View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3231_low_56 (Length: 337)

Name: NF3231_low_56
Description: NF3231
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3231_low_56
NF3231_low_56
[»] chr5 (1 HSPs)
chr5 (18-321)||(17302756-17303065)
[»] chr1 (2 HSPs)
chr1 (118-192)||(10214685-10214759)
chr1 (122-192)||(11825574-11825644)
[»] chr4 (3 HSPs)
chr4 (84-221)||(14191384-14191521)
chr4 (113-239)||(24627684-24627810)
chr4 (105-221)||(1506938-1507054)
[»] chr8 (3 HSPs)
chr8 (104-219)||(17275840-17275955)
chr8 (135-218)||(17279383-17279466)
chr8 (106-206)||(32444199-32444299)
[»] chr7 (3 HSPs)
chr7 (117-224)||(15560806-15560912)
chr7 (89-321)||(1456024-1456262)
chr7 (122-223)||(10865272-10865373)
[»] chr3 (3 HSPs)
chr3 (105-223)||(19244891-19245009)
chr3 (101-224)||(379961-380083)
chr3 (101-209)||(5836231-5836339)
[»] scaffold0042 (3 HSPs)
scaffold0042 (105-223)||(8880-8998)
scaffold0042 (168-223)||(7011-7066)
scaffold0042 (168-223)||(14423-14478)
[»] chr2 (1 HSPs)
chr2 (112-224)||(22828420-22828531)
[»] chr6 (3 HSPs)
chr6 (105-239)||(5130162-5130296)
chr6 (105-239)||(26619564-26619698)
chr6 (105-239)||(26725477-26725611)


Alignment Details
Target: chr5 (Bit Score: 243; Significance: 1e-135; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 18 - 321
Target Start/End: Original strand, 17302756 - 17303065
Alignment:
Q  18 tgtttatggctgaattatatggaacattagttaaaattcgtacggacactttcgtcttgaccttgttctgggtaacctggacgtgaataattgttgaagt 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| ||||||||||||||||||    
T  17302756 tgtttatggctgaattatatggaacattagttaaaattcgtacggacattttcgtcttgaccttgttctgggtaaactggaagtgaataattgttgaagt 17302855  T
Q  118 tttagattctacgttcaattcccttcaattcggatataaatttcgtatgattcagattagaaatgaattcggaaaacacattcgaagtttggtaaattct 217  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||| ||||||| |||||||||||||||||||||    
T  17302856 tttagattctacgttcaattcccttcaattcggatataaattttgtatgattcggattagaaatgaattcagaaaacatattcgaagtttggtaaattct 17302955  T
Q  218 gctggaaaacacttacgggttttgtcatgaattttgagaaataagctgttttgg------gaaggcagaagtgattatggggaactaaacagaagcatca 311  Q
    | ||||||| ||||||||||||||||||| ||||||||||||||||||||||||      |||||||||||||||||||||||| |||||||||||||||    
T  17302956 gttggaaaatacttacgggttttgtcatggattttgagaaataagctgttttgggaagatgaaggcagaagtgattatggggaattaaacagaagcatca 17303055  T
Q  312 agaaggatta 321  Q
    ||||||||||    
T  17303056 agaaggatta 17303065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 59; Significance: 6e-25; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 118 - 192
Target Start/End: Original strand, 10214685 - 10214759
Alignment:
Q  118 tttagattctacgttcaattcccttcaattcggatataaatttcgtatgattcagattagaaatgaattcggaaa 192  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||| | |||||||||    
T  10214685 tttagattctacgtttaattcccttcaattcggatataaatttcgtatgattcggattagaaacggattcggaaa 10214759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 122 - 192
Target Start/End: Complemental strand, 11825644 - 11825574
Alignment:
Q  122 gattctacgttcaattcccttcaattcggatataaatttcgtatgattcagattagaaatgaattcggaaa 192  Q
    ||||||||| | |||||||||||||||| |||||| ||| || |||||| || |||||| ||| |||||||    
T  11825644 gattctacgcttaattcccttcaattcgaatataagttttgtgtgattcggactagaaacgaactcggaaa 11825574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 58; Significance: 2e-24; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 84 - 221
Target Start/End: Complemental strand, 14191521 - 14191384
Alignment:
Q  84 tctgggtaacctggacgtgaataattgttgaagttttagattctacgttcaattcccttcaattcggatataaatttcgtatgattcagattagaaatga 183  Q
    |||| |||||||| |  ||| |||||||||||||||| |||| |||  ||||||||||||||||||||||||| |||| | | |||| || ||| |||||    
