View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3231_low_87 (Length: 250)

Name: NF3231_low_87
Description: NF3231
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3231_low_87
NF3231_low_87
[»] chr4 (13 HSPs)
chr4 (8-250)||(42756657-42756901)
chr4 (83-241)||(13909799-13909957)
chr4 (83-241)||(24180591-24180749)
chr4 (83-250)||(11560217-11560383)
chr4 (99-250)||(24182429-24182580)
chr4 (83-246)||(12576835-12576998)
chr4 (113-250)||(35648520-35648657)
chr4 (113-164)||(22681162-22681213)
chr4 (93-151)||(2041166-2041224)
chr4 (90-239)||(28474811-28474961)
chr4 (91-137)||(50159145-50159191)
chr4 (97-166)||(13239976-13240045)
chr4 (90-162)||(285179-285251)
[»] scaffold1315 (1 HSPs)
scaffold1315 (14-234)||(1275-1497)
[»] scaffold1293 (1 HSPs)
scaffold1293 (14-234)||(574-796)
[»] chr2 (13 HSPs)
chr2 (21-248)||(6466919-6467148)
chr2 (83-241)||(45661111-45661269)
chr2 (8-82)||(20442863-20442937)
chr2 (83-241)||(5788011-5788169)
chr2 (83-241)||(45662556-45662713)
chr2 (99-250)||(14872722-14872873)
chr2 (83-250)||(45053988-45054155)
chr2 (95-164)||(41752905-41752974)
chr2 (118-249)||(36720074-36720205)
chr2 (199-245)||(25546950-25546996)
chr2 (115-241)||(41753953-41754079)
chr2 (113-150)||(39403381-39403418)
chr2 (100-239)||(45058390-45058530)
[»] chr8 (16 HSPs)
chr8 (83-241)||(43215467-43215625)
chr8 (99-250)||(18431492-18431643)
chr8 (98-241)||(45528202-45528345)
chr8 (83-241)||(15275927-15276084)
chr8 (83-241)||(15456296-15456453)
chr8 (113-250)||(15276763-15276900)
chr8 (113-250)||(15457132-15457269)
chr8 (115-185)||(38291836-38291906)
chr8 (113-186)||(19263301-19263374)
chr8 (95-164)||(23140535-23140604)
chr8 (90-143)||(38291332-38291385)
chr8 (120-250)||(760675-760805)
chr8 (95-163)||(13758981-13759049)
chr8 (199-250)||(14715285-14715336)
chr8 (113-171)||(20874610-20874668)
chr8 (83-188)||(42797046-42797151)
[»] scaffold0169 (1 HSPs)
scaffold0169 (90-250)||(5120-5279)
[»] chr3 (10 HSPs)
chr3 (99-250)||(12125429-12125580)
chr3 (83-229)||(9265297-9265443)
chr3 (83-241)||(9266725-9266882)
chr3 (99-250)||(6436845-6436996)
chr3 (99-241)||(9262779-9262921)
chr3 (113-186)||(50419-50492)
chr3 (113-250)||(20934184-20934321)
chr3 (91-150)||(14240497-14240556)
chr3 (98-239)||(6087136-6087277)
chr3 (194-250)||(431975-432031)
[»] chr6 (9 HSPs)
chr6 (8-82)||(24360851-24360925)
chr6 (108-250)||(11554328-11554470)
chr6 (108-250)||(4852808-4852950)
chr6 (116-186)||(2970421-2970491)
chr6 (115-191)||(18089937-18090013)
chr6 (90-241)||(34515068-34515220)
chr6 (119-185)||(26595896-26595962)
chr6 (118-250)||(24397916-24398047)
chr6 (82-186)||(29214195-29214299)
[»] scaffold0159 (1 HSPs)
scaffold0159 (83-241)||(32384-32542)
[»] chr7 (10 HSPs)
chr7 (98-250)||(17474599-17474751)
chr7 (98-250)||(17578463-17578615)
chr7 (91-228)||(6202346-6202483)
chr7 (98-250)||(17510083-17510235)
chr7 (98-250)||(17542979-17543131)
chr7 (92-241)||(38788064-38788213)
chr7 (83-152)||(48553243-48553312)
chr7 (95-242)||(24708450-24708597)
chr7 (121-164)||(27938832-27938875)
chr7 (175-249)||(42078967-42079043)
[»] scaffold0061 (1 HSPs)
scaffold0061 (98-193)||(45583-45678)
[»] scaffold0017 (1 HSPs)
scaffold0017 (98-193)||(153109-153204)
[»] chr1 (4 HSPs)
chr1 (97-250)||(31089469-31089623)
chr1 (99-250)||(16852891-16853042)
chr1 (123-171)||(11976911-11976959)
chr1 (113-250)||(43387042-43387179)
[»] scaffold0191 (1 HSPs)
scaffold0191 (83-188)||(12247-12352)
[»] scaffold0050 (1 HSPs)
scaffold0050 (92-188)||(10561-10657)
[»] scaffold1312 (1 HSPs)
scaffold1312 (113-239)||(2-128)
[»] scaffold0024 (1 HSPs)
scaffold0024 (90-150)||(46261-46321)
[»] scaffold0284 (1 HSPs)
scaffold0284 (116-214)||(7539-7637)
[»] chr5 (3 HSPs)
chr5 (113-151)||(9048715-9048753)
chr5 (124-221)||(38012839-38012936)
chr5 (113-250)||(38015875-38016012)
[»] scaffold1743 (1 HSPs)
scaffold1743 (113-186)||(185-258)
[»] scaffold0074 (1 HSPs)
scaffold0074 (118-250)||(30839-30970)
[»] scaffold0012 (1 HSPs)
scaffold0012 (199-250)||(95951-96002)
[»] scaffold1804 (1 HSPs)
scaffold1804 (127-165)||(1034-1072)
[»] scaffold0211 (1 HSPs)
scaffold0211 (98-135)||(16017-16054)


Alignment Details
Target: chr4 (Bit Score: 198; Significance: 1e-108; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 8 - 250
Target Start/End: Original strand, 42756657 - 42756901
Alignment:
Q  8 aagcataggacaaccaaaaactaagacaacaatttatcataatgattggagctccgagggagcctgtaatgactt--atcattgcatttggctaagagaa 105  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||  ||||||||| ||||||    
T  42756657 aagcaaaggacaaccaaaaactaagacaacaatttatcataatgattggagctccgagggagcctgtaatgacttgaatcatcacatttggcttagagaa 42756756  T
Q  106 atcccataagtgagattgacaccacatcttcatccaaaaccttaagactctaggtatatttgtcatttaacttatatgttgctgaatttatagtcttgca 205  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||| ||||||||||||    
T  42756757 accccataagtgagattgacaccacatcttcatccaaaaccttaagactttaggtatatttgtcatttaacttatatgttgctcaatatatagtcttgca 42756856  T
Q  206 tccaatgtagaagttttactcacaaatgacacattaccatctctc 250  Q
    |||||||||||||||||||||||||||||||||||| ||||||||    
T  42756857 tccaatgtagaagttttactcacaaatgacacattaacatctctc 42756901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 83 - 241
Target Start/End: Complemental strand, 13909957 - 13909799
Alignment:
Q  83 atcattgcatttggctaagagaaatcccataagtgagattgacaccacatcttcatccaaaaccttaagactctaggtatatttgtcatttaacttatat 182  Q
    |||||| |||||| |||||||||| |||| || ||||||||||||||||||||||| ||||| ||||||||   ||||||||| | ||| | ||||||||    
T  13909957 atcattacatttgtctaagagaaaccccacaaatgagattgacaccacatcttcattcaaaatcttaagacatcaggtatattggacatctcacttatat 13909858  T
Q  183 gttgctgaatttatagtcttgcatccaatgtagaagttttactcacaaatgacacatta 241  Q
    |||||| ||| | || | |||| || |||||| ||| || ||||||| ||| |||||||    
T  13909857 gttgctcaatatttatttttgcgtcaaatgtaaaaggttaactcacacatgtcacatta 13909799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 83 - 241
Target Start/End: Original strand, 24180591 - 24180749
Alignment:
Q  83 atcattgcatttggctaagagaaatcccataagtgagattgacaccacatcttcatccaaaaccttaagactctaggtatatttgtcatttaacttatat 182  Q
    |||||| |||||  |||||||||| |||| || |||| ||||||| |||| ||||| |||||||||||||   |||||||||| | ||||| | ||||||    
T  24180591 atcattacatttatctaagagaaaccccaaaaatgagtttgacactacattttcattcaaaaccttaagatattaggtatattggacatttcagttatat 24180690  T
Q  183 gttgctgaatttatagtcttgcatccaatgtagaagttttactcacaaatgacacatta 241  Q
    |||||| ||| | || ||||||||| |||||| ||| || ||||||| ||| |||||||    
T  24180691 gttgcttaatatttactcttgcatcaaatgtaaaaggttaactcacacatgtcacatta 24180749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 83 - 250
Target Start/End: Complemental strand, 11560383 - 11560217
Alignment:
Q  83 atcattgcatttggctaagagaaatcccataagtgagattgacaccacatcttcatccaaaaccttaagactctaggtatatttgtcatttaacttatat 182  Q
    ||||| ||||||| ||||||||||| | | || ||  ||||| || |||||||||   |||||||||||||   | ||||||||||||| | || |||||    
T  11560383 atcatcgcatttgactaagagaaattctagaattggtattgaaactacatcttcacttaaaaccttaagacatcaagtatatttgtcatctcacgtatat 11560284  T
Q  183 gttgctgaatttatagtcttgcatccaatgtagaagttttactcacaaatgacacattaccatctctc 250  Q
     ||| | ||| |||| |||||||||||||||| |||||| ||||||  ||||||||||| ||||||||    
T  11560283 attg-tcaatatatactcttgcatccaatgtataagtttaactcacccatgacacattaacatctctc 11560217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 99 - 250
Target Start/End: Original strand, 24182429 - 24182580
