View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3231_low_49 (Length: 350)

Name: NF3231_low_49
Description: NF3231
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3231_low_49
NF3231_low_49
[»] chr3 (3 HSPs)
chr3 (1-335)||(49431341-49431673)
chr3 (134-179)||(30080713-30080758)
chr3 (137-218)||(30681913-30681993)
[»] chr8 (2 HSPs)
chr8 (122-182)||(43950379-43950439)
chr8 (163-220)||(27563022-27563078)
[»] chr5 (3 HSPs)
chr5 (163-211)||(34278717-34278764)
chr5 (163-193)||(26440619-26440649)
chr5 (124-180)||(25773384-25773440)
[»] chr1 (3 HSPs)
chr1 (128-180)||(30005789-30005841)
chr1 (163-208)||(32834860-32834904)
chr1 (163-220)||(43891471-43891527)
[»] chr7 (3 HSPs)
chr7 (120-183)||(42669409-42669472)
chr7 (93-175)||(7380964-7381045)
chr7 (123-183)||(16870652-16870712)
[»] chr6 (3 HSPs)
chr6 (123-169)||(406875-406921)
chr6 (123-180)||(34500902-34500959)
chr6 (159-211)||(24718140-24718191)
[»] chr4 (1 HSPs)
chr4 (124-190)||(19533988-19534054)
[»] chr2 (2 HSPs)
chr2 (161-211)||(14802918-14802967)
chr2 (118-190)||(15300334-15300406)


