View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3231_low_58 (Length: 329)

Name: NF3231_low_58
Description: NF3231
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3231_low_58
NF3231_low_58
[»] chr4 (2 HSPs)
chr4 (1-314)||(3691397-3691699)
chr4 (69-108)||(17892326-17892365)
[»] chr5 (2 HSPs)
chr5 (69-176)||(15066148-15066255)
chr5 (1-104)||(19321455-19321557)
[»] chr7 (3 HSPs)
chr7 (69-111)||(21179908-21179950)
chr7 (99-176)||(30403903-30403980)
chr7 (1-57)||(12086967-12087023)
[»] chr2 (2 HSPs)
chr2 (69-111)||(14824213-14824255)
chr2 (69-110)||(2319351-2319392)
[»] chr1 (3 HSPs)
chr1 (69-107)||(41675990-41676028)
chr1 (69-110)||(14167160-14167201)
chr1 (69-109)||(38218460-38218500)
[»] chr3 (2 HSPs)
chr3 (75-119)||(1553951-1553995)
chr3 (75-119)||(1554030-1554074)


Alignment Details
Target: chr4 (Bit Score: 178; Significance: 5e-96; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 178; E-Value: 5e-96
Query Start/End: Original strand, 1 - 314
Target Start/End: Original strand, 3691397 - 3691699
Alignment:
Q  1 ttttccacggtctatccctcgcgtatccctaatgtatctgaaaagtatcatacaattgnnnnnnnnnnaaataaaatttaatctccggatactcttccga 100  Q
    |||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||          ||||||||||||||||||| ||||||||||||    
T  3691397 ttttccacagtctatccctcgcgtatccctgatgtatctgaaaagtatcatacaattgttttttttt-aaataaaatttaatctccgaatactcttccga 3691495  T
Q  101 tacatatcagagcatatcggtcagatatcggtacataatatgtatcggatacgatatataatctattttgaagtatccgtccttgagagcaatcggtaga 200  Q
    |||||||||||||||||           |||||||||||| |||| ||||||| || || ||||||||| ||||||||||||||||||| |||| ||| |    
T  3691496 tacatatcagagcatat-----------cggtacataatacgtattggatacggtacatcatctattttaaagtatccgtccttgagaggaatccgtata 3691584  T
Q  201 atacctgaaacatgttcttgtattagcggggagtgtaatttcctatac-ttttaaatgtgtaatgtgcagatctctatttgcaaagctataactaagata 299  Q
    ||| || ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3691585 atagcttaaacatgttcttgtattagcggggagtgtaatttcctatactttttaaatgtgtaatgtgcagatctctatttgcaaagctataactaagata 3691684  T
Q  300 tgaagtgttgacttt 314  Q
    |||||||||||||||    
T  3691685 tgaagtgttgacttt 3691699  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 69 - 108
Target Start/End: Complemental strand, 17892365 - 17892326
Alignment:
Q  69 aaataaaatttaatctccggatactcttccgatacatatc 108  Q
    |||||||||||||||| |||||||||||| ||||||||||    
T  17892365 aaataaaatttaatcttcggatactcttctgatacatatc 17892326  T

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Target: chr5 (Bit Score: 44; Significance: 5e-16; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 69 - 176
Target Start/End: Complemental strand, 15066255 - 15066148
Alignment:
Q  69 aaataaaatttaatctccggatactcttccgatacatatcagagcatatcggtcagatatcggtacataatatgtatcggatacgatatataatctattt 168  Q
    |||||||||||||||  | |||||||||||||||| |||| ||  ||||||| ||||||||||| || ||||   || |||||||||| || ||||||||    
T  15066255 aaataaaatttaatcatctgatactcttccgatacgtatcggaaaatatcgggcagatatcggtgcagaatacacatgggatacgatacatcatctattt 15066156  T
Q  169 tgaagtat 176  Q
    ||||||||    
T  15066155 tgaagtat 15066148  T

