View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3231_low_64 (Length: 315)
Name: NF3231_low_64
Description: NF3231
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3231_low_64 |
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Alignment Details
Target: chr4 (Bit Score: 265; Significance: 1e-148; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 18 - 302
Target Start/End: Original strand, 22042795 - 22043079
Alignment:
| Q |
18 |
ttttggtccaaggatgatgtacaaacagcccgtgttttgttttacctacgagtcattccaactttgattgagtgtttgcccggccctgtattcggagaca |
117 |
Q |
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| T |
22042795 |
ttttggtccaaggatgaagtacaaacagcccgtgttttgctttacctacgagtcattccaactttgattgagtgtttgcgcggccctgtattcggagaca |
22042894 |
T |
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| Q |
118 |
tggtaggtccaactatgttcttctatcctatatcaactaagtacatatttagttttgttttgtttttccacaaattagtttcatttcaagcttttggcca |
217 |
Q |
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|||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22042895 |
tggtagctccaactatgttcttgtatcctatatcaactaagtacatatttagttttgttttgtttttccacaaattagtttcatttcaagcttttggcca |
22042994 |
T |
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| Q |
218 |
aaatttatatatgtagtcttttgtttataatcgattttgagcactagatacactaggcattcattaaataaaatttggggattct |
302 |
Q |
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| T |
22042995 |
aaatttatatatgtagtcttttgtttataatcgattttgagcactagatacactaggcattcattaaataaaatttggggattct |
22043079 |
T |
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Target: chr3 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 18 - 305
Target Start/End: Complemental strand, 2424624 - 2424337
Alignment:
| Q |
18 |
ttttggtccaaggatgatgtacaaacagcccgtgttttgttttacctacgagtcattccaactttgattgagtgtttgcccggccctgtattcggagaca |
117 |
Q |
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||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
2424624 |
ttttggtccaaggatgaagtgcaaacagcccgtgttttgttttacctacgagtcattccaactttgattgagtgtttgcccggccctgtatttggagaca |
2424525 |
T |
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| Q |
118 |
tggtaggtccaactatgttcttctatcctatatcaactaagtacatatttagttttgttttgtttttccacaaattagtttcatttcaagcttttggcca |
217 |
Q |
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|||||| ||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
2424524 |
tggtagctccaactatgttcttgtatcctatatcaactaagtacatatttagttttgctttgtttttccacaaattagtttcatttcaagcttttggcca |
2424425 |
T |
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| Q |
218 |
aaatttatatatgtagtcttttgtttataatcgattttgagcactagatacactaggcattcattaaataaaatttggggattctctg |
305 |
Q |
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||| |||||| |||||| ||||||||||||| ||||||||||||||||||| |||||||||| ||||||||||||||||||||||||| |
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| T |
2424424 |
aaaattatatctgtagtgttttgtttataattgattttgagcactagataccctaggcattcgttaaataaaatttggggattctctg |
2424337 |
T |
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