Alignment:
Q  99 aagagaaatcccataagtgagattgacaccacatcttcatccaaaaccttaagactctaggtatatttgtcatttaacttatatgttgctgaatttatag 198  Q
    ||||||||||| | ||||||||||||||||||||||||| |  ||||||||| ||  || ||||||| ||||| | || |  ||||| || ||| ||||     
T  24182429 aagagaaatccgacaagtgagattgacaccacatcttcacctgaaaccttaatacattatgtatattagtcatctcacattcatgtttctcaatatatac 24182528  T
Q  199 tcttgcatccaatgtagaagttttactcacaaatgacacattaccatctctc 250  Q
    | |||| | |||||||||||||| ||| ||| ||||||||||| ||| ||||    
T  24182529 ttttgctttcaatgtagaagtttaacttacacatgacacattaacatatctc 24182580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 83 - 246
Target Start/End: Original strand, 12576835 - 12576998
Alignment:
Q  83 atcattgcatttggctaagagaaatcccataagtgagattgacaccacatcttcatccaaaaccttaagactctaggtatatttgtcatttaacttatat 182  Q
    |||||| ||||||||||||||||  |||| || ||||||||| |||| || || | ||||||| |||||||  |||||||||  ||||| | ||| ||||    
T  12576835 atcattacatttggctaagagaatccccacaaatgagattgagaccatattttgacccaaaactttaagacaataggtatatgggtcatctcactaatat 12576934  T
Q  183 gttgctgaatttatagtcttgcatccaatgtagaagttttactcacaaatgacacattaccatc 246  Q
    |||| | ||| |  | |||||||||||| ||| |||||| |||| |  ||||||||||| ||||    
T  12576935 gttgtttaatatccactcttgcatccaacgtaaaagtttaactcccctatgacacattatcatc 12576998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 113 - 250
Target Start/End: Original strand, 35648520 - 35648657
Alignment:
Q  113 aagtgagattgacaccacatcttcatccaaaaccttaagactctaggtatatttgtcatttaacttatatgttgctgaatttatagtcttgcatccaatg 212  Q
    ||||||||||||||||||||||| |   |||| |||||| |  ||||||||||  || | |  ||||||||||||| ||| |||| | |||| | |||||    
T  35648520 aagtgagattgacaccacatctttacgtaaaatcttaaggcattaggtatattgttcttctcgcttatatgttgctcaatatatactattgcttacaatg 35648619  T
Q  213 tagaagttttactcacaaatgacacattaccatctctc 250  Q
    ||||||||| ||||||| |||| |||| | ||||||||    
T  35648620 tagaagtttaactcacacatgaaacataaacatctctc 35648657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 113 - 164
Target Start/End: Original strand, 22681162 - 22681213
Alignment:
Q  113 aagtgagattgacaccacatcttcatccaaaaccttaagactctaggtatat 164  Q
    |||||||||||||||||||||| || || ||||||||||||  |||||||||    
T  22681162 aagtgagattgacaccacatctccaccctaaaccttaagacattaggtatat 22681213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 93 - 151
Target Start/End: Complemental strand, 2041224 - 2041166
Alignment:
Q  93 ttggctaagagaaatcccataagtgagattgacaccacatcttcatccaaaaccttaag 151  Q
    ||||||||||| || | || ||||||| | ||||||||||||||| |||||||||||||    
T  2041224 ttggctaagagcaaccacacaagtgagttggacaccacatcttcacccaaaaccttaag 2041166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 90 - 239
Target Start/End: Original strand, 28474811 - 28474961
Alignment:
Q  90 catttggctaagagaaatcccataagtgagattgacaccacatcttcatccaaaacct-taagactctaggtatatttgtcatttaacttatatgttgct 188  Q
    |||||| | |||||||| |||| || ||||||||||||||||||||||  ||||||||  |||||  || ||||||| | ||| | || |  ||||  ||    
T  28474811 catttgaccaagagaaaccccaaaaatgagattgacaccacatcttcactcaaaacctgaaagacattatgtatattagccatctcacattcatgtatct 28474910  T
Q  189 gaatttatagtcttgcatccaatgtagaagttttactcacaaatgacacat 239  Q
     ||| |||| | |||| | |||||||||||||| ||||||| |||||||||    
T  28474911 caatatatacttttgctttcaatgtagaagtttaactcacacatgacacat 28474961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 91 - 137
Target Start/End: Complemental strand, 50159191 - 50159145
Alignment:
Q  91 atttggctaagagaaatcccataagtgagattgacaccacatcttca 137  Q
    ||||| |||||||||| | ||||||| ||||||||||||||||||||    
T  50159191 atttgactaagagaaacctcataagtaagattgacaccacatcttca 50159145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 97 - 166
Target Start/End: Original strand, 13239976 - 13240045
Alignment:
Q  97 ctaagagaaatcccataagtgagattgacaccacatcttcatccaaaaccttaagactctaggtatattt 166  Q
    |||||||||| || | |||||||||||| | |||||||||  | |||| ||||||||| |||||||||||    
T  13239976 ctaagagaaaccctacaagtgagattgagatcacatcttcgcctaaaatcttaagactttaggtatattt 13240045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 90 - 162
Target Start/End: Complemental strand, 285251 - 285179
Alignment:
Q  90 catttggctaagagaaatcccataagtgagattgacaccacatcttcatccaaaaccttaagactctaggtat 162  Q
    ||||||||||||||||| | || || |||||| ||| ||| || || |||||||||||||||||  |||||||    
T  285251 catttggctaagagaaacctcacaaatgagatcgacgccatattttgatccaaaaccttaagacattaggtat 285179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1315 (Bit Score: 156; Significance: 5e-83; HSPs: 1)
Name: scaffold1315
Description:

Target: scaffold1315; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 14 - 234
Target Start/End: Complemental strand, 1497 - 1275
Alignment:
Q  14 aggacaaccaaaaactaagacaacaatttatcataatgattggagctccgagggagcctgtaatgactt--atcattgcatttggctaagagaaatccca 111  Q
    |||||||||||||| |||||||| ||||||||||||||||| |||||| ||||||| || |||||||||  |||||  ||||||||||||||||| ||||    
T  1497 aggacaaccaaaaattaagacaataatttatcataatgattagagctctgagggagtctataatgacttgaatcatcacatttggctaagagaaacccca 1398  T
Q  112 taagtgagattgacaccacatcttcatccaaaaccttaagactctaggtatatttgtcatttaacttatatgttgctgaatttatagtcttgcatccaat 211  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||  ||| ||||||||||||||||||    
T  1397 taagtgagattgacaccacatcttcatccaaaaccttaagactttagatatatttgtcatttaacttatatgttgcacaatatatagtcttgcatccaat 1298  T
Q  212 gtagaagttttactcacaaatga 234  Q
    |||||||||||||||||||||||    
T  1297 gtagaagttttactcacaaatga 1275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1293 (Bit Score: 156; Significance: 5e-83; HSPs: 1)
Name: scaffold1293
Description:

Target: scaffold1293; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 14 - 234
Target Start/End: Original strand, 574 - 796
Alignment:
Q  14 aggacaaccaaaaactaagacaacaatttatcataatgattggagctccgagggagcctgtaatgactt--atcattgcatttggctaagagaaatccca 111  Q
    |||||||||||||| |||||||| ||||||||||||||||| |||||| ||||||| || |||||||||  |||||  ||||||||||||||||| ||||    
T  574 aggacaaccaaaaattaagacaataatttatcataatgattagagctctgagggagtctataatgacttgaatcatcacatttggctaagagaaacccca 673  T
Q  112 taagtgagattgacaccacatcttcatccaaaaccttaagactctaggtatatttgtcatttaacttatatgttgctgaatttatagtcttgcatccaat 211  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||  ||| ||||||||||||||||||    
T  674 taagtgagattgacaccacatcttcatccaaaaccttaagactttagatatatttgtcatttaacttatatgttgcacaatatatagtcttgcatccaat 773  T
Q  212 gtagaagttttactcacaaatga 234  Q
    |||||||||||||||||||||||    
T  774 gtagaagttttactcacaaatga 796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 119; Significance: 7e-61; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 21 - 248
Target Start/End: Complemental strand, 6467148 - 6466919
Alignment:
Q  21 ccaaaaactaagacaacaatttatcataatgattggagctccgagggagcctgtaatgactt--atcattgcatttggctaagagaaatcccataagtga 118  Q
    ||||||||||||| ||||||||||||||||  |||||||||||||||| |||||||||||||  |||||   |||||| ||||||||| |  ||||||||    
T  6467148 ccaaaaactaagataacaatttatcataatatttggagctccgagggatcctgtaatgacttggatcatcatatttggataagagaaacctgataagtga 6467049  T
Q  119 gattgacaccacatcttcatccaaaaccttaagactctaggtatatttgtcatttaacttatatgttgctgaatttatagtcttgcatccaatgtagaag 218  Q
    |||||||||||||||| ||||||||| ||||||||  ||| |||||||||||||| | |||||| ||||| ||| |||| ||||| ||||||||||||||    
T  6467048 gattgacaccacatctccatccaaaaacttaagacattagttatatttgtcatttcatttatatcttgctcaatatatactcttggatccaatgtagaag 6466949  T
