View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3231_low_5 (Length: 717)
Name: NF3231_low_5
Description: NF3231
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3231_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 473; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 473; E-Value: 0
Query Start/End: Original strand, 5 - 582
Target Start/End: Original strand, 48286786 - 48287355
Alignment:
| Q |
5 |
gagaagcaaaggaggaagttgaaaagtgcttttagtagtaaagctttggtgcctagtgttgaggtgaaaacaagaacgagtgttagggttcaaggttgga |
104 |
Q |
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| T |
48286786 |
gagaaacaaaggaggaagttgaaaagtgcttttagtagtaaagctttggtgcctagtgttgaggtgaaaacaagaacgagtgttagggttcaaggttgga |
48286885 |
T |
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| Q |
105 |
aatccatgatggttggtgttactgttgtttgtggtgatgttactttgagacagattcaaaatggtgacatgcctccttgttccttcactgtattcaaatg |
204 |
Q |
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| T |
48286886 |
aatccatgatgattggtgttactgttgtttgtggtgatgttactttgagacagattcaaaatggtgacatgcctccttgttccttcactgtattcaaatg |
48286985 |
T |
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| Q |
205 |
gtaatgcatggtaacgccataactattctatctatgttatatgatgaccctcttcatcgatcactt-tttagttaataataatcttcattcatgttattc |
303 |
Q |
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| T |
48286986 |
gtaatgcatggtaacgccataactattctatctatgttatatgatgaccctcttcatc----acttgtttagttaataataatcttcattcatgttattc |
48287081 |
T |
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| Q |
304 |
catttgtttaattagcatttcatcttcaaattttattggttttgtttagggaaagacttgttagttgtgtcatgttctccaatgaaaatgcagtaaaact |
403 |
Q |
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| T |
48287082 |
catttgttta----gcatttcatcttcaaattttattggttttgtttagggaaagacttgttagttgtgtcatgttctccaatgaaaatgcggtaaaact |
48287177 |
T |
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| Q |
404 |
tttattaaactatttttcaaaaggtgacaatctgcaagatcagactatccaaatttcaaccttaaaatgttaatatcaaacnnnnnnnnnnnnnctattt |
503 |
Q |
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| T |
48287178 |
tttatcaaaccatttttcaaaaggtgacaatctgcaagatcagactatccaaatttcaaccttaaaatgttaatatcaaac-aaaaataaaaaactattt |
48287276 |
T |
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| Q |
504 |
taagatttgaactattcaatcttgattgggtggtcccatttcaatgtgtaaactttcaagtagaaacaaaacataaaaa |
582 |
Q |
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| T |
48287277 |
taagatttgaactattcaatcttgattgggtggtcccatttcaatgtgtaaactttcaagtagaaacaaaacataaaaa |
48287355 |
T |
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