View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3231_low_90 (Length: 249)
Name: NF3231_low_90
Description: NF3231
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3231_low_90 |
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Alignment Details
Target: chr2 (Bit Score: 210; Significance: 1e-115; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 11 - 232
Target Start/End: Original strand, 28176753 - 28176974
Alignment:
| Q |
11 |
cagagaacatccgatgtgggactattatataagttttctatttcctctcttcttccttttcccacccaacaggtgtttcattcacttttgtaaacgcaac |
110 |
Q |
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| T |
28176753 |
cagagaacatccgatgtgggactattataaaagttttctatttcccctcttcttccttttcccacccaacaggtgtttcattcactcttgtaaacgcaac |
28176852 |
T |
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| Q |
111 |
cttgttgaaagtctccctctcttcaatcttcttgttcttctccctaatgattcactttcaaaggtttgaaagacgacgggaacacagtcacattattgac |
210 |
Q |
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| T |
28176853 |
cttgttgaaagtctccctctcttcaatcttcttgttcttctccctaatgattcactttcaaaggtttgaaagacgacgggaacacagtcacattattgac |
28176952 |
T |
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| Q |
211 |
catgttgcttctcaacgcactg |
232 |
Q |
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| T |
28176953 |
catgttgcttctcaacgcactg |
28176974 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 92 - 177
Target Start/End: Original strand, 28168718 - 28168803
Alignment:
| Q |
92 |
tcacttttgtaaacgcaaccttgttgaaagtctccctctcttcaatcttcttgttcttctccctaatgattcactttcaaaggttt |
177 |
Q |
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| T |
28168718 |
tcactcttgtaaactcaactttgttgaaaatctccctctcttcaatcttcttgttctggtccctaatgattcactatcaaaggttt |
28168803 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 92 - 196
Target Start/End: Original strand, 28158197 - 28158301
Alignment:
| Q |
92 |
tcacttttgtaaacgcaaccttgttgaaagtctccctctcttcaatcttcttgttcttctccctaatgattcactttcaaaggtttgaaagacgacggga |
191 |
Q |
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| T |
28158197 |
tcactcttgtatactcaaccttgttgaaaatctccctctctttaatcttcttgttctgattcctgatgattcactatcaaaggtttgaaccacgacggga |
28158296 |
T |
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| Q |
192 |
acaca |
196 |
Q |
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|||| |
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| T |
28158297 |
ccaca |
28158301 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 111 - 225
Target Start/End: Original strand, 28147172 - 28147292
Alignment:
| Q |
111 |
cttgttgaaagtctccctctcttca-------atcttcttgttcttctccctaatgattcactttcaaaggtttgaaagacgacgggaacacagtcacat |
203 |
Q |
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| T |
28147172 |
cttgttgaaagtctccctctcttcagtctttaatcttcttgttcttcttcctaatgattctctatcaaa-gtttgaacgacgatgggaccacatttgcgt |
28147270 |
T |
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| Q |
204 |
tattgaccatgttgcttctcaa |
225 |
Q |
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| T |
28147271 |
tattgactgcgttgcttctcaa |
28147292 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 14 - 74
Target Start/End: Original strand, 28158044 - 28158103
Alignment:
| Q |
14 |
agaacatccgatgtgggactattatataagttttctatttcctctcttcttccttttccca |
74 |
Q |
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| T |
28158044 |
agaacacccgatgtgggactattctattagttttctatttcc-atcttcttcctttaccca |
28158103 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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