Q  219 ttttactcacaaatgacacattaccatctc 248  Q
    ||||||||| ||||||||||||| ||||||    
T  6466948 ttttactcataaatgacacattatcatctc 6466919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 83 - 241
Target Start/End: Complemental strand, 45661269 - 45661111
Alignment:
Q  83 atcattgcatttggctaagagaaatcccataagtgagattgacaccacatcttcatccaaaaccttaagactctaggtatatttgtcatttaacttatat 182  Q
    |||||| |||||| |||||||||| ||||||| |||||||||||| |||| ||||| ||||| ||||||||  || ||||||| | ||| | ||||||||    
T  45661269 atcattacatttgtctaagagaaaccccataaatgagattgacactacattttcattcaaaatcttaagacattaagtatattggacatctcacttatat 45661170  T
Q  183 gttgctgaatttatagtcttgcatccaatgtagaagttttactcacaaatgacacatta 241  Q
    |||||| ||| | || ||||||||| |||||| ||| || ||||||| ||| |||||||    
T  45661169 gttgcttaatatttactcttgcatcaaatgtaaaaggttaactcacacatgtcacatta 45661111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 8 - 82
Target Start/End: Complemental strand, 20442937 - 20442863
Alignment:
Q  8 aagcataggacaaccaaaaactaagacaacaatttatcataatgattggagctccgagggagcctgtaatgactt 82  Q
    ||||| ||||||||| |||| |||||||||| ||||||||||||||||||||||  |||||||||||||||||||    
T  20442937 aagcaaaggacaaccgaaaattaagacaacagtttatcataatgattggagctctaagggagcctgtaatgactt 20442863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 83 - 241
Target Start/End: Original strand, 5788011 - 5788169
Alignment:
Q  83 atcattgcatttggctaagagaaatcccataagtgagattgacaccacatcttcatccaaaaccttaagactctaggtatatttgtcatttaacttatat 182  Q
    ||||||||||||| | ||||||||  ||||| || | ||| ||| |||||||  |  ||||||||||||||| |  ||||||||||||| | ||||||||    
T  5788011 atcattgcatttgaccaagagaaactccatacgtaaaattcacatcacatctaaactcaaaaccttaagactttgagtatatttgtcatctcacttatat 5788110  T
Q  183 gttgctgaatttatagtcttgcatccaatgtagaagttttactcacaaatgacacatta 241  Q
    |||||| ||| |||| |||| |||  ||||||||||||| | |||||  ||||||||||    
T  5788111 gttgctcaatatatactcttacatataatgtagaagtttaaatcacacgtgacacatta 5788169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 83 - 241
Target Start/End: Complemental strand, 45662713 - 45662556
Alignment:
Q  83 atcattgcatttggctaagagaaatcccataagtgagattgacaccacatcttcatccaaaaccttaagactctaggtatatttgtcatttaacttatat 182  Q
    |||||| ||||||  ||||||||| |||| || ||||||||||||||||||||||| ||||| ||||||||  || ||||||| | ||| | |||||||     
T  45662713 atcattacatttgtttaagagaaa-cccacaattgagattgacaccacatcttcattcaaaatcttaagacattacgtatattggacatcttacttatac 45662615  T
Q  183 gttgctgaatttatagtcttgcatccaatgtagaagttttactcacaaatgacacatta 241  Q
    |||||| ||| | || |||| |||| |||||| ||| || ||||||| ||| |||||||    
T  45662614 gttgctcaatatttactcttacatcaaatgtaaaaggttaactcacacatgtcacatta 45662556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 99 - 250
Target Start/End: Complemental strand, 14872873 - 14872722
Alignment:
Q  99 aagagaaatcccataagtgagattgacaccacatcttcatccaaaaccttaagactctaggtatatttgtcatttaacttatatgttgctgaatttatag 198  Q
    ||||||||||| | ||||||||||||||||||||||||| | ||  |||||| ||  || ||||||| ||||| | || |  ||||| || ||| ||||     
T  14872873 aagagaaatccgacaagtgagattgacaccacatcttcacctaactccttaatacattatgtatattagtcatctcacattcatgtttctcaatatatac 14872774  T
Q  199 tcttgcatccaatgtagaagttttactcacaaatgacacattaccatctctc 250  Q
    | |||| |||||||||||||||| ||| ||| ||||||||||| ||| ||||    
T  14872773 ttttgcttccaatgtagaagtttaacttacacatgacacattaacatatctc 14872722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 83 - 250
Target Start/End: Original strand, 45053988 - 45054155
Alignment:
Q  83 atcattgcatttggctaagagaaatcccataagtgagattgacaccacatcttcatccaaaaccttaagactctaggtatatttgtcatttaacttatat 182  Q
    |||||| |||||| ||||| |||| |||| || ||||||||||||||||||||||| ||||| ||||||||   |||||||||    || | ||||||||    
T  45053988 atcattacatttgtctaagtgaaaccccacaaatgagattgacaccacatcttcattcaaaatcttaagacatcaggtatattgaatatctcacttatat 45054087  T
Q  183 gttgctgaatttatagtcttgcatccaatgtagaagttttactcacaaatgacacattaccatctctc 250  Q
    |||||| ||| | || | |||| || |||||| ||| || ||||||| ||| ||||||| | ||||||    
T  45054088 gttgctcaatatttacttttgcgtcaaatgtaaaaggttaactcacacatgtcacattaacttctctc 45054155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 95 - 164
Target Start/End: Original strand, 41752905 - 41752974
Alignment:
Q  95 ggctaagagaaatcccataagtgagattgacaccacatcttcatccaaaaccttaagactctaggtatat 164  Q
    ||||||||||| |||||||| ||||||||||||||||| || | |||||||||||||||  |||||||||    
T  41752905 ggctaagagaattcccataaatgagattgacaccacattttgacccaaaaccttaagacattaggtatat 41752974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 118 - 249
Target Start/End: Complemental strand, 36720205 - 36720074
Alignment:
Q  118 agattgacaccacatcttcatccaaaaccttaagactctaggtatatttgtcatttaacttatatgttgctgaatttatagtcttgcatccaatgtagaa 217  Q
    ||||||||| |||||||||| |||||  ||| ||||  |||||||||   |||| | |||||||||||||| ||  |||| | |||||  || |||||||    
T  36720205 agattgacatcacatcttcacccaaagtcttcagacattaggtatatggatcatctcacttatatgttgctcaacatatattattgcacacattgtagaa 36720106  T
Q  218 gttttactcacaaatgacacattaccatctct 249  Q
     ||| |||||||  |||||||||| |||||||    
T  36720105 ttttaactcacacttgacacattaacatctct 36720074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 199 - 245
Target Start/End: Complemental strand, 25546996 - 25546950
Alignment:
Q  199 tcttgcatccaatgtagaagttttactcacaaatgacacattaccat 245  Q
    ||||||||||||||||||| ||| |||||||  ||||||||||||||    
T  25546996 tcttgcatccaatgtagaactttaactcacatttgacacattaccat 25546950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 115 - 241
Target Start/End: Original strand, 41753953 - 41754079
Alignment:
Q  115 gtgagattgacaccacatcttcatccaaaaccttaagactctaggtatatttgtcatttaacttatatgttgctgaatttatagtcttgcatccaatgta 214  Q
    |||| ||| |||||||||||  || ||||||||||||||  | | |||||| ||||| | |||||||||||||| ||| | || |||| |||  ||||||    
T  41753953 gtgaaattcacaccacatctaaattcaaaaccttaagacattggatatattagtcatctcacttatatgttgctcaatatctactcttacatataatgta 41754052  T
Q  215 gaagttttactcacaaatgacacatta 241  Q
     |||||| | | ||| |||||||||||    
T  41754053 taagtttaaatgacacatgacacatta 41754079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 113 - 150
Target Start/End: Original strand, 39403381 - 39403418
Alignment:
Q  113 aagtgagattgacaccacatcttcatccaaaaccttaa 150  Q
    |||||||||||||||||||| |||||||||||| ||||    
T  39403381 aagtgagattgacaccacatgttcatccaaaacattaa 39403418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 100 - 239
Target Start/End: Original strand, 45058390 - 45058530
Alignment:
Q  100 agagaaatcccataagtgagattgacaccacatcttcatccaaaacct-taagactctaggtatatttgtcatttaacttatatgttgctgaatttatag 198  Q
    ||||||| |||| || ||||||||||| ||||||||||  ||||||||  |||||  || ||||||| | ||| | ||||  ||||| || ||| ||||     
T  45058390 agagaaaccccaaaaatgagattgacatcacatcttcactcaaaacctgaaagacattatgtatattggccatctcactttcatgtttctcaatatatac 45058489  T
Q  199 tcttgcatccaatgtagaagttttactcacaaatgacacat 239  Q
    | |||| |||||||||||||||| ||  ||| |||||||||    
T  45058490 ttttgcttccaatgtagaagtttaaccgacacatgacacat 45058530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 55; Significance: 1e-22; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 83 - 241
Target Start/End: Original strand, 43215467 - 43215625
Alignment:
Q  83 atcattgcatttggctaagagaaatcccataagtgagattgacaccacatcttcatccaaaaccttaagactctaggtatatttgtcatttaacttatat 182  Q
