View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3231_low_67 (Length: 309)

Name: NF3231_low_67
Description: NF3231
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3231_low_67
NF3231_low_67
[»] chr3 (11 HSPs)
chr3 (226-305)||(46634378-46634457)
chr3 (1-195)||(46634494-46634681)
chr3 (70-121)||(45309158-45309209)
chr3 (69-122)||(2105712-2105765)
chr3 (69-122)||(33771684-33771737)
chr3 (69-120)||(51250249-51250300)
chr3 (68-121)||(33223861-33223914)
chr3 (69-114)||(44530488-44530533)
chr3 (69-125)||(1757680-1757736)
chr3 (75-123)||(38573586-38573634)
chr3 (73-121)||(47377364-47377412)
[»] chr4 (4 HSPs)
chr4 (64-125)||(31041376-31041437)
chr4 (68-125)||(18635523-18635580)
chr4 (69-122)||(42845019-42845072)
chr4 (70-119)||(45970724-45970773)
[»] chr1 (8 HSPs)
chr1 (66-125)||(10480705-10480764)
chr1 (69-121)||(31338013-31338065)
chr1 (78-125)||(39949815-39949862)
chr1 (69-119)||(27853349-27853399)
chr1 (68-122)||(31401667-31401721)
chr1 (69-126)||(26086923-26086980)
chr1 (69-122)||(32950775-32950828)
chr1 (69-125)||(52267758-52267814)
[»] scaffold0262 (1 HSPs)
scaffold0262 (68-125)||(15941-15998)
[»] chr6 (6 HSPs)
chr6 (68-121)||(10320446-10320499)
chr6 (69-124)||(29335587-29335642)
chr6 (68-121)||(331901-331954)
chr6 (69-132)||(8810634-8810698)
chr6 (72-133)||(29283812-29283875)
chr6 (69-121)||(31140827-31140879)
[»] chr7 (4 HSPs)
chr7 (69-121)||(29726794-29726846)
chr7 (75-125)||(1627946-1627996)
chr7 (69-118)||(32263001-32263050)
chr7 (69-121)||(38911293-38911345)
[»] chr5 (6 HSPs)
chr5 (67-122)||(18589881-18589936)
chr5 (80-125)||(3416572-3416617)
chr5 (73-122)||(15725328-15725377)
chr5 (69-122)||(33645703-33645756)
chr5 (68-120)||(27174820-27174872)
chr5 (69-121)||(30893927-30893979)
[»] chr2 (7 HSPs)
chr2 (69-124)||(42475122-42475177)
chr2 (68-125)||(2256964-2257021)
chr2 (68-121)||(4711424-4711476)
chr2 (64-121)||(21497656-21497713)
chr2 (69-110)||(33263727-33263768)
chr2 (69-121)||(35727431-35727483)
chr2 (69-121)||(37320532-37320584)
[»] chr8 (5 HSPs)
chr8 (67-121)||(7679894-7679948)
chr8 (75-121)||(24199820-24199866)
chr8 (69-121)||(10732790-10732842)
chr8 (69-121)||(33445564-33445616)
chr8 (74-114)||(36919310-36919350)
[»] scaffold0896 (1 HSPs)
scaffold0896 (69-132)||(3135-3199)


Alignment Details
Target: chr3 (Bit Score: 80; Significance: 2e-37; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 226 - 305
Target Start/End: Complemental strand, 46634457 - 46634378
Alignment:
Q  226 cagcccattaaaatatgatttttgtgcatagcctcgtgccaagctcttttcacacttttttgtgttctttcatctcactc 305  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46634457 cagcccattaaaatatgatttttgtgcatagcctcgtgccaagctcttttcacacttttttgtgttctttcatctcactc 46634378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 1 - 195
Target Start/End: Complemental strand, 46634681 - 46634494
Alignment:
Q  1 taaaaacattcgagtatataattagaacaaaacatattttcgtaaaaaagatagacgagcatgaaatagtcctcgtgagcttaactcagatggcaaaaac 100  Q
    ||||||| |||||||||||||||||||||         ||||||||| ||||||||||||||||||||||||||||||||||||||||||| | ||  ||    
T  46634681 taaaaacgttcgagtatataattagaaca---------ttcgtaaaagagatagacgagcatgaaatagtcctcgtgagcttaactcagatagtaaggac 46634591  T
Q  101 aatgtataatatatacaaggtctg--gttcaaacttctnnnnnnnnnnnnnncgagcatgaaataatatattgtgtaaaagcatagtctctctctat 195  Q
    |||| ||||||||| || |||| |  || ||||||| |              |||||||||||||||||||||||||||||||||||||||||||||    
T  46634590 aatgcataatatatgcatggtccgaagtacaaacttattctaccaaaaaaaacgagcatgaaataatatattgtgtaaaagcatagtctctctctat 46634494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 70 - 121
