View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3231_low_60 (Length: 321)
Name: NF3231_low_60
Description: NF3231
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3231_low_60 |
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Alignment Details
Target: chr6 (Bit Score: 258; Significance: 1e-143; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 1 - 303
Target Start/End: Original strand, 11098337 - 11098638
Alignment:
| Q |
1 |
aaaattaccttaggtaataaggaaactcatcaaatgtaactttactatcttttccatcaacaacaagtctcttgagttcttcaacaatctgctcaccaga |
100 |
Q |
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| T |
11098337 |
aaaattaccttaggtaataaggaaactcatcaaatgtaactttactatcttttccatcaacaacaagtctctttagttcttcaacaatctgctcaccaga |
11098436 |
T |
|
| Q |
101 |
aacctcgtcgatatcgcgattccctccaacccatttctggacagcttgtcctgaactcaatccaagtccaacacctaatccaacaccaacactcaatgct |
200 |
Q |
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| T |
11098437 |
aacctcgtcgatatcgcggatccctcctacccatttctggacagcttgtcctgaactcaatccaagtccaacacctaatccaacaccaacactcaatgct |
11098536 |
T |
|
| Q |
201 |
gacnnnnnnncatgtttctgttccataccctcccagaaacagttttttattttgcaccaaaaaggtataagaattgttcaagaaaatgattttacttgaa |
300 |
Q |
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||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11098537 |
gacaaaaaaacatgtttctgttccataccctcccagaaacag-tttttattttgcaccaaaaaggtataagaattgttcaagaaaatgattttacttgaa |
11098635 |
T |
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| Q |
301 |
caa |
303 |
Q |
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||| |
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| T |
11098636 |
caa |
11098638 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 14 - 77
Target Start/End: Complemental strand, 44931636 - 44931573
Alignment:
| Q |
14 |
gtaataaggaaactcatcaaatgtaactttactatcttttccatcaacaacaagtctcttgagt |
77 |
Q |
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|||||||||||| ||||||||||||||||||||||| |||||||||| || ||| |||||||| |
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| T |
44931636 |
gtaataaggaaagtcatcaaatgtaactttactatcctttccatcaatgactagtttcttgagt |
44931573 |
T |
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