    |||||| |||||| ||||||| || ||||||| |||||||||||| |||| ||||| ||||||| ||||||  || ||||||| | ||| | ||||||||    
T  43215467 atcattacatttgtctaagaggaaccccataaatgagattgacactacattttcattcaaaaccgtaagacattaagtatattggacatctcacttatat 43215566  T
Q  183 gttgctgaatttatagtcttgcatccaatgtagaagttttactcacaaatgacacatta 241  Q
    |||||| ||| | || ||||||||| |||||| ||| || ||||||| ||| |||||||    
T  43215567 gttgcttaatatttactcttgcatcaaatgtaaaaggttaactcacacatgtcacatta 43215625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 99 - 250
Target Start/End: Original strand, 18431492 - 18431643
Alignment:
Q  99 aagagaaatcccataagtgagattgacaccacatcttcatccaaaaccttaagactctaggtatatttgtcatttaacttatatgttgctgaatttatag 198  Q
    |||||||| |||| |||| |||| ||||||||||||  |||  |||||| |||||  |||||||||| ||||| | |  ||||||||||| ||| ||||     
T  18431492 aagagaaaccccacaagtaagatggacaccacatctctatctcaaacctgaagacattaggtatattggtcatctcaaatatatgttgctcaatatatac 18431591  T
Q  199 tcttgcatccaatgtagaagttttactcacaaatgacacattaccatctctc 250  Q
    ||||||||| ||  ||||||||| ||||||| ||||||||||| ||||||||    
T  18431592 tcttgcatcaaaattagaagtttaactcacacatgacacattaacatctctc 18431643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 98 - 241
Target Start/End: Complemental strand, 45528345 - 45528202
Alignment:
Q  98 taagagaaatcccataagtgagattgacaccacatcttcatccaaaaccttaagactctaggtatatttgtcatttaacttatatgttgctgaatttata 197  Q
    ||||||||| |||| |||||||||  |||||| ||||||| |||||| ||||||||  |||||||||||||||| | | |||||||||||| ||| ||||    
T  45528345 taagagaaaccccacaagtgagatacacaccaaatcttcacccaaaatcttaagacattaggtatatttgtcatctcatttatatgttgctcaatatata 45528246  T
Q  198 gtcttgcatccaatgtagaagttttactcacaaatgacacatta 241  Q
     || ||||||||| || ||| ||| ||||| | |||| ||||||    
T  45528245 ctcgtgcatccaacgttgaaatttaactcatacatgatacatta 45528202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 83 - 241
Target Start/End: Original strand, 15275927 - 15276084
Alignment:
Q  83 atcattgcatttggctaagagaaatcccataagtgagattgacaccacatcttcatccaaaaccttaagactctaggtatatttgtcatttaacttatat 182  Q
    |||||| |||||| |||||||||| |||| || ||||||||||||||||||||||| | ||||||||||||  |||||||||| | ||| | |||||||     
T  15275927 atcattacatttgtctaagagaaa-cccacaaatgagattgacaccacatcttcattcgaaaccttaagacattaggtatattggacatcttacttatac 15276025  T
Q  183 gttgctgaatttatagtcttgcatccaatgtagaagttttactcacaaatgacacatta 241  Q
    ||||||  || | || |||| |||| |||||| ||| || ||||||| ||| |||||||    
T  15276026 gttgctcgatatttactcttacatcaaatgtaaaaggttaactcacacatgtcacatta 15276084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 83 - 241
Target Start/End: Original strand, 15456296 - 15456453
Alignment:
Q  83 atcattgcatttggctaagagaaatcccataagtgagattgacaccacatcttcatccaaaaccttaagactctaggtatatttgtcatttaacttatat 182  Q
    |||||| |||||| |||||||||| |||| || ||||||||||||||||||||||| | ||||||||||||  |||||||||| | ||| | |||||||     
T  15456296 atcattacatttgtctaagagaaa-cccacaaatgagattgacaccacatcttcattcgaaaccttaagacattaggtatattggacatcttacttatac 15456394  T
Q  183 gttgctgaatttatagtcttgcatccaatgtagaagttttactcacaaatgacacatta 241  Q
    ||||||  || | || |||| |||| |||||| ||| || ||||||| ||| |||||||    
T  15456395 gttgctcgatatttactcttacatcaaatgtaaaaggttaactcacacatgtcacatta 15456453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 113 - 250
Target Start/End: Original strand, 15276763 - 15276900
Alignment:
Q  113 aagtgagattgacaccacatcttcatccaaaaccttaagactctaggtatatttgtcatttaacttatatgttgctgaatttatagtcttgcatccaatg 212  Q
    ||||||||||||||||||||||||| | |||||||||| ||  || ||||||| ||||| | || |  ||||| || ||| |||| | |||| |||||||    
T  15276763 aagtgagattgacaccacatcttcacctaaaaccttaatacattatgtatattagtcatctcacattcatgtttctcaatatatacttttgcttccaatg 15276862  T
Q  213 tagaagttttactcacaaatgacacattaccatctctc 250  Q
    ||||||||| ||| ||| ||||||||||| ||| ||||    
T  15276863 tagaagtttaacttacacatgacacattaacatatctc 15276900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 113 - 250
Target Start/End: Original strand, 15457132 - 15457269
Alignment:
Q  113 aagtgagattgacaccacatcttcatccaaaaccttaagactctaggtatatttgtcatttaacttatatgttgctgaatttatagtcttgcatccaatg 212  Q
    ||||||||||||||||||||||||| | |||||||||| ||  || ||||||| ||||| | || |  ||||| || ||| |||| | |||| |||||||    
T  15457132 aagtgagattgacaccacatcttcacctaaaaccttaatacattatgtatattagtcatctcacattcatgtttctcaatatatacttttgcttccaatg 15457231  T
Q  213 tagaagttttactcacaaatgacacattaccatctctc 250  Q
    ||||||||| ||| ||| ||||||||||| ||| ||||    
T  15457232 tagaagtttaacttacacatgacacattaacatatctc 15457269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 115 - 185
Target Start/End: Complemental strand, 38291906 - 38291836
Alignment:
Q  115 gtgagattgacaccacatcttcatccaaaaccttaagactctaggtatatttgtcatttaacttatatgtt 185  Q
    ||||||||||||| |||||||||||||||||||||||||  ||||||||||  | |||| |||||||||||    
T  38291906 gtgagattgacacgacatcttcatccaaaaccttaagacattaggtatattgataatttcacttatatgtt 38291836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 113 - 186
Target Start/End: Original strand, 19263301 - 19263374
Alignment:
Q  113 aagtgagattgacaccacatcttcatccaaaaccttaagactctaggtatatttgtcatttaacttatatgttg 186  Q
    |||||||||||||||||||||| ||||| ||||||||||||  |||||||||  ||||| | |||||| |||||    
T  19263301 aagtgagattgacaccacatctccatcctaaaccttaagacattaggtatatgagtcatatcacttatttgttg 19263374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 95 - 164
Target Start/End: Original strand, 23140535 - 23140604
Alignment:
Q  95 ggctaagagaaatcccataagtgagattgacaccacatcttcatccaaaaccttaagactctaggtatat 164  Q
    ||||||||||| |||||||| ||| ||||||||||||| || | |||||||||||||||  |||||||||    
T  23140535 ggctaagagaattcccataaatgaaattgacaccacattttgacccaaaaccttaagacattaggtatat 23140604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 90 - 143
Target Start/End: Complemental strand, 38291385 - 38291332
Alignment:
Q  90 catttggctaagagaaatcccataagtgagattgacaccacatcttcatccaaa 143  Q
    |||||| |||||||||||||||||| | ||||||||||||||||| ||||||||    
T  38291385 catttgactaagagaaatcccataaataagattgacaccacatctgcatccaaa 38291332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 120 - 250
Target Start/End: Complemental strand, 760805 - 760675
Alignment:
Q  120 attgacaccacatcttcatccaaaaccttaagactctaggtatatttgtcatttaacttatatgttgctgaatttatagtcttgcatccaatgtagaagt 219  Q
    ||||||||||||| ||||| |||||   ||||||  |||||||||| |||| || ||| |||||||| | ||  |||| ||||||||| |||||||| ||    
T  760805 attgacaccacatattcattcaaaatagtaagacattaggtatattagtcacttcactgatatgttgtttaaagtatattcttgcatcaaatgtagatgt 760706  T
Q  220 tttactcacaaatgacacattaccatctctc 250  Q
    || ||||| | ||||| ||||  ||||||||    
T  760705 ttaactcatacatgacgcattcacatctctc 760675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 95 - 163
Target Start/End: Complemental strand, 13759049 - 13758981
Alignment:
Q  95 ggctaagagaaatcccataagtgagattgacaccacatcttcatccaaaaccttaagactctaggtata 163  Q
    |||||||||||  |||| || ||||||||||||||||| || | |||||||||||||||  ||||||||    
T  13759049 ggctaagagaatccccacaaatgagattgacaccacattttgacccaaaaccttaagacattaggtata 13758981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 199 - 250
Target Start/End: Complemental strand, 14715336 - 14715285
Alignment:
Q  199 tcttgcatccaatgtagaagttttactcacaaatgacacattaccatctctc 250  Q
    ||||||||| ||||||||||||| ||||||| |||| |||||| ||||||||    
T  14715336 tcttgcatcaaatgtagaagtttaactcacacatgaaacattaacatctctc 14715285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 113 - 171
