View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3231_low_72 (Length: 288)

Name: NF3231_low_72
Description: NF3231
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3231_low_72
NF3231_low_72
[»] chr8 (22 HSPs)
chr8 (1-288)||(4874673-4874959)
chr8 (91-204)||(4737280-4737393)
chr8 (89-205)||(4900569-4900685)
chr8 (91-164)||(4746059-4746132)
chr8 (89-205)||(4912973-4913089)
chr8 (89-205)||(10447867-10447983)
chr8 (91-202)||(4776040-4776151)
chr8 (91-205)||(4716052-4716166)
chr8 (91-205)||(4889512-4889626)
chr8 (91-199)||(4996930-4997038)
chr8 (89-164)||(21438959-21439034)
chr8 (91-283)||(4704016-4704206)
chr8 (93-164)||(4923665-4923736)
chr8 (89-270)||(4689505-4689686)
chr8 (91-164)||(4681929-4682002)
chr8 (92-205)||(4726725-4726838)
chr8 (12-65)||(4726651-4726704)
chr8 (224-283)||(4682059-4682119)
chr8 (3-67)||(4776174-4776237)
chr8 (12-71)||(4737204-4737263)
chr8 (224-270)||(4775972-4776018)
chr8 (12-65)||(4745986-4746039)


Alignment Details
Target: chr8 (Bit Score: 228; Significance: 1e-126; HSPs: 22)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 288
Target Start/End: Complemental strand, 4874959 - 4874673
Alignment:
Q  1 tatgatttttcagtgccatctgtggtataaagtaaactatatgcaaattggcttgaaatccttttgaactgnnnnnnnnnnnnnaatgccaaatactagt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||             ||||||||||||||||    
T  4874959 tatgatttttcagtgccatctgtggtataaagtaaactatatgcaaattggcttgaaatccttttgaactgtttttttttttt-aatgccaaatactagt 4874861  T
Q  101 tgatgcaatcacaaacatcaagaatgcttatggggtggaaagaaattggcaaggagatccatgttaccctgaagcatacatgtgggaaggcctaaactgt 200  Q
    |||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4874860 tgatactatcacaaacatcaagaatgcttatggggtggaaagaaattggcaaggagatccatgttaccctgaagcatacatgtgggaaggcctaaactgt 4874761  T
Q  201 agtatgcattatattattggcggcccaagaatcctatctttgtaagtttacaatccctgaaataaaccatttcataaattcaacaacc 288  Q
    |||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4874760 agtatgcattatctgattggcggcccaagaatcctatctttgtaagtttacaatccctgaaataaaccatttcataaattcaacaacc 4874673  T

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Target: chr8; HSP #2
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 91 - 204
Target Start/End: Original strand, 4737280 - 4737393
Alignment:
Q  91 aaatactagttgatgcaatcacaaacatcaagaatgcttatggggtggaaagaaattggcaaggagatccatgttaccctgaagcatacatgtgggaagg 190  Q
    |||||| ||||||| | || ||||||||||||||||||||||| |||| |||||||||||||||||||||||||  |||||     ||||||||||||||    
T  4737280 aaataccagttgatactatgacaaacatcaagaatgcttatggtgtggcaagaaattggcaaggagatccatgtgcccctgtgaattacatgtgggaagg 4737379  T
Q  191 cctaaactgtagta 204  Q
    ||||||||||||||    
T  4737380 cctaaactgtagta 4737393  T

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Target: chr8; HSP #3
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 89 - 205
Target Start/End: Complemental strand, 4900685 - 4900569
Alignment:
Q  89 ccaaatactagttgatgcaatcacaaacatcaagaatgcttatggggtggaaagaaattggcaaggagatccatgttaccctgaagcatacatgtgggaa 188  Q
    |||||| ||||||||| | ||||||||||||||| |||||||||||||||  ||||||||||||||||||||||||   ||||    ||| |||||||||    
T  4900685 ccaaatgctagttgatactatcacaaacatcaaggatgcttatggggtggctagaaattggcaaggagatccatgtggtcctgtgaaatatatgtgggaa 4900586  T
Q  189 ggcctaaactgtagtat 205  Q
    | |||||||||||||||    
T  4900585 gtcctaaactgtagtat 4900569  T

