View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3231_low_7 (Length: 656)
Name: NF3231_low_7
Description: NF3231
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3231_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 600; Significance: 0; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 600; E-Value: 0
Query Start/End: Original strand, 15 - 641
Target Start/End: Complemental strand, 5391702 - 5391073
Alignment:
| Q |
15 |
atcaaaaagacgttgaattgaagctctctcccttaactgatgtgacacatattttctatgtctcgtggaccagcatgcccacagaggctcaaaactgcga |
114 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
5391702 |
atcaaaaagacgttgaattgaagctctctcccttaactgatgtgacacatattttctatgtctcgtggaccagcatgcccacagaggctcaaaactgcaa |
5391603 |
T |
|
| Q |
115 |
agttaacggttcaatgttaaggaacgtccttcgagccctcatcccaaatactctgaatctttgtcatgtatcccttcagacgggaatcaagcactacttt |
214 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||| |
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| T |
5391602 |
agttaacggttcaatgttaaggaacgtccttcgagccctcatcccaaatactctgaatctttgtcatgtgtcccttcaaacgggaatcaagcactacttt |
5391503 |
T |
|
| Q |
215 |
ggatcctttgaaatagtcggtaagatcaagccccatgagtcccctttcacggaggatgtgccacgccttgtcacacccaatttctatcacacacaagagg |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5391502 |
ggatcctttgaaatagtcggtaagatcaagccccatgagtcccctttcacggaggatgtgccacgccttgtcacacccaatttctatcacacacaagagg |
5391403 |
T |
|
| Q |
315 |
atatcttgctagaagaggttggtaaattaaactaaacaaacaaattattgtcaataaaatacgtcacaacatac---actattatataattagatgaact |
411 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
5391402 |
atatcttgctagaagaggttggtaaattaaactaaacaaacaaattattgtcaataaaatacgtcacaacatacactactattatataattagatgaact |
5391303 |
T |
|
| Q |
412 |
atatttttattcaggtgggtaagaaaaaaggaatgacatggttcattaatcgaccacaagttatctttggattttcaccttacagcatgatgaacctcat |
511 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5391302 |
atatttttattcaggtgggtaagaaaaaaggaatgacatggttcattaatcgaccacaagttatctttggattttcaccttacagcatgatgaacctcat |
5391203 |
T |
|
| Q |
512 |
tggcacgctttgtgtttacgctgcaatttgcaagcatgagggtcttccattaaggtttcctggctcaaaagctgcatgggaatgttattcaacagcttca |
611 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
5391202 |
tggcacgctttgtgtttacgctgcaatttgcaagcatgagggtcttccattaaggtttcctggctcaaaaggtgcatgggaatgttattcaacagcttca |
5391103 |
T |
|
| Q |
612 |
gatgctaatttaatatccgaacaacatatt |
641 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
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| T |
5391102 |
gatgctaatttaatatccgaacaacatatt |
5391073 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 17 - 337
Target Start/End: Complemental strand, 5395511 - 5395191
Alignment:
| Q |
17 |
caaaaagacgttgaattgaagctctctcccttaactgatgtgacacatattttctatgtctcgtggaccagcatgcccacagaggctcaaaactgcgaag |
116 |
Q |
| |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
5395511 |
caaaaagacgtcgaattgaagctctctcccttaactgatgtgacacatattttctatgtctcgtggaccagcatgcctacagaggctcaaaactgcgaag |
5395412 |
T |
|
| Q |
117 |
ttaacggttcaatgttaaggaacgtccttcgagccctcatcccaaatactctgaatctttgtcatgtatcccttcagacgggaatcaagcactactttgg |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| |||||||| || |||| ||||||||| | || |
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| T |
5395411 |
ttaacggttcaatgttaaggaacgtccttcgagccctcatcccaaatactctcaatctttgccatgtgtcccttcaaacaggaactaagcactacctagg |