Target Start/End: Complemental strand, 20874668 - 20874610
Alignment:
Q  113 aagtgagattgacaccacatcttcatccaaaaccttaagactctaggtatatttgtcat 171  Q
    ||||||||||||| |||||| ||||||||||||||||| ||  ||| ||||| ||||||    
T  20874668 aagtgagattgacgccacattttcatccaaaaccttaaaacattagatatatatgtcat 20874610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 83 - 188
Target Start/End: Original strand, 42797046 - 42797151
Alignment:
Q  83 atcattgcatttggctaagagaaatcccataagtgagattgacaccacatcttcatccaaaaccttaagactctaggtatatttgtcatttaacttatat 182  Q
    ||||||||||||| | |||| ||| |||| | |||| ||| |||||||||||  || ||||||||||||||  | |  ||||| ||||| | ||||||||    
T  42797046 atcattgcatttgaccaagaaaaaccccacacgtgaaattcacaccacatctaaattcaaaaccttaagacattggaaatattagtcatctcacttatat 42797145  T
Q  183 gttgct 188  Q
    ||||||    
T  42797146 gttgct 42797151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0169 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: scaffold0169
Description:

Target: scaffold0169; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 90 - 250
Target Start/End: Complemental strand, 5279 - 5120
Alignment:
Q  90 catttggctaagagaaatcccataagtgagattgacaccacatcttcatccaaaaccttaagactctaggtatatttgtcatttaacttatatgttgctg 189  Q
    |||||| |||||||||| || | || ||| ||||||||||||| |||| ||||||   ||||||  |||||||||| |||| || |||||||||||| |     
T  5279 catttgactaagagaaa-ccaacaaatgatattgacaccacatattcacccaaaatagtaagacattaggtatattggtcacttcacttatatgttgttc 5181  T
Q  190 aatttatagtcttgcatccaatgtagaagttttactcacaaatgacacattaccatctctc 250  Q
    ||| |||| |||||||||||||||||| |||| ||||||  ||||||||||  ||||||||    
T  5180 aatgtatattcttgcatccaatgtagatgtttaactcacgcatgacacattctcatctctc 5120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 52; Significance: 6e-21; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 99 - 250
Target Start/End: Original strand, 12125429 - 12125580
Alignment:
Q  99 aagagaaatcccataagtgagattgacaccacatcttcatccaaaaccttaagactctaggtatatttgtcatttaacttatatgttgctgaatttatag 198  Q
    |||||||| |||| |||| |||| ||||||||||||  |||  |||| | |||||  |||||||||| ||||| | || ||||||||||| ||| ||||     
T  12125429 aagagaaaccccacaagtaagatagacaccacatctctatctcaaacatgaagacattaggtatattggtcatctcacatatatgttgctcaatatatac 12125528  T
Q  199 tcttgcatccaatgtagaagttttactcacaaatgacacattaccatctctc 250  Q
    ||||||||| || |||||||| | |||||| |||||||||||| ||||||||    
T  12125529 tcttgcatcaaaagtagaagtgtaactcactaatgacacattaacatctctc 12125580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 83 - 229
Target Start/End: Complemental strand, 9265443 - 9265297
Alignment:
Q  83 atcattgcatttggctaagagaaatcccataagtgagattgacaccacatcttcatccaaaaccttaagactctaggtatatttgtcatttaacttatat 182  Q
    |||||| |||||| |||||||||| || |||| |||||||||||| |||  ||||| ||||||||||||||  || ||||||| | ||| | ||||||||    
T  9265443 atcattacatttgtctaagagaaaccctataaatgagattgacactacagtttcattcaaaaccttaagacattaagtatattggacatctcacttatat 9265344  T
Q  183 gttgctgaatttatagtcttgcatccaatgtagaagttttactcaca 229  Q
    |||||| ||| | || ||||||||| |||||| ||| || |||||||    
T  9265343 gttgcttaatatttactcttgcatcaaatgtaaaaggttaactcaca 9265297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 83 - 241
Target Start/End: Complemental strand, 9266882 - 9266725
Alignment:
Q  83 atcattgcatttggctaagagaaatcccataagtgagattgacaccacatcttcatccaaaaccttaagactctaggtatatttgtcatttaacttatat 182  Q
    ||||||| ||||| |||||||||| |||  || ||||||||||||||||| ||||| ||||||||||||||  |||||||||| | ||| | |||||||     
T  9266882 atcattgtatttgtctaagagaaa-cccgcaaatgagattgacaccacattttcattcaaaaccttaagacattaggtatattggacatcttacttatac 9266784  T
Q  183 gttgctgaatttatagtcttgcatccaatgtagaagttttactcacaaatgacacatta 241  Q
    |||||| ||| | || |||| |||| |||||| ||| || ||||||| ||| |||||||    
T  9266783 gttgctcaatatttactcttacatcaaatgtaaaaggttaactcacacatgtcacatta 9266725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 99 - 250
Target Start/End: Complemental strand, 6436996 - 6436845
Alignment:
Q  99 aagagaaatcccataagtgagattgacaccacatcttcatccaaaaccttaagactctaggtatatttgtcatttaacttatatgttgctgaatttatag 198  Q
    ||||||||||| | ||||||||||||| ||||||||||| | || ||||||| ||  || ||||||| ||||| | || |  ||||| || ||| ||||     
T  6436996 aagagaaatccgacaagtgagattgacgccacatcttcacctaacaccttaatacattatgtatattagtcatctcacattcatgtttctcaatatatac 6436897  T
Q  199 tcttgcatccaatgtagaagttttactcacaaatgacacattaccatctctc 250  Q
    | |||| |||||||||||||||| ||| | | ||||||||||| ||| ||||    
T  6436896 ttttgcttccaatgtagaagtttaacttagacatgacacattaacatatctc 6436845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 99 - 241
Target Start/End: Complemental strand, 9262921 - 9262779
Alignment:
Q  99 aagagaaatcccataagtgagattgacaccacatcttcatccaaaaccttaagactctaggtatatttgtcatttaacttatatgttgctgaatttatag 198  Q
    ||||||||||| | | |||||||||| | |||||||||| | |||||||||| ||  || ||||||| ||||| | || |  ||||| || ||| ||||     
T  9262921 aagagaaatccgacatgtgagattgagagcacatcttcacctaaaaccttaatacattatgtatattagtcatctcacattcatgtttctcaatatatat 9262822  T
Q  199 tcttgcatccaatgtagaagttttactcacaaatgacacatta 241  Q
    | |||| |||||||||||||||| ||| ||| |||||||||||    
T  9262821 ttttgcttccaatgtagaagtttaacttacacatgacacatta 9262779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 113 - 186
Target Start/End: Complemental strand, 50492 - 50419
Alignment:
Q  113 aagtgagattgacaccacatcttcatccaaaaccttaagactctaggtatatttgtcatttaacttatatgttg 186  Q
    |||||||||||||||||||||| ||||| ||||||||||||  |||||||||  ||||| | |||||| |||||    
T  50492 aagtgagattgacaccacatctccatcccaaaccttaagacattaggtatatgagtcatatcacttatttgttg 50419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 113 - 250
Target Start/End: Original strand, 20934184 - 20934321
Alignment:
Q  113 aagtgagattgacaccacatcttcatccaaaaccttaagactctaggtatatttgtcatttaacttatatgttgctgaatttatagtcttgcatccaatg 212  Q
    |||||||||||||||||||| ||||   |||| |||||| |  ||||||||||  || | |  ||||||||||||| ||| |||| | |||||| |||||    
T  20934184 aagtgagattgacaccacatattcacgtaaaatcttaaggcattaggtatattgttcttctcgcttatatgttgctcaatatatattattgcatacaatg 20934283  T
Q  213 tagaagttttactcacaaatgacacattaccatctctc 250  Q
    ||||||||| | ||||| |||| |||| | ||||||||    
T  20934284 tagaagtttaagtcacacatgaaacataaacatctctc 20934321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 91 - 150
Target Start/End: Original strand, 14240497 - 14240556
Alignment:
Q  91 atttggctaagagaaatcccataagtgagattgacaccacatcttcatccaaaaccttaa 150  Q
    ||||| |||||||||| |||| || ||||||||||||||||||||||| ||||| |||||    
T  14240497 atttgtctaagagaaaccccacaaatgagattgacaccacatcttcattcaaaatcttaa 14240556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 98 - 239
Target Start/End: Original strand, 6087136 - 6087277
Alignment:
Q  98 taagagaaatcccataagtgagattgacaccacatcttcatccaaaaccttaagactctaggtatatttgtcatttaacttatatgttgctgaatttata 197  Q
    ||||||||| |||| || ||||||| |||| |||| |||| | |||||||| |||   |||||||| |||| || | ||||||||||||||   | ||||    
T  6087136 taagagaaaccccacaattgagattaacactacattttcacctaaaaccttgagatattaggtatacttgtaatctcacttatatgttgctagttatata 6087235  T
Q  198 gtcttgcatccaatgtagaagttttactcacaaatgacacat 239  Q
     | ||||||  ||||||||||||| ||| | | |||||||||    
T  6087236 ctattgcatgaaatgtagaagtttaacttaaacatgacacat 6087277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 194 - 250
Target Start/End: Complemental strand, 432031 - 431975