T  14191521 tctgtgtaacctgaaattgagtaattgttgaagttttggattgtacactcaattcccttcaattcggatataagtttcatgtaattcggaataggaatga 14191422  T
Q  184 attcggaaaacacattcgaagtttggtaaattctgctg 221  Q
    ||||||||||||  || |||||||||||| ||||||||    
T  14191421 attcggaaaacatgtttgaagtttggtaatttctgctg 14191384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 113 - 239
Target Start/End: Complemental strand, 24627810 - 24627684
Alignment:
Q  113 gaagttttagattctacgttcaattcccttcaattcggatataaatttcgtatgattcagattagaaatgaattcggaaaacacattcgaagtttggtaa 212  Q
    |||||||  ||||||||  | ||||||||| | || |||||||| ||| ||||| ||| |||||| ||| ||||| |||||||||||  |||||||| ||    
T  24627810 gaagtttcggattctacacttaattccctttagtttggatataatttttgtatgtttcggattaggaataaattcagaaaacacatttaaagtttggaaa 24627711  T
Q  213 attctgctggaaaacacttacgggttt 239  Q
     || |||| ||||  ||||||||||||    
T  24627710 tttatgcttgaaattacttacgggttt 24627684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 105 - 221
Target Start/End: Complemental strand, 1507054 - 1506938
Alignment:
Q  105 taattgttgaagttttagattctacgttcaattcccttcaattcggatataaatttcgtatgattcagattagaaatgaattcggaaaacacattcgaag 204  Q
    |||||||||||||||  ||||||||  | | ||||||||| |||||||||||| || | ||||||| |||||  |||| | || |||||| ||||  |||    
T  1507054 taattgttgaagtttcggattctacacttatttcccttcagttcggatataaactttgcatgattcggattaagaatggactcagaaaacgcatttaaag 1506955  T
Q  205 tttggtaaattctgctg 221  Q
    ||||  |||||||||||    
T  1506954 tttgtaaaattctgctg 1506938  T

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Target: chr8 (Bit Score: 52; Significance: 9e-21; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 104 - 219
Target Start/End: Complemental strand, 17275955 - 17275840
Alignment:
Q  104 ataattgttgaagttttagattctacgttcaattcccttcaattcggatataaatttcgtatgattcagattagaaatgaattcggaaaacacattcgaa 203  Q
    |||||||||||| ||||   |||||| ||  |||||||||| || ||||||| |||| ||||||||| ||||||||||| ||||| ||||| |||| |||    
T  17275955 ataattgttgaattttttatttctacatttgattcccttcagtttggatatagatttggtatgattctgattagaaatggattcgaaaaacgcatttgaa 17275856  T
Q  204 gtttggtaaattctgc 219  Q
    ||||||||||||||||    
T  17275855 gtttggtaaattctgc 17275840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 135 - 218
Target Start/End: Complemental strand, 17279466 - 17279383
Alignment:
Q  135 attcccttcaattcggatataaatttcgtatgattcagattagaaatgaattcggaaaacacattcgaagtttggtaaattctg 218  Q
    |||||||||| || ||||||| |||| ||||||||| ||||||||| | ||||| ||||| |||| ||||||||||||||||||    
T  17279466 attcccttcagtttggatatagatttggtatgattcggattagaaacggattcgaaaaacgcatttgaagtttggtaaattctg 17279383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 106 - 206
Target Start/End: Complemental strand, 32444299 - 32444199
Alignment:
Q  106 aattgttgaagttttagattctacgttcaattcccttcaattcggatataaatttcgtatgattcagattagaaatgaattcggaaaacacattcgaagt 205  Q
    |||||||| | ||| |||||||||  |||||||||| || ||  ||||||||||| ||| |||| |||| |  ||||||||| ||||||||||| |||||    
T  32444299 aattgttggattttaagattctaccctcaattccctacagtttagatataaattttgtacgatttagatcaagaatgaattcagaaaacacattagaagt 32444200  T
Q  206 t 206  Q
    |    
T  32444199 t 32444199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 52; Significance: 9e-21; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 117 - 224
Target Start/End: Original strand, 15560806 - 15560912
Alignment:
Q  117 ttttagattctacgttcaattcccttcaattcggatataaatttcgtatgattcagattagaaatgaattcggaaaacacattcgaagtttggtaaattc 216  Q
    |||| |||||| | |||| |||| ||||||||||||||||||||| |||||||||||||||||| |||||| ||||||   ||||||| ||||| |||||    
T  15560806 ttttggattcttcattcagttcctttcaattcggatataaatttcatatgattcagattagaaacgaattcagaaaacgtcttcgaag-ttggtgaattc 15560904  T
Q  217 tgctggaa 224  Q
