View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3231_low_68 (Length: 297)
Name: NF3231_low_68
Description: NF3231
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3231_low_68 |
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Alignment Details
Target: chr1 (Bit Score: 256; Significance: 1e-142; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 7 - 287
Target Start/End: Original strand, 43187215 - 43187495
Alignment:
| Q |
7 |
ctctgcacctgattttaattcctttaacgttttttaaatgagtggtagaaaacatttgttgcttgttggcttggctttatgtgtttagtttctaannnnn |
106 |
Q |
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| T |
43187215 |
ctctgcacctgattttaattcctttaacgttttttaaatgagtggtagaaaacatttgttgcttgttggcttggctttatgtgtttagtttctaattttt |
43187314 |
T |
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| Q |
107 |
nnaatgttatctgcagatactgaaaacaatttgcgtgacaatactcctgaaacatttgatcaacggtgagttgtttattcattatttgtaaattgggcat |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43187315 |
ttaatgttatctgcagatactgaaaacaatttgcgtgacaatactcctgaaacatttgatcaacggtgagttgtttattcattatttgtaaattgggcat |
43187414 |
T |
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| Q |
207 |
attgcatagccgactgacggtgcctgatagattgttatatccttgacagggatgccatcctcgcttccattccaacctatg |
287 |
Q |
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| T |
43187415 |
attgcatagccgactgacggtgcctgatagattgctatatccttgacagggatgccatcctcgcttccattccaacctatg |
43187495 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 36 - 287
Target Start/End: Original strand, 43208037 - 43208291
Alignment:
| Q |
36 |
ttttttaaatgagtggtagaaaacatt--tgttgcttg--ttggcttggctttatgtgtttagtttctaannnnnnnaatgttatctgcagatactgaaa |
131 |
Q |
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||||||||||||||||||||||||||| || | |||| ||||||| ||||||||| ||||||||| || ||||||||||||||||| |||| |
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| T |
43208037 |
ttttttaaatgagtggtagaaaacattgttgcttcttggtttggctttgctttatgtttttagtttccaattttttccatgttatctgcagatac-gaaa |
43208135 |
T |
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| Q |
132 |
acaatttgcgtgacaatactcctgaaacatttgatcaacggtgagttgtttattcattatttgtaaattgggcatattgcatagccgactgacggtgcct |
231 |
Q |
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| T |
43208136 |
acaatttgcgcgacaatactcctaaaacatttgatcaacggtgagttgtttattcattatttgttaatcaggtatattgaataaccgatgaatggtgcct |
43208235 |
T |
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| Q |
232 |
gatagattgttatatccttgacagggatgccatcctcgcttccattccaacctatg |
287 |
Q |
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| T |
43208236 |
gatagattggtatatccttgacaaggatgctatcctcgcttctattccaagctatg |
43208291 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 109 - 287
Target Start/End: Original strand, 43189330 - 43189505
Alignment:
| Q |
109 |
aatgttatctgcagatactgaaaacaatttgcgtgacaatactcctgaaacatttgatcaacggtgagttgtttattcattatttgtaaattgggcatat |
208 |
Q |
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| T |
43189330 |
aatgttaactgcagatactgaaaacaatttgctttaaaatactcctgaaacatttgacccaaggtgagctgtttattcatt---tgtaaattgggcattt |
43189426 |
T |
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| Q |
209 |
tgcatagccgactgacggtgcctgatagattgttatatccttgacagggatgccatcctcgcttccattccaacctatg |
287 |
Q |
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| T |
43189427 |
tggataaccaactaatggtgcctaatagagtggtatatccttgacagggatgccatcatcgcttccgttccaagctatg |
43189505 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 62 - 198
Target Start/End: Original strand, 39852028 - 39852163
Alignment:
| Q |
62 |
ttgttgcttgttggcttggctttatgtgtttagtttctaannnnnnna-atgttatctgcagatactgaaaacaatttgcgtgacaatactcctgaaaca |
160 |
Q |
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||||||||| ||||||||||||||||| ||||||||||| |||||||| ||| |||||||||||||||||||||||||||||||| ||||| |
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| T |
39852028 |
ttgttgcttcttggcttggctttatgt--ttagtttctaattttttttcatgttatcagcatatactgaaaacaatttgcgtgacaatactcctaaaaca |
39852125 |
T |
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| Q |
161 |
tttgatcaacggtgagttgtttattcattatttgtaaa |
198 |
Q |
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| T |
39852126 |
tttgatcaacggtgagttgtttattcattatttgtaaa |
39852163 |
T |
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