Alignment:
Q  194 tatagtcttgcatccaatgtagaagttttactcacaaatgacacattaccatctctc 250  Q
    |||| ||||||||||||||| ||| ||| |||||||| ||||||||||  |||||||    
T  432031 tatactcttgcatccaatgtcgaattttaactcacaattgacacattaatatctctc 431975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 51; Significance: 2e-20; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 8 - 82
Target Start/End: Original strand, 24360851 - 24360925
Alignment:
Q  8 aagcataggacaaccaaaaactaagacaacaatttatcataatgattggagctccgagggagcctgtaatgactt 82  Q
    ||||| ||||||||| |||| |||||||||| ||||||||||||||||||||||  |||||||||||||||||||    
T  24360851 aagcaaaggacaaccgaaaattaagacaacagtttatcataatgattggagctctaagggagcctgtaatgactt 24360925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 108 - 250
Target Start/End: Original strand, 11554328 - 11554470
Alignment:
Q  108 cccataagtgagattgacaccacatcttcatccaaaaccttaagactctaggtatatttgtcatttaacttatatgttgctgaatttatagtcttgcatc 207  Q
    ||||||| ||||||||||||||||| || | |||||||||||||||  |||||| ||  ||||| | ||| |||||||| | ||    || || ||||||    
T  11554328 cccataaatgagattgacaccacattttgacccaaaaccttaagacattaggtacatgggtcatctcactaatatgttgtttaacaactactcctgcatc 11554427  T
Q  208 caatgtagaagttttactcacaaatgacacattaccatctctc 250  Q
    ||||||||||| || ||||||| ||||||||||| ||||||||    
T  11554428 caatgtagaaggttaactcacacatgacacattaacatctctc 11554470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 108 - 250
Target Start/End: Complemental strand, 4852950 - 4852808
Alignment:
Q  108 cccataagtgagattgacaccacatcttcatccaaaaccttaagactctaggtatatttgtcatttaacttatatgttgctgaatttatagtcttgcatc 207  Q
    ||||||| ||||||||||||||||| || |||||||| ||||||||  | |||| ||  ||||| | ||| |||||||| | ||    || || ||||||    
T  4852950 cccataaatgagattgacaccacattttgatccaaaatcttaagacattcggtacatgggtcatctcactaatatgttgtttaacaactactcctgcatc 4852851  T
Q  208 caatgtagaagttttactcacaaatgacacattaccatctctc 250  Q
    ||||||||||| || ||||||| ||||||||||| ||||||||    
T  4852850 caatgtagaaggttaactcacacatgacacattaacatctctc 4852808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 116 - 186
Target Start/End: Complemental strand, 2970491 - 2970421
Alignment:
Q  116 tgagattgacaccacatcttcatccaaaaccttaagactctaggtatatttgtcatttaacttatatgttg 186  Q
    |||||||||||||||||||| ||||||||  |||||||   |||||||| |||||||| ||||||||||||    
T  2970491 tgagattgacaccacatctttatccaaaattttaagacatgaggtatatgtgtcatttcacttatatgttg 2970421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 115 - 191
Target Start/End: Original strand, 18089937 - 18090013
Alignment:
Q  115 gtgagattgacaccacatcttcatccaaaaccttaagactctaggtatatttgtcatttaacttatatgttgctgaa 191  Q
    ||||||||||||||||||||||| ||||||||||||| |  ||||||||||  |||| | | ||||||||| |||||    
T  18089937 gtgagattgacaccacatcttcacccaaaaccttaaggcattaggtatattgttcatctcaattatatgtttctgaa 18090013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 90 - 241
Target Start/End: Original strand, 34515068 - 34515220
Alignment:
Q  90 catttggctaagagaaatcccataagtgagattgacaccacatcttcatccaaaacct-taagactctaggtatatttgtcatttaacttatatgttgct 188  Q
    |||||| | |||||||| |||| || ||||||||||| ||||||||||  ||||||||  |||||  || ||||||| ||||| | || |  ||||| ||    
T  34515068 catttgaccaagagaaaccccaaaaatgagattgacatcacatcttcactcaaaacctgaaagacattatgtatattggtcatctcacattcatgtttct 34515167  T
Q  189 gaatttatagtcttgcatccaatgtagaagttttactcacaaatgacacatta 241  Q
     ||| |||| | |||| | |||||||||||||| ||| ||| |||||||||||    
T  34515168 caatatatacttttgctttcaatgtagaagtttaactgacacatgacacatta 34515220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 119 - 185
Target Start/End: Original strand, 26595896 - 26595962
Alignment:
Q  119 gattgacaccacatcttcatccaaaaccttaagactctaggtatatttgtcatttaacttatatgtt 185  Q
    |||||||| |||||| |||||||||||||||||||  |||||  ||| ||||| | |||||||||||    
T  26595896 gattgacatcacatcatcatccaaaaccttaagacattaggtgcattggtcatcttacttatatgtt 26595962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 118 - 250
Target Start/End: Complemental strand, 24398047 - 24397916
Alignment:
Q  118 agattgacaccacatcttcatccaaaaccttaagactctaggtatatttgtcatttaacttatatgttgctgaatttatagtcttgcatccaatgtagaa 217  Q
    ||||||||| ||| |||||| |||||| |||| |||  ||| |||||| ||||| | | |||||||||||| ||| |||| |  | | || |||||||||    
T  24398047 agattgacatcacctcttcacccaaaatcttacgacattagatatattagtcatctcatttatatgttgctcaatatatactaattcgtctaatgtagaa 24397948  T
Q  218 gttttactcacaaatgacacattaccatctctc 250  Q
    | || ||||||| |||||||||||  |||||||    
T  24397947 g-ttaactcacacatgacacattaatatctctc 24397916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 82 - 186
Target Start/End: Original strand, 29214195 - 29214299
Alignment:
Q  82 tatcattgcatttggctaagagaaatcccataagtgagattgacaccacatcttcatccaaaaccttaagactctaggtatatttgtcatttaacttata 181  Q
    ||||||| ||||  |||||||| || | |||||||||||||   | ||||||||||||||||  ||||||||  |||||||||  ||||| | |||| ||    
T  29214195 tatcattacattacgctaagagcaaccacataagtgagattattatcacatcttcatccaaagtcttaagacaataggtatatgagtcatctcacttgta 29214294  T
Q  182 tgttg 186  Q
    |||||    
T  29214295 tgttg 29214299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0159 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: scaffold0159
Description:

Target: scaffold0159; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 83 - 241
Target Start/End: Original strand, 32384 - 32542
Alignment:
Q  83 atcattgcatttggctaagagaaatcccataagtgagattgacaccacatcttcatccaaaaccttaagactctaggtatatttgtcatttaacttatat 182  Q
    ||||||||||||| | ||||||||  ||||| || | ||| ||| |||||||  |  ||||||||||||||| |  ||||||||||||| | ||||||||    
T  32384 atcattgcatttgaccaagagaaactccatacgtaaaattcacatcacatctaaactcaaaaccttaagactttgagtatatttgtcatctcacttatat 32483  T
Q  183 gttgctgaatttatagtcttgcatccaatgtagaagttttactcacaaatgacacatta 241  Q
    |||||| ||| |||| |||| |||  ||||||||||||| | |||||  ||||||||||    
T  32484 gttgctcaatatatactcttacatataatgtagaagtttaaatcacacgtgacacatta 32542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 45; Significance: 9e-17; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 98 - 250
Target Start/End: Original strand, 17474599 - 17474751
Alignment:
Q  98 taagagaaatcccataagtgagattgacaccacatcttcatccaaaaccttaagactctaggtatatttgtcatttaacttatatgttgctgaatttata 197  Q
    ||||||||| |||| |||| |||| |||||||||||| ||||| |||||| ||||   |||||||||||| ||| | ||  |||||||| | ||| ||||    
T  17474599 taagagaaaccccacaagtaagatggacaccacatctccatccgaaacctgaagatattaggtatatttgccatctcacaaatatgttgttcaatatata 17474698  T
Q  198 gtcttgcatccaatgtagaagttttactcacaaatgacacattaccatctctc 250  Q
     ||||||||| || |||||||||| ||||||| | ||| |||||  |||||||    
T  17474699 ctcttgcatcaaaagtagaagtttaactcacacacgacgcattaatatctctc 17474751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 98 - 250
Target Start/End: Complemental strand, 17578615 - 17578463
Alignment:
Q  98 taagagaaatcccataagtgagattgacaccacatcttcatccaaaaccttaagactctaggtatatttgtcatttaacttatatgttgctgaatttata 197  Q
    ||||||||| |||| |||| |||| |||||||||||| ||||| |||||| ||||   |||||||||||| ||| | ||  |||||||| | ||| ||||    
T  17578615 taagagaaaccccacaagtaagatggacaccacatctccatccgaaacctgaagatattaggtatatttgccatctcacaaatatgttgttcaatatata 17578516  T
Q  198 gtcttgcatccaatgtagaagttttactcacaaatgacacattaccatctctc 250  Q
     ||||||||| || |||||||||| ||||||| | ||| |||||  |||||||    