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Target: chr8; HSP #4
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 91 - 164
Target Start/End: Original strand, 4746059 - 4746132
Alignment:
Q  91 aaatactagttgatgcaatcacaaacatcaagaatgcttatggggtggaaagaaattggcaaggagatccatgt 164  Q
    |||||||||||||| | ||||||||||||||||||||||||||||| |  ||||||||||||||||||||||||    
T  4746059 aaatactagttgatactatcacaaacatcaagaatgcttatggggttgcgagaaattggcaaggagatccatgt 4746132  T

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Target: chr8; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 89 - 205
Target Start/End: Complemental strand, 4913089 - 4912973
Alignment:
Q  89 ccaaatactagttgatgcaatcacaaacatcaagaatgcttatggggtggaaagaaattggcaaggagatccatgttaccctgaagcatacatgtgggaa 188  Q
    ||||||| ||||| |||| ||||||||||||||| ||||||||| |||||  ||||||||||||||||||||||||   ||||     || |||||||||    
T  4913089 ccaaataatagttaatgctatcacaaacatcaaggatgcttatgtggtggctagaaattggcaaggagatccatgtggtcctgtgaattatatgtgggaa 4912990  T
Q  189 ggcctaaactgtagtat 205  Q
    |||||||||||||||||    
T  4912989 ggcctaaactgtagtat 4912973  T

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Target: chr8; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 89 - 205
Target Start/End: Original strand, 10447867 - 10447983
Alignment:
Q  89 ccaaatactagttgatgcaatcacaaacatcaagaatgcttatggggtggaaagaaattggcaaggagatccatgt--taccctgaagcatacatgtggg 186  Q
    |||||||||||||||| | ||||||||||||||||||||||||||| |||  ||||||||| | ||||||||||||  | |  |||||  || |||||||    
T  10447867 ccaaatactagttgatactatcacaaacatcaagaatgcttatgggatggctagaaattggaatggagatccatgtggtccagtgaag--tatatgtggg 10447964  T
Q  187 aaggcctaaactgtagtat 205  Q
    |||||||||||||||||||    
T  10447965 aaggcctaaactgtagtat 10447983  T

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Target: chr8; HSP #7
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 91 - 202
Target Start/End: Complemental strand, 4776151 - 4776040
Alignment:
Q  91 aaatactagttgatgcaatcacaaacatcaagaatgcttatggggtggaaagaaattggcaaggagatccatgttaccctgaagcatacatgtgggaagg 190  Q
    ||||||||||||||   |||||||||||||||||||||||||| |||   ||||||||||||||||||||||||  |||||     || |||||||||||    
T  4776151 aaatactagttgataatatcacaaacatcaagaatgcttatggagtgactagaaattggcaaggagatccatgtgcccctgtgaattatatgtgggaagg 4776052  T
Q  191 cctaaactgtag 202  Q
    ||||||||||||    
T  4776051 cctaaactgtag 4776040  T

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Target: chr8; HSP #8
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 91 - 205
Target Start/End: Original strand, 4716052 - 4716166
Alignment:
Q  91 aaatactagttgatgcaatcacaaacatcaagaatgcttatggggtggaaagaaattggcaaggagatccatgttaccctgaagcatacatgtgggaagg 190  Q
    |||||||||||||| | |||||||||||||||||| |||||||||||   ||||||||||||||||||||||||   ||||     || |||||||||||    
T  4716052 aaatactagttgatactatcacaaacatcaagaatacttatggggtgactagaaattggcaaggagatccatgtggtcctgtgaattatatgtgggaagg 4716151  T
Q  191 cctaaactgtagtat 205  Q
    |||||| ||||||||    
T  4716152 cctaaattgtagtat 4716166  T

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Target: chr8; HSP #9
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 91 - 205
Target Start/End: Complemental strand, 4889626 - 4889512
Alignment:
Q  91 aaatactagttgatgcaatcacaaacatcaagaatgcttatggggtggaaagaaattggcaaggagatccatgttaccctgaagcatacatgtgggaagg 190  Q
    |||||||||||||| | ||||||||||||||||||||||||||| ||   ||||||||| ||||||||||||||  |||||     ||| ||||||||||    
T  4889626 aaatactagttgatactatcacaaacatcaagaatgcttatgggctgactagaaattgggaaggagatccatgtgcccctgtgaattacgtgtgggaagg 4889527  T
Q  191 cctaaactgtagtat 205  Q
    ||||||||| |||||    
T  4889526 cctaaactgcagtat 4889512  T

