View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3231_low_57 (Length: 335)
Name: NF3231_low_57
Description: NF3231
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3231_low_57 |
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Alignment Details
Target: chr4 (Bit Score: 215; Significance: 1e-118; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 6029458 - 6029696
Alignment:
| Q |
1 |
ccctagtgagaaatttcaatttatgttcgaatgggaaaacactgaagatgaaggagacatcttggaggaagaagaggaagaagagaacaacctagtggag |
100 |
Q |
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| T |
6029458 |
ccctagtgagaaatttcaatttatgttcgaatgggaaaacactgaagatgaaggagacatcttggaggaagaagaggaagaagagaacaacctagtggag |
6029557 |
T |
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| Q |
101 |
tgtgagaaaaagctaggtttgaaaaaacctaagatgcgtgttatcaaacctagtgagaaatttcgatttactttcgaatgggaagaaact-gaagacatc |
199 |
Q |
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| T |
6029558 |
tgtgagaaaaagctaggtttgaaaaaacctaagatgcgtgttattaaacctagtgagaaatttcgatttactttcgaatgggaagaaactagaagacatc |
6029657 |
T |
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| Q |
200 |
ttagaggatatagaaactgaagacattttggaggacata |
238 |
Q |
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|| |||||||||||||||||||||| |||||||||||| |
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| T |
6029658 |
ttggaggatatagaaactgaagacagcttggaggacata |
6029696 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 218 - 319
Target Start/End: Original strand, 6029649 - 6029750
Alignment:
| Q |
218 |
gaagacattttggaggacatagaaactgaagacagcttggaggacataaacatcctttacccatgactctgaccaggctcaacttctcttcggttgaggt |
317 |
Q |
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| T |
6029649 |
gaagacatcttggaggatatagaaactgaagacagcttggaggacataaacatcctttacccatgactctgaccaggctcaacttctcttcggttgaggt |
6029748 |
T |
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| Q |
318 |
tt |
319 |
Q |
| |
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|| |
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| T |
6029749 |
tt |
6029750 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 105 - 207
Target Start/End: Original strand, 6029280 - 6029382
Alignment:
| Q |
105 |
agaaaaagctaggtttgaaaaaacctaagatgcgtgttatcaaacctagtgagaaatttcgatttactttcgaatgggaagaaactgaagacatcttaga |
204 |
Q |
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| T |
6029280 |
agaaaaagcaaggtttgaaaaaacctaagatgcgtgttatcaagcctagtgagaaatttcgatttacgttcgaatgggaagacactgaagacatcttgga |
6029379 |
T |
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| Q |
205 |
gga |
207 |
Q |
| |
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||| |
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| T |
6029380 |
gga |
6029382 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 74 - 195
Target Start/End: Original strand, 6029378 - 6029505
Alignment:
| Q |
74 |
gaggaagaagagaacaacctagtggagtgtgag------aaaaagctaggtttgaaaaaacctaagatgcgtgttatcaaacctagtgagaaatttcgat |
167 |
Q |
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| T |
6029378 |
gaggaagaagagaacaacctaggggagtgtgagcaggagaaaacgcaaggttcgaaaaaacctaagatgcgtgttatcaaccctagtgagaaatttcaat |
6029477 |
T |
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| Q |
168 |
ttactttcgaatgggaagaaactgaaga |
195 |
Q |
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||| |||||||||||| | |||||||| |
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| T |
6029478 |
ttatgttcgaatgggaaaacactgaaga |
6029505 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 105 - 196
Target Start/End: Original strand, 6034405 - 6034496
Alignment:
| Q |
105 |
agaaaaagctaggtttgaaaaaacctaagatgcgtgttatcaaacctagtgagaaatttcgatttactttcgaatgggaagaaactgaagac |
196 |
Q |
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| T |
6034405 |
agaaaaagctaggttcgaaaaaacctaagatgcgtgttactaaacctagcgagaaatttcgatttacgttcgattgggaaaacactgaagac |
6034496 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 2 - 48
Target Start/End: Original strand, 6029324 - 6029370
Alignment:
| Q |
2 |
cctagtgagaaatttcaatttatgttcgaatgggaaaacactgaaga |
48 |
Q |
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| T |
6029324 |
cctagtgagaaatttcgatttacgttcgaatgggaagacactgaaga |
6029370 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 140 - 195
Target Start/End: Original strand, 56167217 - 56167272
Alignment:
| Q |
140 |
gttatcaaacctagtgagaaatttcgatttactttcgaatgggaagaaactgaaga |
195 |
Q |
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||||| |||||||||||||||||||||||| |||| || |||||| | |||||||| |
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| T |
56167217 |
gttattaaacctagtgagaaatttcgattttcttttgattgggaaaatactgaaga |
56167272 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 2 - 48
Target Start/End: Original strand, 6034449 - 6034495
Alignment:
| Q |
2 |
cctagtgagaaatttcaatttatgttcgaatgggaaaacactgaaga |
48 |
Q |
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| T |
6034449 |
cctagcgagaaatttcgatttacgttcgattgggaaaacactgaaga |
6034495 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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