5395312 |
T |
|
| Q |
217 |
atcctttgaaatagtcggtaagatcaagccccatgagtcccctttcacggaggatgtgccacgccttgtcacacccaatttctatcacacacaagaggat |
316 |
Q |
| |
|
|||||| |||| |||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||| |||||| |
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| T |
5395311 |
atccttcgaaacgatcggtaagatcaaggcccatgagtcccccttcacggaggatgtgccacgccttgtcacacccaatttctattacacacaggaggat |
5395212 |
T |
|
| Q |
317 |
atcttgctagaagaggttggt |
337 |
Q |
| |
|
|||||| |||||||||||||| |
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|
| T |
5395211 |
atcttgttagaagaggttggt |
5395191 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 218; E-Value: 1e-119
Query Start/End: Original strand, 416 - 641
Target Start/End: Complemental strand, 5400017 - 5399792
Alignment:
| Q |
416 |
ttttattcaggtgggtaagaaaaaaggaatgacatggttcattaatcgaccacaagttatctttggattttcaccttacagcatgatgaacctcattggc |
515 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5400017 |
ttttattcaggtgggtaagaaaaaaggaacgacatggttcattaatcgaccacaagttatctttggattttcaccttacagcatgatgaacctcattggc |
5399918 |
T |
|
| Q |
516 |
acgctttgtgtttacgctgcaatttgcaagcatgagggtcttccattaaggtttcctggctcaaaagctgcatgggaatgttattcaacagcttcagatg |
615 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
5399917 |
acgctttgtgtttacgctgcaatttgcaagcatgagggtcttccattaaggtttcctggctcaaaaggtgcatgggaatgttattcaacagcttcagatg |
5399818 |
T |
|
| Q |
616 |
ctaatttaatatccgaacaacatatt |
641 |
Q |
| |
|
|||||||||||||||||||||||||| |
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|
| T |
5399817 |
ctaatttaatatccgaacaacatatt |
5399792 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 183; E-Value: 1e-98
Query Start/End: Original strand, 383 - 641
Target Start/End: Complemental strand, 5394869 - 5394611
Alignment:
| Q |
383 |
acatacactattatataattagatgaactatatttttattcaggtgggtaagaaaaaaggaatgacatggttcattaatcgaccacaagttatctttgga |
482 |
Q |
| |
|
||||||| ||||||||||||| |||||| |||| ||| |||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||| |
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| T |
5394869 |
acatacattattatataattaaatgaacaatatatttgttcaggtgggtaagaaaaaaggaacgacatggttcattaatcgaccacaccccatctttgga |
5394770 |
T |
|
| Q |
483 |
ttttcaccttacagcatgatgaacctcattggcacgctttgtgtttacgctgcaatttgcaagcatgagggtcttccattaaggtttcctggctcaaaag |
582 |
Q |
| |
|
||||||||||| |||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
5394769 |
ttttcaccttatagcatgatgaacgtcattggcacgctttgtgtttacgccgcaatttgcaagcatgagggtcttcctttaaggtttcctggctcaaaag |
5394670 |
T |
|
| Q |
583 |
ctgcatgggaatgttattcaacagcttcagatgctaatttaatatccgaacaacatatt |
641 |
Q |
| |
|
||||||||| |||||||| || ||||||||||||||||||||| |||||||||||||| |
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|
| T |
5394669 |
gtgcatgggagtgttattctactgcttcagatgctaatttaatagccgaacaacatatt |
5394611 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 15 - 334
Target Start/End: Complemental strand, 5401660 - 5401341
Alignment:
| Q |
15 |
atcaaaaagacgttgaattgaagctctctcccttaactgatgtgacacatattttctatgtctcgtggaccagcatgcccacagaggctcaaaactgcga |
114 |
Q |
| |
|
||||||| || |||||||||||||| || || ||||| || ||||| ||||| |||||||||||||||||||||| ||||| ||||||||||| || || |
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| T |
5401660 |