Alignment Details
Target: chr3 (Bit Score: 263; Significance: 1e-146; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 1 - 335
Target Start/End: Complemental strand, 49431673 - 49431341
Alignment:
Q  1 aggccaagtatcataagaaagtgaaacatcagagtaaataatactccacctaaattacatacttttaagtgtcataagaatatgaaacatcctactacct 100  Q
    ||||||||||||||||||||||||||||||||||||||||||| | ||| ||     ||||  || |||| |||||||||||||||||||||||||||||    
T  49431673 aggccaagtatcataagaaagtgaaacatcagagtaaataatatttcacttatccg-cataaatt-aagtatcataagaatatgaaacatcctactacct 49431576  T
Q  101 tcgtcccaaaataagatatctagtttgacaatatgcactattcaaattacatacttttatcatatttttctactaatatataacgacaaaatagtaacat 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  49431575 tcgtcccaaaataagatatctagtttgacaatatgcactattcaaattacatacttttatcatatttttctattaatatataacgacaaaatagtaacat 49431476  T
Q  201 ttaagatgttggatttgtctttgatattattattttgtgcgaggccagaggcaaaaggctgaagaggaattgggtgcttcaaagaggaaggagtgagagt 300  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49431475 ttaagatgttggatttatctttgatattattattttgtgcgaggccagaggcaaaaggctgaagaggaattgggtgcttcaaagaggaaggagtgagagt 49431376  T
Q  301 agcattcttaattaaccttgcaggtataattaact 335  Q
    ||||||||||||||| ||||| |||||||||||||    
T  49431375 agcattcttaattaaacttgccggtataattaact 49431341  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 134 - 179
Target Start/End: Complemental strand, 30080758 - 30080713
Alignment:
Q  134 tgcactattcaaattacatacttttatcatatttttctactaatat 179  Q
    |||||||||||  | ||||||||| |||||||||||||||||||||    
T  30080758 tgcactattcacgtaacatactttgatcatatttttctactaatat 30080713  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 137 - 218
Target Start/End: Complemental strand, 30681993 - 30681913
Alignment:
Q  137 actattcaaattacatacttttatcatatttttctactaatatataacgacaaaatagtaacatttaagatgttggatttgt 218  Q
    |||||||| || |||||| || |||||||||||||| ||||||| || || ||| || |||||| |||||||||| ||||||    
T  30681993 actattcacataacataccttgatcatatttttctaataatatacaaagataaatta-taacatataagatgttgaatttgt 30681913  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 122 - 182
Target Start/End: Complemental strand, 43950439 - 43950379
Alignment:
Q  122 agtttgacaatatgcactattcaaattacatacttttatcatatttttctactaatatata 182  Q
    |||||||| || ||||||||||| || ||||||||| | || |||||||||||||||||||    
T  43950439 agtttgactatgtgcactattcacataacatactttgaccaaatttttctactaatatata 43950379  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 163 - 220
Target Start/End: Complemental strand, 27563078 - 27563022
Alignment:
Q  163 tatttttctactaatatataacgacaaaatagtaacatttaagatgttggatttgtct 220  Q
    ||||||||||||||||||||| || |||||| || ||| |||||||||||||| ||||    
T  27563078 tatttttctactaatatataaagataaaata-tagcatataagatgttggattcgtct 27563022  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 163 - 211
Target Start/End: Complemental strand, 34278764 - 34278717
Alignment:
Q  163 tatttttctactaatatataacgacaaaatagtaacatttaagatgttg 211  Q
    ||||||||||||||||||||| ||||||||| |||||| ||||||||||    
T  34278764 tatttttctactaatatataaagacaaaata-taacatataagatgttg 34278717  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 163 - 193
Target Start/End: Complemental strand, 26440649 - 26440619
Alignment:
Q  163 tatttttctactaatatataacgacaaaata 193  Q
    |||||||||||||||||||||||||||||||    
T  26440649 tatttttctactaatatataacgacaaaata 26440619  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 124 - 180
Target Start/End: Complemental strand, 25773440 - 25773384
Alignment:
Q  124 tttgacaatatgcactattcaaattacatacttttatcatatttttctactaatata 180  Q
    ||||||||| ||||||||| |  | ||||||||| | ||||||||||||||||||||    
T  25773440 tttgacaatgtgcactattgacctaacatactttgaccatatttttctactaatata 25773384  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 128 - 180
Target Start/End: Complemental strand, 30005841 - 30005789
Alignment:
Q  128 acaatatgcactattcaaattacatacttttatcatatttttctactaatata 180  Q
    ||||| |||||| || | |||||||||||| ||||||||||||||||||||||    
T  30005841 acaatgtgcacttttgacattacatactttaatcatatttttctactaatata 30005789  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 163 - 208
Target Start/End: Original strand, 32834860 - 32834904
Alignment:
Q  163 tatttttctactaatatataacgacaaaatagtaacatttaagatg 208  Q
    ||||||||||||||||||||| ||||||||| |||||| |||||||    
T  32834860 tatttttctactaatatataaagacaaaata-taacatataagatg 32834904  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 163 - 220
Target Start/End: Original strand, 43891471 - 43891527
Alignment:
Q  163 tatttttctactaatatataacgacaaaatagtaacatttaagatgttggatttgtct 220  Q
    ||||||||||||||||||||  ||||||||| ||| || |||||||||||||| ||||    
T  43891471 tatttttctactaatatatacagacaaaata-taatatataagatgttggattcgtct 43891527  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000008; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 120 - 183
Target Start/End: Complemental strand, 42669472 - 42669409
Alignment:
Q  120 ctagtttgacaatatgcactattcaaattacatacttttatcatatttttctactaatatataa 183  Q
    |||||||||| || ||||||||||| || ||| ||||| | ||||||||||||| |||||||||    
T  42669472 ctagtttgactatgtgcactattcacataacacactttaaccatatttttctaccaatatataa 42669409  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 93 - 175
Target Start/End: Complemental strand, 7381045 - 7380964
Alignment:
Q  93 tactaccttcgtcccaaaataagatatctagtttgacaatatgcactattcaaattacatacttttatcatatttttctacta 175  Q
    ||||||||||||| |||||||||  |  ||||| ||| |||| || ||||||||| ||||| ||||||||| |||||||||||    
T  7381045 tactaccttcgtctcaaaataagtgacatagtt-gactatatacattattcaaataacatatttttatcatgtttttctacta 7380964  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 123 - 183
Target Start/End: Complemental strand, 16870712 - 16870652
Alignment:
Q  123 gtttgacaatatgcactattcaaattacatacttttatcatatttttctactaatatataa 183  Q
    |||| |||||||||||||||||||| || |||||| | ||||||| |  ||||||||||||    
T  16870712 gttttacaatatgcactattcaaataacttactttgaccatatttgttaactaatatataa 16870652  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 123 - 169
Target Start/End: Original strand, 406875 - 406921
Alignment:
Q  123 gtttgacaatatgcactattcaaattacatacttttatcatattttt 169  Q
    ||||||||||||||| ||||||||| | ||||||| |||||||||||    
T  406875 gtttgacaatatgcattattcaaatcatatactttaatcatattttt 406921  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 123 - 180
Target Start/End: Original strand, 34500902 - 34500959
Alignment:
Q  123 gtttgacaatatgcactattcaaattacatacttttatcatatttttctactaatata 180  Q
    |||||||||| |||||| || |  | ||||||||| ||||||||||||||||||||||    
T  34500902 gtttgacaatgtgcacttttgacctgacatactttgatcatatttttctactaatata 34500959  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 159 - 211
Target Start/End: Complemental strand, 24718191 - 24718140
Alignment:
Q  159 atcatatttttctactaatatataacgacaaaatagtaacatttaagatgttg 211  Q
    ||||||||||||||||| ||||||| ||| |||||||| ||| ||||||||||    
T  24718191 atcatatttttctactattatataaagac-aaatagtagcatctaagatgttg 24718140  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 124 - 190
Target Start/End: Complemental strand, 19534054 - 19533988
Alignment:
Q  124 tttgacaatatgcactattcaaattacatacttttatcatatttttctactaatatataacgacaaa 190  Q
    ||||| |||||||| |||||| || ||||||||| |  ||||||||||||||||||| || ||||||    
T  19534054 tttgaaaatatgcattattcatataacatactttgacaatatttttctactaatatacaaagacaaa 19533988  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 161 - 211
Target Start/End: Complemental strand, 14802967 - 14802918
Alignment:
Q  161 catatttttctactaatatataacgacaaaatagtaacatttaagatgttg 211  Q
    ||||||||||||||||||||||| ||||||||| || ||| ||||||||||    
T  14802967 catatttttctactaatatataaagacaaaata-tagcatataagatgttg 14802918  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 118 - 190
Target Start/End: Complemental strand, 15300406 - 15300334
Alignment:
Q  118 atctagtttgacaatatgcactattcaaattacatacttttatcatatttttctactaatatataacgacaaa 190  Q
    ||||| |||||| || |||| ||| || || ||||||||| | |||| |||||||||||||||||| ||||||    
T  15300406 atctaatttgaccatgtgcattatccacataacatactttaaccataattttctactaatatataaagacaaa 15300334  T

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