View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3231_low_91 (Length: 249)
Name: NF3231_low_91
Description: NF3231
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3231_low_91 |
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Alignment Details
Target: chr1 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 16 - 244
Target Start/End: Original strand, 11840236 - 11840464
Alignment:
| Q |
16 |
aatatgtcattgatggataatttggtaagtgtaccaaattgtacaagtaataaattagtatgtaaattatctccacatgaattattgtttctacttgacg |
115 |
Q |
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| T |
11840236 |
aatatgtcattgatggataatttggtaagtgtaccaaattgtataagtaataaattagtatgtaaattgtctccacatggattgttgcttctacttgacg |
11840335 |
T |
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| Q |
116 |
attaaataatgcttaattaaaacattaaatagggggagtttcaagagttggttgcaattgaaaattaaataaagactttgatcagaatgataaaagacgg |
215 |
Q |
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| T |
11840336 |
attaaataatgcttaattaaaacattaaatagggggagtttcaagagttggttgcaattgaaaattaaataaagaatttgatcagaatgatgaaagacgg |
11840435 |
T |
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| Q |
216 |
ttaagattttatgaatcctctctatgttc |
244 |
Q |
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| T |
11840436 |
ttaagattgtctgaatcctctctatgttc |
11840464 |
T |
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Back To:
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Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 59 - 100
Target Start/End: Original strand, 20518161 - 20518202
Alignment:
| Q |
59 |
caagtaataaattagtatgtaaattatctccacatgaattat |
100 |
Q |
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| T |
20518161 |
caagtaataaattagtatgttaataatctccacatggattat |
20518202 |
T |
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