View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3231_low_51 (Length: 348)
Name: NF3231_low_51
Description: NF3231
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3231_low_51 |
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Alignment Details
Target: chr5 (Bit Score: 180; Significance: 4e-97; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 180; E-Value: 4e-97
Query Start/End: Original strand, 8 - 191
Target Start/End: Original strand, 5188552 - 5188735
Alignment:
| Q |
8 |
gaagggatttggaatctgcatcaaacccttgcgtcgttgtgttgcatgatgaatgaaaaccataataaaataacgaaatcttaactagaggaaacgaatc |
107 |
Q |
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| T |
5188552 |
gaagggatttggaatctgcatcaaacccttgcgtcgttgtgttgcatgatgaatgaaaaccataataaaataacgaaatcttaactagaggaaacgaatc |
5188651 |
T |
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| Q |
108 |
aatatatatattagaacatcactaaccacaaaaaattcacaaattccacactatggaattactgaaaaattaatacacttcaag |
191 |
Q |
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| T |
5188652 |
aatatatatattagaacatcactaaccacaaaaaattcacaaattccacactatggaattactgaaaaactaatacacttcaag |
5188735 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 247 - 334
Target Start/End: Original strand, 5188791 - 5188879
Alignment:
| Q |
247 |
gtactataatcgatagtttcaaaa-aacaatgacaaccaccatatggcatcaatattttccaaagccttactctttttccccaaaaaag |
334 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5188791 |
gtactataatcgatagtttcaaaaaaacaatgacaaccaccatatggcatcaatattttccaaagccttactctttttccccaaaaaag |
5188879 |
T |
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