Target Start/End: Complemental strand, 45309209 - 45309158
Alignment:
Q  70 tcctcgtgagcttaactcagatggcaaaaacaatgtataatatatacaaggt 121  Q
    |||||||||||||||||||| ||| | ||||||| |||||||||||||||||    
T  45309209 tcctcgtgagcttaactcagttggtataaacaatttataatatatacaaggt 45309158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 69 - 122
Target Start/End: Complemental strand, 2105765 - 2105712
Alignment:
Q  69 gtcctcgtgagcttaactcagatggcaaaaacaatgtataatatatacaaggtc 122  Q
    |||||||||| |||||||||| ||| ||||| |||||||||||||| |||||||    
T  2105765 gtcctcgtgaacttaactcagttggtaaaaataatgtataatatatgcaaggtc 2105712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 69 - 122
Target Start/End: Original strand, 33771684 - 33771737
Alignment:
Q  69 gtcctcgtgagcttaactcagatggcaaaaacaatgtataatatatacaaggtc 122  Q
    ||||||||||||||||||||| ||| ||  |||||||||||||||| |||||||    
T  33771684 gtcctcgtgagcttaactcagttggtaaggacaatgtataatatatgcaaggtc 33771737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 69 - 120
Target Start/End: Complemental strand, 51250300 - 51250249
Alignment:
Q  69 gtcctcgtgagcttaactcagatggcaaaaacaatgtataatatatacaagg 120  Q
    ||||||||||||||||||||| ||| ||  |||||||||||||||| |||||    
T  51250300 gtcctcgtgagcttaactcagttggtaaggacaatgtataatatatgcaagg 51250249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 68 - 121
Target Start/End: Original strand, 33223861 - 33223914
Alignment:
Q  68 agtcctcgtgagcttaactcagatggcaaaaacaatgtataatatatacaaggt 121  Q
    |||||||||||||||| ||||| ||| | |||||||| ||||||||| ||||||    
T  33223861 agtcctcgtgagcttagctcagttggtagaaacaatgcataatatatgcaaggt 33223914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 69 - 114
Target Start/End: Complemental strand, 44530533 - 44530488
Alignment:
Q  69 gtcctcgtgagcttaactcagatggcaaaaacaatgtataatatat 114  Q
    |||||||||||||| |||||| || |||||| ||||||||||||||    
T  44530533 gtcctcgtgagcttgactcagctgacaaaaataatgtataatatat 44530488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 69 - 125
Target Start/End: Complemental strand, 1757736 - 1757680
Alignment:
Q  69 gtcctcgtgagcttaactcagatggcaaaaacaatgtataatatatacaaggtctgg 125  Q
    ||||||||||||||||||||| ||| |  ||||||| ||||||||| ||| ||||||    
T  1757736 gtcctcgtgagcttaactcagttggtaggaacaatgcataatatatgcaacgtctgg 1757680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 75 - 123
Target Start/End: Complemental strand, 38573634 - 38573586
Alignment:
Q  75 gtgagcttaactcagatggcaaaaacaatgtataatatatacaaggtct 123  Q
    ||||||||||||||| ||  || ||||||| ||||||||||||||||||    
T  38573634 gtgagcttaactcagttgataagaacaatgcataatatatacaaggtct 38573586  T

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Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 73 - 121
Target Start/End: Complemental strand, 47377412 - 47377364
Alignment:
Q  73 tcgtgagcttaactcagatggcaaaaacaatgtataatatatacaaggt 121  Q
    ||||||||||||||||| ||| ||  |||||| ||||||||||||||||    
T  47377412 tcgtgagcttaactcagttggtaaggacaatgcataatatatacaaggt 47377364  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 64 - 125
Target Start/End: Complemental strand, 31041437 - 31041376
Alignment:
Q  64 aaatagtcctcgtgagcttaactcagatggcaaaaacaatgtataatatatacaaggtctgg 125  Q
    |||| ||||||||||||||||||||  ||| | |||||||||||||||||| ||||||||||    
T  31041437 aaattgtcctcgtgagcttaactcatttggtagaaacaatgtataatatatgcaaggtctgg 31041376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 68 - 125
Target Start/End: Original strand, 18635523 - 18635580
Alignment:
Q  68 agtcctcgtgagcttaactcagatggcaaaaacaatgtataatatatacaaggtctgg 125  Q