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Target: chr8; HSP #10
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 91 - 199
Target Start/End: Original strand, 4996930 - 4997038
Alignment:
Q  91 aaatactagttgatgcaatcacaaacatcaagaatgcttatggggtggaaagaaattggcaaggagatccatgttaccctgaagcatacatgtgggaagg 190  Q
    |||||||||||||| | |||| ||||||||||||  ||||||||||||  ||||||||||||||||||||||||  |||||     || |||||||||||    
T  4996930 aaatactagttgatactatcataaacatcaagaacacttatggggtggctagaaattggcaaggagatccatgtgcccctgtgaattatatgtgggaagg 4997029  T
Q  191 cctaaactg 199  Q
    |||||||||    
T  4997030 cctaaactg 4997038  T

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Target: chr8; HSP #11
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 89 - 164
Target Start/End: Complemental strand, 21439034 - 21438959
Alignment:
Q  89 ccaaatactagttgatgcaatcacaaacatcaagaatgcttatggggtggaaagaaattggcaaggagatccatgt 164  Q
    |||||||||||||||||| ||||||||| ||||| ||||||||  |||||  ||||||||||||||||||||||||    
T  21439034 ccaaatactagttgatgctatcacaaacgtcaaggatgcttataaggtggctagaaattggcaaggagatccatgt 21438959  T

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Target: chr8; HSP #12
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 91 - 283
Target Start/End: Original strand, 4704016 - 4704206
Alignment:
Q  91 aaatactagttgatgcaatcacaaacatcaagaatgcttatggggtggaaagaaattggcaaggagatccatgttaccctgaagcatacatgtgggaagg 190  Q
    |||||||||||||| | ||||  || ||||||||  |||||||||||   ||||||||||||||||||||||||  |||||     ||||||||||||||    
T  4704016 aaatactagttgatactatcatgaatatcaagaacacttatggggtgtctagaaattggcaaggagatccatgtgtccctgtgaattacatgtgggaagg 4704115  T
Q  191 cctaaactgtagtatgcattatattattggcggcccaagaatcctatctttgtaagtttacaatccctgaaataaaccat-ttcataaattcaa 283  Q
    | ||||||||| |||   | ||   | | ||  ||||||||||  ||||||||||||||||||||||| ||||||| ||| | |||||||||||    
T  4704116 cgtaaactgtactat---tgatgccaatagcatcccaagaatcacatctttgtaagtttacaatcccttaaataaatcatatccataaattcaa 4704206  T

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Target: chr8; HSP #13
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 93 - 164
Target Start/End: Complemental strand, 4923736 - 4923665
Alignment:
Q  93 atactagttgatgcaatcacaaacatcaagaatgcttatggggtggaaagaaattggcaaggagatccatgt 164  Q
    |||||||||||| | |||||||||||||||||  ||||||||||||  | ||||||||||||||||||||||    
T  4923736 atactagttgatactatcacaaacatcaagaagacttatggggtggctaaaaattggcaaggagatccatgt 4923665  T

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Target: chr8; HSP #14
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 89 - 270
Target Start/End: Original strand, 4689505 - 4689686
Alignment:
Q  89 ccaaatactagttgatgcaatcacaaacatcaagaatgcttatggggtggaaagaaattggcaaggagatccatgttaccctgaagcatacatgtgggaa 188  Q
    |||||||||||||||| | || |||||||| ||||| || ||||| ||||  ||||||||||||||||||||||||   ||||     || |||||||||    
T  4689505 ccaaatactagttgatactattacaaacattaagaaggcctatggagtggctagaaattggcaaggagatccatgtggtcctgtgaattatatgtgggaa 4689604  T
Q  189 ggcctaaactgtagtatgcattatattattggcggcccaagaatcctatctttgtaagtttacaatccctgaaataaaccat 270  Q
    |||||||| ||||||||  || ||   | |  |  ||||||||||  |||||||||||||||||||| ||  ||||||||||    
T  4689605 ggcctaaattgtagtattgatgatgccaataaccccccaagaatcacatctttgtaagtttacaatcacttcaataaaccat 4689686  T