T  17578515 ctcttgcatcaaaagtagaagtttaactcacacacgacgcattaatatctctc 17578463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 91 - 228
Target Start/End: Complemental strand, 6202483 - 6202346
Alignment:
Q  91 atttggctaagagaaatcccataagtgagattgacaccacatcttcatccaaaaccttaagactctaggtatatttgtcatttaacttatatgttgctga 190  Q
    ||||| |||||||||| || |||| ||||||||||||  ||| ||||| ||||| ||||||||  || ||||||| | ||| | |||||||||||||| |    
T  6202483 atttgtctaagagaaaccctataaatgagattgacactgcattttcattcaaaatcttaagacattaagtatattggacatctcacttatatgttgctta 6202384  T
Q  191 atttatagtcttgcatccaatgtagaagttttactcac 228  Q
    || | || ||||||||| |||||| ||| || ||||||    
T  6202383 atatttactcttgcatcaaatgtaaaaggttaactcac 6202346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 98 - 250
Target Start/End: Original strand, 17510083 - 17510235
Alignment:
Q  98 taagagaaatcccataagtgagattgacaccacatcttcatccaaaaccttaagactctaggtatatttgtcatttaacttatatgttgctgaatttata 197  Q
    ||||||||| |||| |||| |||| |||||||||||| ||||| |||||| ||||   |||||||||| | ||| | ||  |||||||| | ||| ||||    
T  17510083 taagagaaaccccacaagtaagatggacaccacatctccatccgaaacctgaagatattaggtatattggccatctcacaaatatgttgttcaatatata 17510182  T
Q  198 gtcttgcatccaatgtagaagttttactcacaaatgacacattaccatctctc 250  Q
     ||||||||| || |||||||||| ||||||| | ||| |||||  |||||||    
T  17510183 ctcttgcatcaaaagtagaagtttaactcacacacgacgcattaatatctctc 17510235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 98 - 250
Target Start/End: Complemental strand, 17543131 - 17542979
Alignment:
Q  98 taagagaaatcccataagtgagattgacaccacatcttcatccaaaaccttaagactctaggtatatttgtcatttaacttatatgttgctgaatttata 197  Q
    ||||||||| |||| |||| |||| |||||||||||| ||||| |||||| ||||   |||||||||| | ||| | ||  |||||||| | ||| ||||    
T  17543131 taagagaaaccccacaagtaagatggacaccacatctccatccgaaacctgaagatattaggtatattggccatctcacaaatatgttgttcaatatata 17543032  T
Q  198 gtcttgcatccaatgtagaagttttactcacaaatgacacattaccatctctc 250  Q
     ||||||||| || |||||||||| ||||||| | ||| |||||  |||||||    
T  17543031 ctcttgcatcaaaagtagaagtttaactcacacacgacgcattaatatctctc 17542979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 92 - 241
Target Start/End: Original strand, 38788064 - 38788213
Alignment:
Q  92 tttggctaagagaaatcccataagtgagattgacaccacatcttcatccaaaaccttaagactctaggtatatttgtcatttaacttatatgttgctgaa 191  Q
    |||| ||||||||||  ||| || ||||||||||||||||||||||| |||||  |||||||   ||||||||| | ||| | | |||||||||||| ||    
T  38788064 tttgtctaagagaaactccacaaatgagattgacaccacatcttcattcaaaattttaagacatcaggtatattggacatctcagttatatgttgctcaa 38788163  T
Q  192 tttatagtcttgcatccaatgtagaagttttactcacaaatgacacatta 241  Q
    | | || | |||| || |||||| ||| || ||||||| ||| |||||||    
T  38788164 tatttacttttgcgtcaaatgtaaaaggttaactcacacatgtcacatta 38788213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 83 - 152
Target Start/End: Original strand, 48553243 - 48553312
Alignment:
Q  83 atcattgcatttggctaagagaaatcccataagtgagattgacaccacatcttcatccaaaaccttaaga 152  Q
    ||||| |||||||| || ||||||||||| ||||||||||  || || ||||||||| ||||||||||||    
T  48553243 atcatcgcatttggttacgagaaatcccacaagtgagattatcaacatatcttcatcaaaaaccttaaga 48553312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 95 - 242
Target Start/End: Complemental strand, 24708597 - 24708450
Alignment:
Q  95 ggctaagagaaatcccataagtgagattgacaccacatcttcatccaaaaccttaagactctaggtatatttgtcatttaacttatatgttgctgaattt 194  Q
    |||||||||||| | || ||||||| || | | |||||||||||| |||  |||||     |||||||||| || |||| |||||||||||||| ||  |    
T  24708597 ggctaagagaaaccacacaagtgagtttcaaatcacatcttcatcaaaagtcttaaagtattaggtatattggttattttacttatatgttgctcaacat 24708498  T
Q  195 atagtcttgcatccaatgtagaagttttactcacaaatgacacattac 242  Q
    ||| |||| ||| ||||||| || ||| ||||| || |||||||||||    
T  24708497 atactcttacatacaatgtataattttaactcataattgacacattac 24708450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 121 - 164
Target Start/End: Complemental strand, 27938875 - 27938832
Alignment:
Q  121 ttgacaccacatcttcatccaaaaccttaagactctaggtatat 164  Q
    |||||||||||||| |||||||||||||||| || |||||||||    
T  27938875 ttgacaccacatctacatccaaaaccttaaggctttaggtatat 27938832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 175 - 249
Target Start/End: Original strand, 42078967 - 42079043
Alignment:
Q  175 acttatatgttgctgaatttatagtcttgcatccaatgta--gaagttttactcacaaatgacacattaccatctct 249  Q
    ||||| |||||||| ||| | || ||||||||| ||||||  ||||||| ||||||| ||||||||||| |||||||    
T  42078967 acttacatgttgctcaatatctactcttgcatcaaatgtatagaagtttaactcacacatgacacattaacatctct 42079043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0061 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 98 - 193
Target Start/End: Original strand, 45583 - 45678
Alignment:
Q  98 taagagaaatcccataagtgagattgacaccacatcttcatccaaaaccttaagactctaggtatatttgtcatttaacttatatgttgctgaatt 193  Q
    ||||||||| |||| |||||||||  |||||| ||||||| |||||| ||||||||  |||||||||||||||| | | |||||||||||| ||||    
T  45583 taagagaaaccccacaagtgagataaacaccaaatcttcacccaaaatcttaagacattaggtatatttgtcatctcatttatatgttgcttaatt 45678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 98 - 193
Target Start/End: Complemental strand, 153204 - 153109
Alignment:
Q  98 taagagaaatcccataagtgagattgacaccacatcttcatccaaaaccttaagactctaggtatatttgtcatttaacttatatgttgctgaatt 193  Q
    ||||||||| |||| |||||||||  |||||| ||||||| |||||| ||||||||  |||||||||||||||| | | |||||||||||| ||||    
T  153204 taagagaaaccccacaagtgagataaacaccaaatcttcacccaaaatcttaagacattaggtatatttgtcatctcatttatatgttgcttaatt 153109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 97 - 250
Target Start/End: Original strand, 31089469 - 31089623
Alignment:
Q  97 ctaagagaaatcccataagtgagattgacaccacatcttcatccaaaac-cttaagactctaggtatatttgtcatttaacttatatgttgctgaattta 195  Q
    |||||||||| | || ||||||||||||||||||||| ||| | ||||  ||| ||||  ||||||||||  |||| |  ||||||||||||| ||  ||    
T  31089469 ctaagagaaacctcacaagtgagattgacaccacatcctcaccaaaaaaacttcagacattaggtatattgatcatctcgcttatatgttgctcaaaata 31089568  T
Q  196 tagtcttgcatccaatgtagaagttttactcacaaatgacacattaccatctctc 250  Q
    || |||| |||||||||||||| ||| ||| ||| ||||||||||| ||| ||||    
T  31089569 tactctttcatccaatgtagaaatttaacttacatatgacacattaacatatctc 31089623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 99 - 250
Target Start/End: Complemental strand, 16853042 - 16852891
Alignment:
Q  99 aagagaaatcccataagtgagattgacaccacatcttcatccaaaaccttaagactctaggtatatttgtcatttaacttatatgttgctgaatttatag 198  Q
    ||||||||||| | | ||||||||||||||||||||||    |||||||||| ||  || ||||||| ||||| | || |  ||||| || ||| ||||     
T  16853042 aagagaaatccgacatgtgagattgacaccacatcttcccttaaaaccttaatacattatgtatattagtcatctcacattcatgtttctcaatatatac 16852943  T
Q  199 tcttgcatccaatgtagaagttttactcacaaatgacacattaccatctctc 250  Q
    | |||| |||||||||||||||| ||| ||| ||||||||||| ||| ||||    
T  16852942 ttttgcttccaatgtagaagtttaacttacacatgacacattaacatatctc 16852891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 123 - 171
Target Start/End: Complemental strand, 11976959 - 11976911
Alignment:
Q  123 gacaccacatcttcatccaaaaccttaagactctaggtatatttgtcat 171  Q
    |||| |||||||||||||||||||||||||| ||| |||||| ||||||    
T  11976959 gacaacacatcttcatccaaaaccttaagacactatgtatatgtgtcat 11976911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 113 - 250
Target Start/End: Original strand, 43387042 - 43387179
Alignment:
Q  113 aagtgagattgacaccacatcttcatccaaaaccttaagactctaggtatatttgtcatttaacttatatgttgctgaatttatagtcttgcatccaatg 212  Q