    ||||| |||||||||||||||| ||  ||  |||||| ||||||||||||||||||||    
T  18635523 agtccccgtgagcttaactcagttgataaggacaatgcataatatatacaaggtctgg 18635580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 69 - 122
Target Start/End: Original strand, 42845019 - 42845072
Alignment:
Q  69 gtcctcgtgagcttaactcagatggcaaaaacaatgtataatatatacaaggtc 122  Q
    ||||||||||||||||||||| ||| ||  |||||| ||||||||| |||||||    
T  42845019 gtcctcgtgagcttaactcagttggaaaggacaatgcataatatatgcaaggtc 42845072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 70 - 119
Target Start/End: Complemental strand, 45970773 - 45970724
Alignment:
Q  70 tcctcgtgagcttaactcagatggcaaaaacaatgtataatatatacaag 119  Q
    |||||||||||||||||||| ||| | |||||||| ||||||||| ||||    
T  45970773 tcctcgtgagcttaactcagttggtagaaacaatgcataatatatgcaag 45970724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 66 - 125
Target Start/End: Original strand, 10480705 - 10480764
Alignment:
Q  66 atagtcctcgtgagcttaactcagatggcaaaaacaatgtataatatatacaaggtctgg 125  Q
    |||||||||||||||||||||||||||| ||  |||||| |||||||||  |||||||||    
T  10480705 atagtcctcgtgagcttaactcagatggtaaggacaatgcataatatatgtaaggtctgg 10480764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 69 - 121
Target Start/End: Original strand, 31338013 - 31338065
Alignment:
Q  69 gtcctcgtgagcttaactcagatggcaaaaacaatgtataatatatacaaggt 121  Q
    ||||||||||||||||||||| |||||  || |||| ||||||||||||||||    
T  31338013 gtcctcgtgagcttaactcagttggcatgaataatgcataatatatacaaggt 31338065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 78 - 125
Target Start/End: Original strand, 39949815 - 39949862
Alignment:
Q  78 agcttaactcagatggcaaaaacaatgtataatatatacaaggtctgg 125  Q
    |||||||||||| ||| || ||||||| ||||||||||||||||||||    
T  39949815 agcttaactcagttggtaagaacaatgcataatatatacaaggtctgg 39949862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 69 - 119
Target Start/End: Original strand, 27853349 - 27853399
Alignment:
Q  69 gtcctcgtgagcttaactcagatggcaaaaacaatgtataatatatacaag 119  Q
    ||||||||||||||||||||| ||| |  ||||||| ||||||||||||||    
T  27853349 gtcctcgtgagcttaactcagttggtatgaacaatgcataatatatacaag 27853399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 68 - 122
Target Start/End: Complemental strand, 31401721 - 31401667
Alignment:
Q  68 agtcctcgtgagcttaactcagatggcaaaaacaatgtataatatatacaaggtc 122  Q
    ||||| |||||| ||||||||| || ||||||||||| ||||||||| |||||||    
T  31401721 agtccccgtgagtttaactcagttgacaaaaacaatgcataatatatgcaaggtc 31401667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 69 - 126
Target Start/End: Original strand, 26086923 - 26086980
Alignment:
Q  69 gtcctcgtgagcttaactcagatggcaaaaacaatgtataatatatacaaggtctggt 126  Q
    ||||||||||||||||||||| ||| |  | ||||| ||||||||||||| |||||||    
T  26086923 gtcctcgtgagcttaactcagttggtatgatcaatgcataatatatacaatgtctggt 26086980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 69 - 122
Target Start/End: Complemental strand, 32950828 - 32950775
Alignment:
Q  69 gtcctcgtgagcttaactcagatggcaaaaacaatgtataatatatacaaggtc 122  Q
    |||| |||||||||||||||| ||| | |||||||| ||||||||| |||||||    
T  32950828 gtccacgtgagcttaactcagttggtataaacaatgcataatatatgcaaggtc 32950775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 69 - 125
Target Start/End: Original strand, 52267758 - 52267814
Alignment:
Q  69 gtcctcgtgagcttaactcagatggcaaaaacaatgtataatatatacaaggtctgg 125  Q
    ||||||||||||||||||||| ||| ||  |||||| |||| |||| ||||||||||    