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Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 19321557 - 19321455
Alignment:
Q  1 ttttccacggtctatccctcgcgtatccctaatgtatctgaaaagtatcatacaattgnnnnnnnnnnaaataaaatttaatctccggatactcttccga 100  Q
    |||||||| | |||||||||||||||||   ||||||||||||||||||| |||||||          |||||||||||||||| |||||||||||| ||    
T  19321557 ttttccactgcctatccctcgcgtatccacgatgtatctgaaaagtatcagacaattg-gtttttttaaaataaaatttaatcttcggatactcttctga 19321459  T
Q  101 taca 104  Q
    ||||    
T  19321458 taca 19321455  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 69 - 111
Target Start/End: Complemental strand, 21179950 - 21179908
Alignment:
Q  69 aaataaaatttaatctccggatactcttccgatacatatcaga 111  Q
    |||||||||||||||| |||||||||| | |||||||||||||    
T  21179950 aaataaaatttaatcttcggatactctcctgatacatatcaga 21179908  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 99 - 176
Target Start/End: Complemental strand, 30403980 - 30403903
Alignment:
Q  99 gatacatatcagagcatatcggtcagatatcggtacataatatgtatcggatacgatatataatctattttgaagtat 176  Q
    ||||| |||| || |||||||  ||| ||||||||||| ||| ||||| ||||||||| || ||| ||||||||||||    
T  30403980 gatacgtatcggaacatatcgaacaggtatcggtacatgatacgtatctgatacgatacatcatcaattttgaagtat 30403903  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 12087023 - 12086967
Alignment:
Q  1 ttttccacggtctatccctcgcgtatccctaatgtatctgaaaagtatcatacaatt 57  Q
    |||||||| |||||||||||||||||||  | | ||| |||||||||||| ||||||    
T  12087023 ttttccactgtctatccctcgcgtatcctcactttatttgaaaagtatcaaacaatt 12086967  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 69 - 111
Target Start/End: Complemental strand, 14824255 - 14824213
Alignment:
Q  69 aaataaaatttaatctccggatactcttccgatacatatcaga 111  Q
    |||||||||||||||| |||||||||||| ||||| |||||||    
T  14824255 aaataaaatttaatcttcggatactcttctgatacgtatcaga 14824213  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 69 - 110
Target Start/End: Complemental strand, 2319392 - 2319351
Alignment:
Q  69 aaataaaatttaatctccggatactcttccgatacatatcag 110  Q
    |||||||||||||||| |||||||||||| ||||| ||||||    
T  2319392 aaataaaatttaatcttcggatactcttctgatacgtatcag 2319351  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 69 - 107
Target Start/End: Original strand, 41675990 - 41676028
Alignment:
Q  69 aaataaaatttaatctccggatactcttccgatacatat 107  Q
    |||||||||||||||| ||||||||||||| ||||||||    
T  41675990 aaataaaatttaatcttcggatactcttccaatacatat 41676028  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 69 - 110
Target Start/End: Complemental strand, 14167201 - 14167160
Alignment:
Q  69 aaataaaatttaatctccggatactcttccgatacatatcag 110  Q
    |||||||||||||||| |||||||||||| ||||| ||||||    
T  14167201 aaataaaatttaatcttcggatactcttctgatacgtatcag 14167160  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 69 - 109
Target Start/End: Complemental strand, 38218500 - 38218460
Alignment:
Q  69 aaataaaatttaatctccggatactcttccgatacatatca 109  Q
    |||||||||||||||| |||||||||||| ||||| |||||    
T  38218500 aaataaaatttaatcttcggatactcttctgatacgtatca 38218460  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 75 - 119
Target Start/End: Original strand, 1553951 - 1553995
Alignment:
Q  75 aatttaatctccggatactcttccgatacatatcagagcatatcg 119  Q
    |||||||| |||||||||||||||||||  |||||| ||||||||    
T  1553951 aatttaatttccggatactcttccgatatgtatcagggcatatcg 1553995  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 75 - 119
Target Start/End: Original strand, 1554030 - 1554074
Alignment:
Q  75 aatttaatctccggatactcttccgatacatatcagagcatatcg 119  Q
    |||||||| |||||||||||||||||||  |||||| ||||||||    
T  1554030 aatttaatttccggatactcttccgatatgtatcagggcatatcg 1554074  T

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