    ||||||||    
T  15560905 tgctggaa 15560912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 89 - 321
Target Start/End: Complemental strand, 1456262 - 1456024
Alignment:
Q  89 gtaacctggacgtgaataattgttgaagttttagattctacgttcaattcccttcaattcggatataaatttcgtatgattcagattagaaatgaattcg 188  Q
    |||||||| | || ||||||| ||| || |||||||||| | |||||||||||||||||||||| |||  || || |||||| || ||||||||||| |     
T  1456262 gtaacctgaaagtaaataattcttggagatttagattcttcattcaattcccttcaattcggatttaagatttgtgtgattcggaatagaaatgaatcca 1456163  T
Q  189 gaaaacacattcgaagtttggtaaattc-tgctggaaaacacttacgggttttgtcatgaattttgagaaataagctgttttgg------gaaggcagaa 281  Q
    |||||| |||| | ||||||| |  ||| ||||||||    ||||||||||||| || |  ||||||| |||||||||||||||      ||||||||||    
T  1456162 gaaaacgcatttggagtttgg-attttcatgctggaattggcttacgggttttggcaaggtttttgaggaataagctgttttggaaagatgaaggcagaa 1456064  T
Q  282 gtgattatggggaactaaacagaagcatcaagaaggatta 321  Q
    ||||| ||||| |||||| | ||||| ||||  |||||||    
T  1456063 gtgatcatgggaaactaagctgaagcgtcaatgaggatta 1456024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 122 - 223
Target Start/End: Complemental strand, 10865373 - 10865272
Alignment:
Q  122 gattctacgttcaattcccttcaattcggatataaatttcgtatgattcagattagaaatgaattcggaaaacacattcgaagtttggtaaattctgctg 221  Q
    |||||||||| | |||||||||||||||||||||| |||| | | |||| || ||| |||||||||||||||||  ||  |||||||| || ||||||||    
T  10865373 gattctacgtcccattcccttcaattcggatataagtttcatgtaattcggaataggaatgaattcggaaaacatgtttaaagtttggaaatttctgctg 10865274  T
Q  222 ga 223  Q
    ||    
T  10865273 ga 10865272  T

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Target: chr3 (Bit Score: 51; Significance: 3e-20; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 105 - 223
Target Start/End: Complemental strand, 19245009 - 19244891
Alignment:
Q  105 taattgttgaagttttagattctacgttcaattcccttcaattcggatataaatttcgtatgattcagattagaaatgaattcggaaaacacattcgaag 204  Q
    ||||| ||||||||||||||||| | ||||||||||| || || ||| | ||||||||||| |||||||||||||| || || ||||||||  ||  |||    
T  19245009 taattattgaagttttagattctccattcaattccctacagtttggacacaaatttcgtataattcagattagaaacgagtttggaaaacatgtttaaag 19244910  T
Q  205 tttggtaaattctgctgga 223  Q
    |||||||| ||||||||||    
T  19244909 tttggtaatttctgctgga 19244891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 101 - 224
Target Start/End: Original strand, 379961 - 380083
Alignment:
Q  101 tgaataattgttgaagttttagattctacgttcaattcccttcaattcggatataaatttcgtatgattcagattagaaatgaattcggaaaacacattc 200  Q
    ||||| |||||||||| |||||||||  | |||||||||||||| || | | | ||| || ||||||||  |  |||||| | ||||||||||| ||||     
T  379961 tgaattattgttgaaggtttagattcctcattcaattcccttcagtttgaacacaaactttgtatgatttgggctagaaacggattcggaaaacgcattt 380060  T
Q  201 gaagtttggtaaattctgctggaa 224  Q
    |||| |||||||||||||||||||    
T  380061 gaag-ttggtaaattctgctggaa 380083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 101 - 209
Target Start/End: Complemental strand, 5836339 - 5836231
Alignment:
Q  101 tgaataattgttgaagttttagattctacgttcaattcccttcaattcggatataaatttcgtatgattcagattagaaatgaattcggaaaacacattc 200  Q
    ||||||||| ||||| |||| || |||||  | ||||||||||| || |||||||||||| ||||| ||| |||||| |||| |||  |||||| | ||     
T  5836339 tgaataattattgaatttttggactctacacttaattcccttcagtttggatataaattttgtatgtttcggattaggaatggatttagaaaacgcgttt 5836240  T
Q  201 gaagtttgg 209  Q
    |||||||||    
T  5836239 gaagtttgg 5836231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0042 (Bit Score: 47; Significance: 8e-18; HSPs: 3)
Name: scaffold0042
Description:

Target: scaffold0042; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 105 - 223
Target Start/End: Original strand, 8880 - 8998
Alignment:
Q  105 taattgttgaagttttagattctacgttcaattcccttcaattcggatataaatttcgtatgattcagattagaaatgaattcggaaaacacattcgaag 204  Q
    ||||||||| | ||| |||||| ||  | |||||||||||| ||||||| || ||||||| ||||| || ||| ||||||||||| |||||  ||||||     
T  8880 taattgttgtattttcagattcaacactaaattcccttcaaatcggatacaagtttcgtacgattcggaataggaatgaattcggtaaacatgttcgaaa 8979  T
Q  205 tttggtaaattctgctgga 223  Q
    |||||||||||||||||||    
T  8980 tttggtaaattctgctgga 8998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0042; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 168 - 223
Target Start/End: Original strand, 7011 - 7066
Alignment:
Q  168 ttcagattagaaatgaattcggaaaacacattcgaagtttggtaaattctgctgga 223  Q
    |||||| |||||||||||||||||||||  || |||||||| ||||||||||||||    
T  7011 ttcagaatagaaatgaattcggaaaacatgtttgaagtttgctaaattctgctgga 7066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0042; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 168 - 223
Target Start/End: Original strand, 14423 - 14478
Alignment:
Q  168 ttcagattagaaatgaattcggaaaacacattcgaagtttggtaaattctgctgga 223  Q
    |||||| |||||||||||||||||||||  || |||||||| ||||||||||||||    
T  14423 ttcagaatagaaatgaattcggaaaacatgtttgaagtttgctaaattctgctgga 14478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 112 - 224
Target Start/End: Complemental strand, 22828531 - 22828420
Alignment:
Q  112 tgaagttttagattctacgttcaattcccttcaattcggatataaatttcgtatgattcagattagaaatgaattcggaaaacacattcgaagtttggta 211  Q
    |||||||||||||||  | ||||||||||||||  | ||| | ||| || ||||||||| | ||||||| | ||||| ||||| |||| |||| ||||||    
T  22828531 tgaagttttagattcctcattcaattcccttcagcttggacacaaactttgtatgattcgggttagaaacggattcgaaaaacgcatttgaag-ttggta 22828433  T
Q  212 aattctgctggaa 224  Q
     ||||||||||||    
T  22828432 gattctgctggaa 22828420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 105 - 239
Target Start/End: Original strand, 5130162 - 5130296
Alignment:
Q  105 taattgttgaagttttagattctacgttcaattcccttcaattcggatataaatttcgtatgattcagattagaaatgaattcggaaaacacattcgaag 204  Q
    |||||||||||||||  ||||||||  | | ||||||||| |||||||||||| || | ||||||| |||||  |||| | || || ||| ||||  |||    
T  5130162 taattgttgaagtttcggattctacacttatttcccttcagttcggatataaactttgcatgattcggattaagaatggactcagagaacgcatttaaag 5130261  T
Q  205 tttggtaaattctgctggaaaacacttacgggttt 239  Q
    ||||  ||||||||||| ||   ||||||||||||    
T  5130262 tttgtaaaattctgctgaaatttacttacgggttt 5130296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 105 - 239
Target Start/End: Original strand, 26619564 - 26619698
Alignment:
Q  105 taattgttgaagttttagattctacgttcaattcccttcaattcggatataaatttcgtatgattcagattagaaatgaattcggaaaacacattcgaag 204  Q
    ||||||||||||| |  ||||||||  | | ||||||||| |||||||||||| || | ||||||| |||||  |||| | || |||||| ||||  |||    
T  26619564 taattgttgaagtctcggattctacacttatttcccttcagttcggatataaactttgcatgattcggattaagaatggactcagaaaacgcatttaaag 26619663  T
Q  205 tttggtaaattctgctggaaaacacttacgggttt 239  Q
    ||||  ||||||||||| ||   ||||||||||||    
T  26619664 tttgtaaaattctgctgaaatttacttacgggttt 26619698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 105 - 239
Target Start/End: Original strand, 26725477 - 26725611
Alignment:
Q  105 taattgttgaagttttagattctacgttcaattcccttcaattcggatataaatttcgtatgattcagattagaaatgaattcggaaaacacattcgaag 204  Q
    ||||||||||||| |  ||||||||  | | ||||||||| |||||||||||| || | ||||||| |||||  |||| | || |||||| ||||  |||    
T  26725477 taattgttgaagtctcggattctacacttatttcccttcagttcggatataaactttgcatgattcggattaagaatggactcagaaaacgcatttaaag 26725576  T
Q  205 tttggtaaattctgctggaaaacacttacgggttt 239  Q
    ||||  ||||||||||| ||   ||||||||||||    
T  26725577 tttgtaaaattctgctgaaatttacttacgggttt 26725611  T

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