View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3231_low_52 (Length: 345)
Name: NF3231_low_52
Description: NF3231
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3231_low_52 |
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Alignment Details
Target: chr8 (Bit Score: 256; Significance: 1e-142; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 11 - 329
Target Start/End: Complemental strand, 42202021 - 42201701
Alignment:
| Q |
11 |
cagagagtaatatcaacaagtgataaacaaatt----ttaaatattatataacaaatcacaggtgcttgagtagttaaaatatcaaccgttaaannnnnn |
106 |
Q |
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| T |
42202021 |
cagagagtaatatcaacaagtgataaacaaattaattttaaatat---ataacaaatcacaggtgcttgagtagttaaaatatcaaccgttaaatttttt |
42201925 |
T |
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| Q |
107 |
ncactttactaactactcacttt-agatgaagcaaatttttgaaacaaaataataagttaagattctaccaatgacataaccatcgcgatgtttgtccca |
205 |
Q |
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|||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42201924 |
tcactttactaactactcacttttagatgaatcaaatttttgaaacaaaataataagttaagattctaccaatgacataaccatcgcgatgtttgtccca |
42201825 |
T |
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| Q |
206 |
tggtcttgaagcctttttaggctcttcattcctttgagacaaagccctgcaagcaatcaatcctacaacacccataggtataattgaagcttcggtacca |
305 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
42201824 |
tggtcttgaagcctttttaggctcttcattcctttgagacaaagccctgcaagcaatcaatcctccaacacccataggtataattgaagcttcggtacca |
42201725 |
T |
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| Q |
306 |
ccaaccaccataatatctacttca |
329 |
Q |
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|||||||||||||||||||||||| |
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| T |
42201724 |
ccaaccaccataatatctacttca |
42201701 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 186 - 329
Target Start/End: Complemental strand, 42186326 - 42186183
Alignment:
| Q |
186 |
ccatcgcgatgtttgtcccatggtcttgaagcctttttaggctcttcattcctttgagacaaagccctgcaagcaatcaatcctacaacacccataggta |
285 |
Q |
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| T |
42186326 |
ccatcgcggtgtttgtcccatggtcttgaagccttcttaggctcttcattcctctgagacaatgccctgcaagcaatgaatgctccaacaccagaaggta |
42186227 |
T |
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| Q |
286 |
taattgaagcttcggtaccaccaaccaccataatatctacttca |
329 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
42186226 |
taagtgaagcttcggtaccaccaaccaccataatatctacttca |
42186183 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 186 - 329
Target Start/End: Complemental strand, 42196008 - 42195865
Alignment:
| Q |
186 |
ccatcgcgatgtttgtcccatggtcttgaagcctttttaggctcttcattcctttgagacaaagccctgcaagcaatcaatcctacaacacccataggta |
285 |
Q |
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||||||||||||||||||||||||||||| ||| | | |||||||||||||||||||||||||||||||||||||| |||||| ||||| ||||| |
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| T |
42196008 |
ccatcgcgatgtttgtcccatggtcttgacgccctctgaggctcttcattcctttgagacaaagccctgcaagcaaggaatcctgatacaccagaaggta |
42195909 |
T |
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| Q |
286 |
taattgaagcttcggtaccaccaaccaccataatatctacttca |
329 |
Q |
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||| ||||||||||| |||||||||||||||||||||||||||| |
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| T |
42195908 |
taagtgaagcttcggaaccaccaaccaccataatatctacttca |
42195865 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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