View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3231_low_66 (Length: 309)

Name: NF3231_low_66
Description: NF3231
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3231_low_66
NF3231_low_66
[»] chr2 (1 HSPs)
chr2 (18-309)||(43901208-43901500)


Alignment Details
Target: chr2 (Bit Score: 256; Significance: 1e-142; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 18 - 309
Target Start/End: Complemental strand, 43901500 - 43901208
Alignment:
Q  18 aaaaatgcccgtttcaagtgcgacacctaattctccatcagg-tatggacattgaggtgctgcacttaagtaaacattttgtgttgaagtgttacgtgac 116  Q
    ||||| |||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43901500 aaaaacgcccgtttcaagtgcgacgcctaattctccatcagggtatggacattgaggtgctgcacttaagtaaacattttgtgttgaagtgttacgtgac 43901401  T
Q  117 ttaagaaaacgtgcaagttcttcccaatgttgttggttttgttttcctttggagnnnnnnncaatatcaaaatcaataccatctaatatagcatcgccaa 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||    
T  43901400 ttaagaaaacgtgcaagttcttcccaatgttgttggttttgttttcctttggagtttttttcaatatcaaaatcaataccatctaatatagcatcgccaa 43901301  T
Q  217 atggacgtgaagatgaatttccacccaaaaacttgttccacaagtaatcagaaacattttttgcatcatcagtggaacctaaaccatattctc 309  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43901300 atggacgtgaagatgaatttccacccaaaaacttgttccacaagtaatcagaaacattttttgcatcatcagtggaacctaaaccatattctc 43901208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University