301)||(4726219-4726320)
chr8 (200-309)||(4889906-4890015)
chr8 (208-331)||(4745751-4745874)
chr8 (200-301)||(4715072-4715173)
chr8 (200-293)||(4924936-4925029)
chr8 (207-298)||(21439381-21439472)
chr8 (200-334)||(4681387-4681521)
chr8 (204-301)||(4736775-4736872)
chr8 (205-301)||(4689051-4689147)
chr8 (200-256)||(4996402-4996458)
chr8 (209-298)||(4913451-4913540)
chr8 (207-248)||(4776515-4776556)
chr8 (233-309)||(4703699-4703775)


Alignment Details
Target: chr8 (Bit Score: 212; Significance: 1e-116; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 115 - 334
Target Start/End: Original strand, 4875047 - 4875266
Alignment:
Q  115 agggggcctatattttaagatgtttttcaaaaaagtaaagactagcttaccatcatcttgtagattatcaaatcctgaaatgtcatttagtttataaaac 214  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  4875047 agggggcctatatttaaagatgtttttcaaaaaagtaaagactagcttaccatcatcttgtagactatcaaatcctgaaatgtcatttagtttataaaac 4875146  T
Q  215 tcaaaggcattcaggatcggtggaagggttgaatcctctgtcctaaaaagggaaattttatacctttttgctccagtcaaaggttttcgactaaaaaagg 314  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4875147 tcaaaggcattcaggatcggtggaagggttgaatcctctgtcctaaaaagggaaattttatacctttttgctccagtcaaaggttttcgactaaaaaagg 4875246  T
Q  315 tatctactgaccggtataca 334  Q
    ||||||||||||||||||||    
T  4875247 tatctactgaccggtataca 4875266  T

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Target: chr8; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 200 - 301
Target Start/End: Complemental strand, 4726320 - 4726219
Alignment:
Q  200 tttagtttataaaactcaaaggcattcaggatcggtggaagggttgaatcctctgtcctaaaaagggaaattttatacctttttgctccagtcaaaggtt 299  Q
    ||||||||||| | |||||||||||| ||||| |||||||||||||| |  |||||| |||||||||||| || ||||||| | ||||||||||||||||    
T  4726320 tttagtttatatacctcaaaggcattgaggattggtggaagggttgacttttctgtcttaaaaagggaaacttgataccttgtggctccagtcaaaggtt 4726221  T
Q  300 tt 301  Q
    ||    
T  4726220 tt 4726219  T

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Target: chr8; HSP #3
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 200 - 309
Target Start/End: Original strand, 4889906 - 4890015
Alignment:
Q  200 tttagtttataaaactcaaaggcattcaggatcggtggaagggttgaatcctctgtcctaaaaagggaaattttatacctttttgctccagtcaaaggtt 299  Q
    |||| |||||||| |||||||||||| ||||| |||||||||||||||| ||||||| ||   |||||||||| ||| ||||| |||||||||||||||     
T  4889906 tttactttataaatctcaaaggcattgaggattggtggaagggttgaattctctgtcttagtcagggaaatttgatagcttttggctccagtcaaaggtg 4890005  T
Q  300 ttcgactaaa 309  Q
    || |||||||    
T  4890006 ttggactaaa 4890015  T

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Target: chr8; HSP #4
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 208 - 331
Target Start/End: Complemental strand, 4745874 - 4745751
Alignment:
Q  208 ataaaactcaaaggcattcaggatcggtggaagggttgaatcctctgtcctaaaaagggaaattttatacctttttgctccagtcaaaggttttcgacta 307  Q
    ||||| |||| ||||||| ||||| |||||||||||||||| ||||||| || | |||||||||| ||||||||| ||||||||||||||| ||  ||||    
T  4745874 ataaacctcataggcattgaggattggtggaagggttgaattctctgtcttatagagggaaatttgataccttttggctccagtcaaaggtcttatacta 4745775  T
Q  308 aaaaaggtatctactgaccggtat 331  Q
     | |  |||| |||||||||||||    
T  4745774 gatatagtatttactgaccggtat 4745751  T

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Target: chr8; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 200 - 301
Target Start/End: Complemental strand, 4715173 - 4715072
Alignment:
Q  200 tttagtttataaaactcaaaggcattcaggatcggtggaagggttgaatcctctgtcctaaaaagggaaattttatacctttttgctccagtcaaaggtt 299  Q
    |||| |||||||| |||| ||||||| ||||| |||||||||||||||| ||||||| || ||||||||| |  ||||||| | ||||||||||||||||    
T  4715173 tttactttataaacctcataggcattgaggattggtggaagggttgaattctctgtcttagaaagggaaaatagataccttgtggctccagtcaaaggtt 4715074  T
Q  300 tt 301  Q
    ||    
T  4715073 tt 4715072  T