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Target: chr8; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 91 - 164
Target Start/End: Original strand, 4681929 - 4682002
Alignment:
Q  91 aaatactagttgatgcaatcacaaacatcaagaatgcttatggggtggaaagaaattggcaaggagatccatgt 164  Q
    |||||||||||||| | || | |||||||||||| || ||||||||||  ||||||||||| ||||||||||||    
T  4681929 aaatactagttgatactatgagaaacatcaagaaggcctatggggtggctagaaattggcagggagatccatgt 4682002  T

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Target: chr8; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 92 - 205
Target Start/End: Original strand, 4726725 - 4726838
Alignment:
Q  92 aatactagttgatgcaatcacaaacatcaagaatgcttatggggtggaaagaaattggcaaggagatccatgt--taccctgaagcatacatgtgggaag 189  Q
    ||||| ||||||| | || |||||||||||||||||||||||||||   || |||||||| ||||||||||||  | || ||||  ||| ||||||||||    
T  4726725 aatacaagttgatactatgacaaacatcaagaatgcttatggggtgactaggaattggcagggagatccatgtggtcccgtgaa--atatatgtgggaag 4726822  T
Q  190 gcctaaactgtagtat 205  Q
    || ||||||| |||||    
T  4726823 gcttaaactgcagtat 4726838  T

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Target: chr8; HSP #17
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 12 - 65
Target Start/End: Original strand, 4726651 - 4726704
Alignment:
Q  12 agtgccatctgtggtataaagtaaactatatgcaaattggcttgaaatcctttt 65  Q
    |||| ||| |||||| |||||||| |||| ||||||||||||||||||||||||    
T  4726651 agtgtcatttgtggtgtaaagtaagctatgtgcaaattggcttgaaatcctttt 4726704  T

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Target: chr8; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 224 - 283
Target Start/End: Original strand, 4682059 - 4682119
Alignment:
Q  224 cccaagaatcctatctttgtaagtttacaatccctgaaataaaccat-ttcataaattcaa 283  Q
    ||||||||||  ||||||||||||||||||||||| ||||||| ||| | |||||||||||    
T  4682059 cccaagaatcacatctttgtaagtttacaatcccttaaataaatcatatgcataaattcaa 4682119  T

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Target: chr8; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 3 - 67
Target Start/End: Complemental strand, 4776237 - 4776174
Alignment:
Q  3 tgatttttcagtgccatctgtggtataaagtaaactatatgcaaattggcttgaaatccttttga 67  Q
    |||||||| ||||  || |||||| ||||||||||||| ||||| ||||||||||||||||||||    
T  4776237 tgattttttagtgttatttgtggtgtaaagtaaactatgtgcaa-ttggcttgaaatccttttga 4776174  T

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Target: chr8; HSP #20
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 12 - 71
Target Start/End: Original strand, 4737204 - 4737263
Alignment:
Q  12 agtgccatctgtggtataaagtaaactatatgcaaattggcttgaaatccttttgaactg 71  Q
    |||||||| |||||| ||| ||||||||| || |||||||||||||||||| || |||||    
T  4737204 agtgccatttgtggtgtaacgtaaactatgtgaaaattggcttgaaatcctgttcaactg 4737263  T

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Target: chr8; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 224 - 270
Target Start/End: Complemental strand, 4776018 - 4775972
Alignment:
Q  224 cccaagaatcctatctttgtaagtttacaatccctgaaataaaccat 270  Q
    ||||||||||  ||||||||||||||||||||||| |||| ||||||    
T  4776018 cccaagaatcacatctttgtaagtttacaatcccttaaattaaccat 4775972  T

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Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 65
Target Start/End: Original strand, 4745986 - 4746039
Alignment:
Q  12 agtgccatctgtggtataaagtaaactatatgcaaattggcttgaaatcctttt 65  Q
    |||| ||| |||||| ||||||||||||| ||||||||| ||| ||||||||||    
T  4745986 agtgtcatttgtggtgtaaagtaaactatgtgcaaattgcctttaaatcctttt 4746039  T

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