atcaaaacgatgttgaattgaagctatcccctttaacagacgtgacccatatattctatgtctcgtggaccagcagacccacggaggctcaaaattgtga |
5401561 |
T |
|
| Q |
115 |
agttaacggttcaatgttaaggaacgtccttcgagccctcatcccaaatactctgaatctttgtcatgtatcccttcagacgggaatcaagcactacttt |
214 |
Q |
| |
|
|| || ||| | ||||| ||||||||||||| |||||| ||||||||| ||| ||||||| ||||| || |||||||| || ||||||||| | |
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|
| T |
5401560 |
ggtgaatggtgccatgttgaggaacgtccttcaagccctaatcccaaatgctccaaatctttcccatgtgtctcttcagactggtgccaagcactatgta |
5401461 |
T |
|
| Q |
215 |
ggatcctttgaaatagtcggtaagatcaagccccatgagtcccctttcacggaggatgtgccacgccttgtcacacccaatttctatcacacacaagagg |
314 |
Q |
| |
|
||| |||| ||||| ||||||||||||| || ||||||||||| ||||| ||||||||||||||||| | |||||||||||||||| ||||| ||||| |
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| T |
5401460 |
ggacccttcgaaatcatcggtaagatcaaacctcatgagtcccccttcacagaggatgtgccacgcctcgacacacccaatttctattacacattagagg |
5401361 |
T |
|
| Q |
315 |
atatcttgctagaagaggtt |
334 |
Q |
| |
|
|||||||| | ||||||||| |
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|
| T |
5401360 |
atatcttgttcgaagaggtt |
5401341 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 54; Significance: 1e-21; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 474 - 559
Target Start/End: Complemental strand, 3819103 - 3819018
Alignment:
| Q |
474 |
atctttggattttcaccttacagcatgatgaacctcattggcacgctttgtgtttacgctgcaatttgcaagcatgagggtcttcc |
559 |
Q |
| |
|
||||||||||||||||||||||| |||||||| ||||||| || |||||||||||||||||||||| |||||||||||| |||| |
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|
| T |
3819103 |
atctttggattttcaccttacagtatgatgaatatcattggaactatttgtgtttacgctgcaatttgtaagcatgagggtgttcc |
3819018 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 474 - 559
Target Start/End: Original strand, 47338774 - 47338859
Alignment:
| Q |
474 |
atctttggattttcaccttacagcatgatgaacctcattggcacgctttgtgtttacgctgcaatttgcaagcatgagggtcttcc |
559 |
Q |
| |
|
||||||||||||||||||||||| |||||||| ||||||| || |||||||||||||||||||||| |||||||||||| |||| |
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| T |
47338774 |
atctttggattttcaccttacagtatgatgaatatcattggaactatttgtgtttacgctgcaatttgtaagcatgagggtgttcc |
47338859 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 463 - 547
Target Start/End: Original strand, 47347233 - 47347317
Alignment:
| Q |
463 |
gaccacaagttatctttggattttcaccttacagcatgatgaacctcattggcacgctttgtgtttacgctgcaatttgcaagca |
547 |
Q |
| |
|
|||| |||||||| ||||||||||||||||| || ||||||| ||| |||| || ||||||||||| ||||||||||||||||| |
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|
| T |
47347233 |
gacctcaagttatatttggattttcaccttatagtttgatgaatctcgttggtacactttgtgtttatgctgcaatttgcaagca |
47347317 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 474 - 550
Target Start/End: Original strand, 47349783 - 47349859
Alignment:
| Q |
474 |
atctttggattttcaccttacagcatgatgaacctcattggcacgctttgtgtttacgctgcaatttgcaagcatga |
550 |
Q |
| |
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||||||||||| ||||||||||| ||||||| | ||||||||||||| ||||||||||||||||||||||||| |
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| T |
47349783 |
atctttggattctcaccttacagtttgatgaatgttgttggcacgctttgcctttacgctgcaatttgcaagcatga |
47349859 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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