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Target: chr8; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 200 - 293
Target Start/End: Original strand, 4924936 - 4925029
Alignment:
Q  200 tttagtttataaaactcaaaggcattcaggatcggtggaagggttgaatcctctgtcctaaaaagggaaattttatacctttttgctccagtca 293  Q
    |||| |||||||| |||| ||||||| ||||| |||||||||||||||| ||||||| ||| |||||||| || ||||||||| ||||||||||    
T  4924936 tttactttataaacctcataggcattgaggatgggtggaagggttgaattctctgtcttaataagggaaaattgataccttttggctccagtca 4925029  T

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Target: chr8; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 207 - 298
Target Start/End: Original strand, 21439381 - 21439472
Alignment:
Q  207 tataaaactcaaaggcattcaggatcggtggaagggttgaatcctctgtcctaaaaagggaaattttatacctttttgctccagtcaaaggt 298  Q
    |||||| |||||| ||||| ||||| |||||||||||||||| || ||||||| |||| ||||||| ||||||| | |||||||||||||||    
T  21439381 tataaatctcaaatgcatttaggatgggtggaagggttgaattctgtgtcctagaaagagaaatttgataccttgtggctccagtcaaaggt 21439472  T

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Target: chr8; HSP #8
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 200 - 334
Target Start/End: Complemental strand, 4681521 - 4681387
Alignment:
Q  200 tttagtttataaaactcaaaggcattcaggatcggtggaagggttgaatcctctgtcctaaaaagggaaattttatacctttttgctccagtcaaaggtt 299  Q
    |||| |||||||| ||||| |||||||||||| ||||||||||||||||  |||||| |  |||||| || | ||||| || | |||||||||||||||     
T  4681521 tttactttataaacctcaacggcattcaggatgggtggaagggttgaattatctgtcttggaaagggtaaatatatactttgtcgctccagtcaaaggta 4681422  T
Q  300 ttcgactaaaaaaggtatctactgaccggtataca 334  Q
    ||  ||| || | | ||||||||||||||||||||    
T  4681421 ttgtactgaatatgctatctactgaccggtataca 4681387  T

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Target: chr8; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 204 - 301
Target Start/End: Complemental strand, 4736872 - 4736775
Alignment:
Q  204 gtttataaaactcaaaggcattcaggatcggtggaagggttgaatcctctgtcctaaaaagggaaattttatacctttttgctccagtcaaaggtttt 301  Q
    ||||||||| |||||| ||||||||||| ||||||||||||||||  ||| || |  |||||||||  | |||||||   ||||||||||||||||||    
T  4736872 gtttataaacctcaaaagcattcaggatgggtggaagggttgaattatctttcttcgaaagggaaacatgataccttggggctccagtcaaaggtttt 4736775  T

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Target: chr8; HSP #10
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 205 - 301
Target Start/End: Complemental strand, 4689147 - 4689051
Alignment:
Q  205 tttataaaactcaaaggcattcaggatcggtggaagggttgaatcctctgtcctaaaaagggaaattttatacctttttgctccagtcaaaggtttt 301  Q
    |||||||| |||| ||||||| ||||| ||||||||||||||||  || ||| | |||||||||| |  |||||||   ||||||||||||||||||    
T  4689147 tttataaacctcataggcattgaggattggtggaagggttgaattttccgtctttaaaagggaaaatagataccttgcggctccagtcaaaggtttt 4689051  T

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Target: chr8; HSP #11
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 200 - 256
Target Start/End: Complemental strand, 4996458 - 4996402
Alignment:
Q  200 tttagtttataaaactcaaaggcattcaggatcggtggaagggttgaatcctctgtc 256  Q
    |||| ||||||||  ||||||||||| ||||| ||||||||||||||||||||||||    
T  4996458 tttactttataaatttcaaaggcattgaggattggtggaagggttgaatcctctgtc 4996402  T

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Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 209 - 298
Target Start/End: Original strand, 4913451 - 4913540
Alignment:
Q  209 taaaactcaaaggcattcaggatcggtggaagggttgaatcctctgtcctaaaaagggaaattttatacctttttgctccagtcaaaggt 298  Q
    |||| |||||||||||| ||||| |||||||||||||||| || |||| |  |||| ||||||| ||||||| | ||||||  |||||||    
T  4913451 taaatctcaaaggcatttaggatgggtggaagggttgaattctttgtcttggaaagagaaatttgataccttgtggctccaaccaaaggt 4913540  T

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Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 207 - 248
Target Start/End: Original strand, 4776515 - 4776556
Alignment:
Q  207 tataaaactcaaaggcattcaggatcggtggaagggttgaat 248  Q
    |||||| |||||||||||| ||||| ||||||||||||||||    
T  4776515 tataaatctcaaaggcatttaggatgggtggaagggttgaat 4776556  T

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Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 233 - 309
Target Start/End: Complemental strand, 4703775 - 4703699
Alignment:
Q  233 ggtggaagggttgaatcctctgtcctaaaaagggaaattttatacctttttgctccagtcaaaggttttcgactaaa 309  Q
    ||||||||||||||||  |||||| |||| |||||||||| |||| |||| |||| ||  ||||||| || ||||||    
T  4703775 ggtggaagggttgaattatctgtcttaaagagggaaatttcatacgttttggctctaggaaaaggttctctactaaa 4703699  T

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