    |||| ||||||||| |||| ||||| |||||| ||||||||  ||| ||||   ||||||| ||||||||||| || ||  | || | |||||| |||||    
T  43387042 aagtaagattgacatcacaacttcacccaaaatcttaagacattagatatacgagtcatttcacttatatgtttctcaacatctactattgcattcaatg 43387141  T
Q  213 tagaagttttactcacaaatgacacattaccatctctc 250  Q
    |  || ||| |||||||  |||||||||| ||||||||    
T  43387142 tgtaattttaactcacacttgacacattaacatctctc 43387179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0191 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold0191
Description:

Target: scaffold0191; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 83 - 188
Target Start/End: Complemental strand, 12352 - 12247
Alignment:
Q  83 atcattgcatttggctaagagaaatcccataagtgagattgacaccacatcttcatccaaaaccttaagactctaggtatatttgtcatttaacttatat 182  Q
    |||||| |||||| |||||||||| ||||  | |||||||| |||||||||||||| ||||| ||||||||   ||||||||| | ||| | ||||||||    
T  12352 atcattacatttgtctaagagaaaccccacgaatgagattgccaccacatcttcattcaaaatcttaagacatcaggtatattggacatctcacttatat 12253  T
Q  183 gttgct 188  Q
    ||||||    
T  12252 gttgct 12247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 92 - 188
Target Start/End: Original strand, 10561 - 10657
Alignment:
Q  92 tttggctaagagaaatcccataagtgagattgacaccacatcttcatccaaaaccttaagactctaggtatatttgtcatttaacttatatgttgct 188  Q
    |||| |||||||||| || | ||||||||||||||| |||||||||||||||| |||| |||  | ||||| || ||||| | ||||||||||||||    
T  10561 tttgtctaagagaaaccctacaagtgagattgacactacatcttcatccaaaaacttaggacatttggtatgttcgtcatctcacttatatgttgct 10657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1312 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold1312
Description:

Target: scaffold1312; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 113 - 239
Target Start/End: Complemental strand, 128 - 2
Alignment:
Q  113 aagtgagattgacaccacatcttcatccaaaaccttaagactctaggtatatttgtcatttaacttatatgttgctgaatttatagtcttgcatccaatg 212  Q
    ||||||||||||||||||||||| |   |||| |||||| |  ||||||||||  || | |  ||||||||||||| ||| |||| | |||||| |||||    
T  128 aagtgagattgacaccacatctttacgtaaaatcttaaggcattaggtatattgttcttctcgcttatatgttgctcaatatatactattgcatacaatg 29  T
Q  213 tagaagttttactcacaaatgacacat 239  Q
    ||||||||| ||||||| |||| ||||    
T  28 tagaagtttaactcacacatgaaacat 2  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 90 - 150
Target Start/End: Original strand, 46261 - 46321
Alignment:
Q  90 catttggctaagagaaatcccataagtgagattgacaccacatcttcatccaaaaccttaa 150  Q
    |||||| ||||||||||| |||||||||| ||||||||||| || ||||| ||||||||||    
T  46261 catttgactaagagaaatgccataagtgatattgacaccacctcatcatctaaaaccttaa 46321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0284 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0284
Description:

Target: scaffold0284; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 116 - 214
Target Start/End: Original strand, 7539 - 7637
Alignment:
Q  116 tgagattgacaccacatcttcatccaaaaccttaagactctaggtatatttgtcatttaacttatatgttgctgaatttatagtcttgcatccaatgta 214  Q
    |||||||||||||||| |||||    ||||||||||||  ||||||| || ||||| |||||||||||||||| ||  | || |||| |||||||||||    
T  7539 tgagattgacaccacaacttcacatgaaaccttaagacattaggtattttggtcatctaacttatatgttgctcaaaatctactcttccatccaatgta 7637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.00000000009; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 113 - 151
Target Start/End: Complemental strand, 9048753 - 9048715
Alignment:
Q  113 aagtgagattgacaccacatcttcatccaaaaccttaag 151  Q
    |||||||||||||||||||||||||||||||| ||||||    
T  9048753 aagtgagattgacaccacatcttcatccaaaatcttaag 9048715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 124 - 221
Target Start/End: Original strand, 38012839 - 38012936
Alignment:
Q  124 acaccacatcttcatccaaaaccttaagactctaggtatatttgtcatttaacttatatgttgctgaatttatagtcttgcatccaatgtagaagttt 221  Q
    |||||||||||  || ||||||| ||| ||  | |||||||| ||||||| | |||||||||||| ||| | || |||| ||| ||||||||||||||    
T  38012839 acaccacatctaaattcaaaaccataaaacattgggtatattagtcatttcagttatatgttgctcaatatctactcttacatacaatgtagaagttt 38012936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 113 - 250
Target Start/End: Original strand, 38015875 - 38016012
Alignment:
Q  113 aagtgagattgacaccacatcttcatccaaaaccttaagactctaggtatatttgtcatttaacttatatgttgctgaatttatagtcttgcatccaatg 212  Q
    |||||||||||||| |||| ||||| |||||| |||||| |  ||| |||||  ||||| | |||||||||||||| ||  | || | |||||| |||||    
T  38015875 aagtgagattgacatcacaacttcacccaaaatcttaagtcattagatatatgagtcatctcacttatatgttgctcaacatctactattgcattcaatg 38015974  T
Q  213 tagaagttttactcacaaatgacacattaccatctctc 250  Q
    |   | ||| |||||||  |||||||||| ||||||||    
T  38015975 tgttattttaactcacacttgacacattaacatctctc 38016012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1743 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold1743
Description:

Target: scaffold1743; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 113 - 186
Target Start/End: Original strand, 185 - 258
Alignment:
Q  113 aagtgagattgacaccacatcttcatccaaaaccttaagactctaggtatatttgtcatttaacttatatgttg 186  Q
    |||||||||||||||||||||| ||||| ||||||||||||  ||| |||||  ||||| | |||||| |||||    
T  185 aagtgagattgacaccacatctccatcctaaaccttaagacattagatatatgagtcatatcacttatttgttg 258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0074 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0074
Description:

Target: scaffold0074; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 118 - 250
Target Start/End: Complemental strand, 30970 - 30839
Alignment:
Q  118 agattgacaccacatcttcatccaaaaccttaagactctaggtatatttgtcatttaacttatatgttgctgaatttatagtcttgcatccaatgtagaa 217  Q
    ||||||||| ||| |||||| |||||| |||| |||  ||| |||||| ||||| | | |||||||||||| ||| |||| | | ||| | |||||||||    
T  30970 agattgacatcacctcttcacccaaaatcttatgacattagatatattagtcatctcatttatatgttgctcaatatatactatcgcacctaatgtagaa 30871  T
Q  218 gttttactcacaaatgacacattaccatctctc 250  Q
    | || ||||||| |||||||||||  |||||||    
T  30870 g-ttaactcacacatgacacattaatatctctc 30839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 199 - 250
Target Start/End: Original strand, 95951 - 96002
Alignment:
Q  199 tcttgcatccaatgtagaagttttactcacaaatgacacattaccatctctc 250  Q
    ||||||||| ||||||||||||| ||||||| |||| |||||| ||||||||    
T  95951 tcttgcatcaaatgtagaagtttaactcacacatgaaacattaacatctctc 96002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1804 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold1804
Description:

Target: scaffold1804; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 127 - 165
Target Start/End: Complemental strand, 1072 - 1034
Alignment:
Q  127 ccacatcttcatccaaaaccttaagactctaggtatatt 165  Q
    |||||||||||||||||||||||||||  ||||||||||    
T  1072 ccacatcttcatccaaaaccttaagacaataggtatatt 1034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0211 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0211
Description:

Target: scaffold0211; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 98 - 135
Target Start/End: Original strand, 16017 - 16054
Alignment:
Q  98 taagagaaatcccataagtgagattgacaccacatctt 135  Q
    ||||||||||| || |||||||||||||||||||||||    
T  16017 taagagaaatcacacaagtgagattgacaccacatctt 16054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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