T  52267758 gtcctcgtgagcttaactcagttggtaaggacaatgcataaaatatgcaaggtctgg 52267814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0262 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0262
Description:

Target: scaffold0262; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 68 - 125
Target Start/End: Complemental strand, 15998 - 15941
Alignment:
Q  68 agtcctcgtgagcttaactcagatggcaaaaacaatgtataatatatacaaggtctgg 125  Q
    |||||||||||||||||||||  ||| ||  |||||||||||||||| ||||||||||    
T  15998 agtcctcgtgagcttaactcaattggtaaggacaatgtataatatatgcaaggtctgg 15941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000004; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 68 - 121
Target Start/End: Complemental strand, 10320499 - 10320446
Alignment:
Q  68 agtcctcgtgagcttaactcagatggcaaaaacaatgtataatatatacaaggt 121  Q
    |||||||||||||||||||||| ||| || |||||||||| ||||||| |||||    
T  10320499 agtcctcgtgagcttaactcagttggtaagaacaatgtatcatatatataaggt 10320446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 69 - 124
Target Start/End: Complemental strand, 29335642 - 29335587
Alignment:
Q  69 gtcctcgtgagcttaactcagatggcaaaaacaatgtataatatatacaaggtctg 124  Q
    ||||||||||||||||||||| | | | |||||||| ||||||||| |||||||||    
T  29335642 gtcctcgtgagcttaactcagttagtataaacaatgcataatatatgcaaggtctg 29335587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 68 - 121
Target Start/End: Complemental strand, 331954 - 331901
Alignment:
Q  68 agtcctcgtgagcttaactcagatggcaaaaacaatgtataatatatacaaggt 121  Q
    |||||||||||||||||||||| ||| | | |||||| ||||||||| ||||||    
T  331954 agtcctcgtgagcttaactcagttggtagagacaatgcataatatatgcaaggt 331901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 69 - 132
Target Start/End: Original strand, 8810634 - 8810698
Alignment:
Q  69 gtcctcgtgagcttaactcagatggcaaaaacaatgtataatatatacaaggtctg-gttcaaac 132  Q
    ||||||||||||||| ||||| ||| ||| |||||  ||||||||| ||||||||| ||||||||    
T  8810634 gtcctcgtgagcttagctcagttggtaaagacaatacataatatatgcaaggtctgagttcaaac 8810698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 72 - 133
Target Start/End: Original strand, 29283812 - 29283875
Alignment:
Q  72 ctcgtgagcttaactcagatggcaaaaacaatgtataatatatacaaggtct--ggttcaaact 133  Q
    ||||| |||||||||||| ||| | | |||||||||||||||| ||||||||  ||||||||||    
T  29283812 ctcgtaagcttaactcagttggtagagacaatgtataatatatgcaaggtctagggttcaaact 29283875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 69 - 121
Target Start/End: Complemental strand, 31140879 - 31140827
Alignment:
Q  69 gtcctcgtgagcttaactcagatggcaaaaacaatgtataatatatacaaggt 121  Q
    ||||||||||||||||||||| ||  ||| | |||||||||||||| ||||||    
T  31140879 gtcctcgtgagcttaactcagctgataaagataatgtataatatatgcaaggt 31140827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 69 - 121
Target Start/End: Original strand, 29726794 - 29726846
Alignment:
Q  69 gtcctcgtgagcttaactcagatggcaaaaacaatgtataatatatacaaggt 121  Q
    ||||||||||||||||||||| || ||  ||||||||||||||||| ||||||    
T  29726794 gtcctcgtgagcttaactcagttgacatgaacaatgtataatatatgcaaggt 29726846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 75 - 125
Target Start/End: Complemental strand, 1627996 - 1627946
Alignment:
Q  75 gtgagcttaactcagatggcaaaaacaatgtataatatatacaaggtctgg 125  Q
    ||||||||||||||| ||||||| |||||| || |||||| ||||||||||    
T  1627996 gtgagcttaactcagttggcaaagacaatgcatgatatatgcaaggtctgg 1627946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 69 - 118
Target Start/End: Original strand, 32263001 - 32263050
Alignment:
Q  69 gtcctcgtgagcttaactcagatggcaaaaacaatgtataatatatacaa 118  Q
    ||||||||||||||| ||||| ||| | | ||||||||||||||||||||    
