View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3231_low_6 (Length: 661)
Name: NF3231_low_6
Description: NF3231
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3231_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 191; Significance: 1e-103; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 360 - 639
Target Start/End: Original strand, 23595080 - 23595355
Alignment:
| Q |
360 |
acaattcatagaggaccgctacttcatcttttttatcttcaccgaactgatcaannnnnnnngtcatatgcacaaaaggttcttcaactccacccaatca |
459 |
Q |
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| T |
23595080 |
acaattcatagaggaccgccacttcatattttttatcttcaccgaactgatcaattttttttgtcat--gcacaaaaggttcttcaacaccacccaatca |
23595177 |
T |
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| Q |
460 |
aaactttttccttatcatttgtcacgcttaaattgtttggccctttattactcaaaccagccacagaattgtctacnnnnnnngtgtcatgtgcttagga |
559 |
Q |
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| T |
23595178 |
aaactttttccttatcatttgtcacgcttaaattgtttggccctttattactcaaagcaaccacacaattgtctac--aaaaagtgtcatgtgcttagga |
23595275 |
T |
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| Q |
560 |
gaaacacttgtttagatacatatctaaatttaaaatttttggacacattcatacaaatgcttttgtttttaaaaagaaat |
639 |
Q |
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| T |
23595276 |
gaaacacttgcttagatacatatctaaatttaaaatttttggacacattcatacaaatgcttttgtttttaaaaagaaat |
23595355 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 172; E-Value: 4e-92
Query Start/End: Original strand, 113 - 345
Target Start/End: Original strand, 23594787 - 23595019
Alignment:
| Q |
113 |
catacaggagcgcaccaggatcaatcctagccgtctaaaccatctctaacaacctttaagatttacgtcacaaaacttggaaacggttatcgttctcctc |
212 |
Q |
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| T |
23594787 |
catacaggagcgcaccaggatcaatcctagccgtctaaaccatctctaacaacctttaagattcacgtcacaaaacttggaaacggttatcgttctcctc |
23594886 |
T |
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| Q |
213 |
agctatataaacgtggctccgtgtcacactccatatacactttcatttaccccaattttcacacagaatacannnnnnncatatactgacttgaacgttg |
312 |
Q |
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| T |
23594887 |
agctatataaatgtgattccgtgtcacactccatatacactttcatttaccctaattttcacatataatacatttttttcatatactgacttgaatgtcg |
23594986 |
T |
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| Q |
313 |
gagtgttaacgtgtttgatgacaccattcttct |
345 |
Q |
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| T |
23594987 |
aagtgttaacgtgtttgatgacaccattcttct |
23595019 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 609 - 652
Target Start/End: Original strand, 23595360 - 23595403
Alignment:
| Q |
609 |
catacaaatgcttttgtttttaaaaagaaatagtttgatgatgt |
652 |
Q |
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| T |
23595360 |
catacaaatgcttttgtttttaaaaagaaatagtttgataatgt |
23595403 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 18 - 119
Target Start/End: Original strand, 23592516 - 23592611
Alignment:
| Q |
18 |
aatgcgaatatgtttaacaaaagagattcaataaagtcaagatccacgttcttcatcttcttaagaaacatcgtgaaggcgtacgtgcacgtcaccatac |
117 |
Q |
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| T |
23592516 |
aatgcaaatatgttcaacaaaagagattcaataaagtcaagacccacat------ttttcttaagaaacaccataaaggtgtacgtgcgcgtcaccatac |
23592609 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 292 - 324
Target Start/End: Complemental strand, 24072561 - 24072529
Alignment:
| Q |
292 |
catatactgacttgaacgttggagtgttaacgt |
324 |
Q |
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| T |
24072561 |
catatactgacttgaacgttggagtgttaacgt |
24072529 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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