View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3231_low_48 (Length: 350)
Name: NF3231_low_48
Description: NF3231
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3231_low_48 |
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Alignment Details
Target: chr1 (Bit Score: 310; Significance: 1e-174; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 1 - 338
Target Start/End: Complemental strand, 49302172 - 49301835
Alignment:
| Q |
1 |
ccaccaccatttataatatctgattttacaaaagacaatccattgagcagatttgtgcagtaatctggttcaaccataccattaagaactatttcatctt |
100 |
Q |
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| T |
49302172 |
ccaccaccatttataatatctgattttacaaaagacaatccattaagcagatttgtgcagtaatctggttcaaccataccattaagaactatttcatctt |
49302073 |
T |
|
| Q |
101 |
cttcaggttcacatagtgattgaactatatctgaacttccacattcccttctatattctagtgtgataccagataattggtgactctctagaatttggtc |
200 |
Q |
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| T |
49302072 |
cttcaggttcacatagtgattgaactatatctgaacttccacattcccttctatattctagtgtgataccagataattggtgactctctagaatttggtc |
49301973 |
T |
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| Q |
201 |
tggaatggtctgtaaaataatcaataatnnnnnnnntgaaagttaactatttgattatattctaataatggtataaatattgaagaatgataatgagtat |
300 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49301972 |
tggaatggtctgtaaaataatcaataataaaaaaaatgaaagttaactatttgattatattctaataatggtataaatattgaagaatgataatgagtat |
49301873 |
T |
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| Q |
301 |
attaatattgttttgaatttacctctagcatccacctt |
338 |
Q |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
49301872 |
attaatattgttttgaatttacctctagcatccacctt |
49301835 |
T |
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