View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3231_low_63 (Length: 315)
Name: NF3231_low_63
Description: NF3231
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3231_low_63 |
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| [»] scaffold0049 (1 HSPs) |
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Alignment Details
Target: scaffold0049 (Bit Score: 95; Significance: 2e-46; HSPs: 1)
Name: scaffold0049
Description:
Target: scaffold0049; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 33 - 135
Target Start/End: Complemental strand, 3669 - 3567
Alignment:
| Q |
33 |
cttcatctctttctcctctcatgttcatcatctttccaaacataaactccaaccctaacaaccaaactttattcccccaaactttgatctcaaaaactca |
132 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3669 |
cttcatctctttctcctctcatgttcatcatctttccaaacataaactcaaatcctaacaaccaaactttattcccccaaactttgatctcaaaaactca |
3570 |
T |
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| Q |
133 |
aac |
135 |
Q |
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||| |
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| T |
3569 |
aac |
3567 |
T |
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Target: chr7 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 33 - 112
Target Start/End: Original strand, 46833348 - 46833427
Alignment:
| Q |
33 |
cttcatctctttctcctctcatgttcatcatctttccaaacataaactccaaccctaacaaccaaactttattcccccaa |
112 |
Q |
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| T |
46833348 |
cttcatctctttctcttctcatgttcatcatctttccaaacataaactcaaaccctaacaaccaaactatattcccccaa |
46833427 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 68; Significance: 2e-30; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 33 - 112
Target Start/End: Original strand, 20673992 - 20674071
Alignment:
| Q |
33 |
cttcatctctttctcctctcatgttcatcatctttccaaacataaactccaaccctaacaaccaaactttattcccccaa |
112 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||| |
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| T |
20673992 |
cttcatctctttctcttctcatgttcatcatctttccaaacataaactcaaaccctaacaaccaaactttattaccccaa |
20674071 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 33 - 63
Target Start/End: Complemental strand, 17288753 - 17288723
Alignment:
| Q |
33 |
cttcatctctttctcctctcatgttcatcat |
63 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
17288753 |
cttcatctctttctcctctcatgttcatcat |
17288723 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 33 - 64
Target Start/End: Original strand, 34800425 - 34800456
Alignment:
| Q |
33 |
cttcatctctttctcctctcatgttcatcatc |
64 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
34800425 |
cttcatctctttctcctctcatgttcatcatc |
34800456 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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