T  32263001 gtcctcgtgagcttagctcagttggtatagacaatgtataatatatacaa 32263050  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 69 - 121
Target Start/End: Original strand, 38911293 - 38911345
Alignment:
Q  69 gtcctcgtgagcttaactcagatggcaaaaacaatgtataatatatacaaggt 121  Q
    |||| |||||||||||||||| ||  ||| |||||||||||||||| ||||||    
T  38911293 gtccccgtgagcttaactcagttgataaagacaatgtataatatatgcaaggt 38911345  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000007; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 67 - 122
Target Start/End: Complemental strand, 18589936 - 18589881
Alignment:
Q  67 tagtcctcgtgagcttaactcagatggcaaaaacaatgtataatatatacaaggtc 122  Q
    ||||||||||||||||||||||| ||| |  ||||||| ||||||||| |||||||    
T  18589936 tagtcctcgtgagcttaactcagttggtatgaacaatgcataatatatgcaaggtc 18589881  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 80 - 125
Target Start/End: Complemental strand, 3416617 - 3416572
Alignment:
Q  80 cttaactcagatggcaaaaacaatgtataatatatacaaggtctgg 125  Q
    |||||||||| ||  | |||||||||||||||||||||||||||||    
T  3416617 cttaactcagttgatagaaacaatgtataatatatacaaggtctgg 3416572  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 73 - 122
Target Start/End: Complemental strand, 15725377 - 15725328
Alignment:
Q  73 tcgtgagcttaactcagatggcaaaaacaatgtataatatatacaaggtc 122  Q
    ||||||||||||||||| | | |  |||||||||||||||||||||||||    
T  15725377 tcgtgagcttaactcagttagtatgaacaatgtataatatatacaaggtc 15725328  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 69 - 122
Target Start/End: Complemental strand, 33645756 - 33645703
Alignment:
Q  69 gtcctcgtgagcttaactcagatggcaaaaacaatgtataatatatacaaggtc 122  Q
    ||||||||||||||||||||| ||| |   |||||||||||||||| |||||||    
T  33645756 gtcctcgtgagcttaactcagttggtatggacaatgtataatatatgcaaggtc 33645703  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 68 - 120
Target Start/End: Original strand, 27174820 - 27174872
Alignment:
Q  68 agtcctcgtgagcttaactcagatggcaaaaacaatgtataatatatacaagg 120  Q
    |||||||||||||||| ||||| ||||||  |||||| |||| ||||||||||    
T  27174820 agtcctcgtgagcttagctcagttggcaaggacaatgcataaaatatacaagg 27174872  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 69 - 121
Target Start/End: Original strand, 30893927 - 30893979
Alignment:
Q  69 gtcctcgtgagcttaactcagatggcaaaaacaatgtataatatatacaaggt 121  Q
    ||||||||||||||||||||| | | ||| |||||| ||||||||| ||||||    
T  30893927 gtcctcgtgagcttaactcagtttgtaaagacaatgcataatatatgcaaggt 30893979  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000007; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 69 - 124
Target Start/End: Complemental strand, 42475177 - 42475122
Alignment:
Q  69 gtcctcgtgagcttaactcagatggcaaaaacaatgtataatatatacaaggtctg 124  Q
    ||||||||||||||||||||| ||| | |||||||| |||| |||| |||||||||    
T  42475177 gtcctcgtgagcttaactcagttggtataaacaatgcataaaatatgcaaggtctg 42475122  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 68 - 125
Target Start/End: Original strand, 2256964 - 2257021
Alignment:
Q  68 agtcctcgtgagcttaactcagatggcaaaaacaatgtataatatatacaaggtctgg 125  Q
    |||||||||||||||||||||| ||| |   |||||| ||||||||| ||||||||||    
T  2256964 agtcctcgtgagcttaactcagttggtatggacaatgcataatatatgcaaggtctgg 2257021  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 68 - 121
Target Start/End: Original strand, 4711424 - 4711476
Alignment:
Q  68 agtcctcgtgagcttaactcagatggcaaaaacaatgtataatatatacaaggt 121  Q
    |||||||||||||||||||||| | | ||||||||| |||||||||| ||||||    
T  4711424 agtcctcgtgagcttaactcag-tcgtaaaaacaatttataatatatgcaaggt 4711476  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 64 - 121
