View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3231_low_54 (Length: 341)
Name: NF3231_low_54
Description: NF3231
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3231_low_54 |
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Alignment Details
Target: chr6 (Bit Score: 273; Significance: 1e-152; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 18 - 336
Target Start/End: Original strand, 33337134 - 33337449
Alignment:
| Q |
18 |
tggaacaagctcgcaaacaatttcatgaaaatcgcttcaaaactaagaacagttctgatctcttaatgagactccaggtaaatacatgcataaatattat |
117 |
Q |
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| T |
33337134 |
tggaacaagctcgcaaacaatttcatgaaaatcgcttcaaaactaagaacagttctgatctcttaatgagactccaggtaaatacatgcataaatattat |
33337233 |
T |
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| Q |
118 |
aatttacatatagtgctgaagggtaaataaataattaattttggttttgtagtttgagagggaaaaaggttttttaaatatgaaatcagagaataataat |
217 |
Q |
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| T |
33337234 |
aa----catataatgctgaagggtaaataa-taattaattttggttttgtagtttgagagggaaaaaggttttttaaatatgaaatcagagaataataat |
33337328 |
T |
|
| Q |
218 |
a--aggtgaaaatggagaaggaagaagtgggaaagacactaaaaagagcattgagattttactcaacactgcaaactgaagatggtttctggcctggtga |
315 |
Q |
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| T |
33337329 |
ataaggtgaaaatggagaaggaagaagtgggaaagacactaaaaagagcattgagattttactcaacactgcaaactgaagatggtttctggcctggtga |
33337428 |
T |
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| Q |
316 |
ctatggtggtcctttgcttct |
336 |
Q |
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||||||||||||||| |||| |
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| T |
33337429 |
ttatggtggtcctttgtttct |
33337449 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 18 - 119
Target Start/End: Complemental strand, 35130997 - 35130896
Alignment:
| Q |
18 |
tggaacaagctcgcaaacaatttcatgaaaatcgcttcaaaactaagaacagttctgatctcttaatgagactccaggtaaatacatgcataaatattat |
117 |
Q |
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||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35130997 |
tggaacatgctcgcaaacaatttcatgtcaatcgcttcaaaactaagaacagttctgatctcttaatgagactccaggtaaatacatgcataaatattat |
35130898 |
T |
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| Q |
118 |
aa |
119 |
Q |
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|| |
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| T |
35130897 |
aa |
35130896 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 234 - 336
Target Start/End: Complemental strand, 35130702 - 35130600
Alignment:
| Q |
234 |
aggaagaagtgggaaagacactaaaaagagcattgagattttactcaacactgcaaactgaagatggtttctggcctggtgactatggtggtcctttgct |
333 |
Q |
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||||| ||||||||||||||||||||||||||||||||| |||||||||| |||||||||| |||||||||||||||||||||||||||||||||||| | |
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| T |
35130702 |
aggaaaaagtgggaaagacactaaaaagagcattgagatgttactcaacattgcaaactgaggatggtttctggcctggtgactatggtggtcctttgtt |
35130603 |
T |
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| Q |
334 |
tct |
336 |
Q |
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||| |
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| T |
35130602 |
tct |
35130600 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 144 - 242
Target Start/End: Complemental strand, 35130819 - 35130718
Alignment:
| Q |
144 |
ataaataattaattttggttttgtagtttgagagggaaaaaggttttttaaatatgaaatcag---agaataataataaggtgaaaatggagaaggaaga |
240 |
Q |
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||||||| ||||||||||||||||||||||| |||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
35130819 |
ataaatacttaattttggttttgtagtttgaaagggaaaaaggtgttttaaatatgaaatcagagaagaataataataaggtgaaaatggagaaggaaga |
35130720 |
T |
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| Q |
241 |
ag |
242 |
Q |
| |
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|| |
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| T |
35130719 |
ag |
35130718 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 50; Significance: 1e-19; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 20 - 97
Target Start/End: Original strand, 22501979 - 22502056
Alignment:
| Q |
20 |
gaacaagctcgcaaacaatttcatgaaaatcgcttcaaaactaagaacagttctgatctcttaatgagactccaggta |
97 |
Q |
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||||||||||||||||||||| || ||||||||||||| | ||| |||||||||||||||||||||||| | |||||| |
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| T |
22501979 |
gaacaagctcgcaaacaatttaatcaaaatcgcttcaacaataaaaacagttctgatctcttaatgagattacaggta |
22502056 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 241 - 324
Target Start/End: Original strand, 22502355 - 22502438
Alignment:
| Q |
241 |
agtgggaaagacactaaaaagagcattgagattttactcaacactgcaaactgaagatggtttctggcctggtgactatggtgg |
324 |
Q |
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|||| ||| |||||||||||||||| ||||| ||||||||||||||| |||||||||||||||||| |||||||||||||| |
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| T |
22502355 |
agtgagaaggacactaaaaagagcactgagaaattactcaacactgcaggttgaagatggtttctggccgggtgactatggtgg |
22502438 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 148 - 188
Target Start/End: Original strand, 22502226 - 22502266
Alignment:
| Q |
148 |
ataattaattttggttttgtagtttgagagggaaaaaggtt |
188 |
Q |
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|||| |||||||||||||| ||||||||||||||||||||| |
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| T |
22502226 |
ataaataattttggttttgcagtttgagagggaaaaaggtt |
22502266 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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