Target Start/End: Original strand, 21497656 - 21497713
Alignment:
Q  64 aaatagtcctcgtgagcttaactcagatggcaaaaacaatgtataatatatacaaggt 121  Q
    |||||||| ||||||||||||||| | ||| || ||||||| ||||||||| ||||||    
T  21497656 aaatagtcatcgtgagcttaactcggttggtaagaacaatgcataatatatgcaaggt 21497713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 69 - 110
Target Start/End: Original strand, 33263727 - 33263768
Alignment:
Q  69 gtcctcgtgagcttaactcagatggcaaaaacaatgtataat 110  Q
    ||||||||||||||||||||| | | ||||||||||||||||    
T  33263727 gtcctcgtgagcttaactcagttagtaaaaacaatgtataat 33263768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 69 - 121
Target Start/End: Original strand, 35727431 - 35727483
Alignment:
Q  69 gtcctcgtgagcttaactcagatggcaaaaacaatgtataatatatacaaggt 121  Q
    |||| |||||||||||||||| ||| || ||||||| ||||||||| ||||||    
T  35727431 gtccccgtgagcttaactcagttggtaagaacaatgcataatatatgcaaggt 35727483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 69 - 121
Target Start/End: Complemental strand, 37320584 - 37320532
Alignment:
Q  69 gtcctcgtgagcttaactcagatggcaaaaacaatgtataatatatacaaggt 121  Q
    |||| |||||||||||||||| ||| ||| |||||| ||||||||| ||||||    
T  37320584 gtccacgtgagcttaactcagttggtaaagacaatgcataatatatgcaaggt 37320532  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 67 - 121
Target Start/End: Original strand, 7679894 - 7679948
Alignment:
Q  67 tagtcctcgtgagcttaactcagatggcaaaaacaatgtataatatatacaaggt 121  Q
    |||||| ||| |||||||||||| ||||||| |||||| ||||||||| ||||||    
T  7679894 tagtccccgtaagcttaactcagttggcaaagacaatgcataatatatgcaaggt 7679948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 75 - 121
Target Start/End: Complemental strand, 24199866 - 24199820
Alignment:
Q  75 gtgagcttaactcagatggcaaaaacaatgtataatatatacaaggt 121  Q
    ||||||||||||||| ||| ||| |||||||||||||||| ||||||    
T  24199866 gtgagcttaactcagttggtaaacacaatgtataatatatgcaaggt 24199820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 69 - 121
Target Start/End: Complemental strand, 10732842 - 10732790
Alignment:
Q  69 gtcctcgtgagcttaactcagatggcaaaaacaatgtataatatatacaaggt 121  Q
    ||||||||||||||||||||  ||| |  ||||||| ||||||||||||||||    
T  10732842 gtcctcgtgagcttaactcaattggtatgaacaatgcataatatatacaaggt 10732790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 69 - 121
Target Start/End: Original strand, 33445564 - 33445616
Alignment:
Q  69 gtcctcgtgagcttaactcagatggcaaaaacaatgtataatatatacaaggt 121  Q
    ||||||||||||||| ||||| ||| |  ||||||| ||||||||||||||||    
T  33445564 gtcctcgtgagcttagctcagttggtaggaacaatgcataatatatacaaggt 33445616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 74 - 114
Target Start/End: Original strand, 36919310 - 36919350
Alignment:
Q  74 cgtgagcttaactcagatggcaaaaacaatgtataatatat 114  Q
    |||||||||||||||| ||| || |||||||||||||||||    
T  36919310 cgtgagcttaactcagttggtaagaacaatgtataatatat 36919350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0896 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0896
Description:

Target: scaffold0896; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 69 - 132
Target Start/End: Original strand, 3135 - 3199
Alignment:
Q  69 gtcctcgtgagcttaactcagatggcaaaaacaatgtataatatatacaaggtctg-gttcaaac 132  Q
    ||||||||||||||| ||||| ||| ||| |||||  ||||||||| ||||||||| ||||||||    
T  3135 gtcctcgtgagcttagctcagttggtaaagacaatacataatatatgcaaggtctgagttcaaac 3199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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