View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3231_low_92 (Length: 246)
Name: NF3231_low_92
Description: NF3231
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3231_low_92 |
 | |
|
| [»] scaffold0735 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0735 (Bit Score: 126; Significance: 4e-65; HSPs: 1)
Name: scaffold0735
Description:
Target: scaffold0735; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 98 - 227
Target Start/End: Original strand, 5494 - 5623
Alignment:
| Q |
98 |
ttcatatattttcataaaaatttactattttaaatctttaatgaacgtcttatggtcacccgttaaagattaatttgtgtactatgcttgtattggcaaa |
197 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
5494 |
ttcatatattttcataaaaatttactattttaaatctttaatgaacgtcttatggtcacccgttaaagattaatttgtgtactgtgcttgtattggcaaa |
5593 |
T |
|
| Q |
198 |
accctcgaatagcacgcaaacgatcacaaa |
227 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
5594 |
accctcgaatagcacgcaaacgatcacaaa |
5623 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 126; Significance: 4e-65; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 98 - 227
Target Start/End: Original strand, 42923762 - 42923891
Alignment:
| Q |
98 |
ttcatatattttcataaaaatttactattttaaatctttaatgaacgtcttatggtcacccgttaaagattaatttgtgtactatgcttgtattggcaaa |
197 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
42923762 |
ttcatatattttcataaaaatttactattttaaatctttaatgaacgtcttatggtcacccgttaaagattaatttgtgtactgtgcttgtattggcaaa |
42923861 |
T |
|
| Q |
198 |
accctcgaatagcacgcaaacgatcacaaa |
227 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
42923862 |
accctcgaatagcacgcaaacgatcacaaa |
42923891 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 23 - 86
Target Start/End: Original strand, 5657055 - 5657118
Alignment:
| Q |
23 |
cactctttaaaatttctaaataaagaagttatttattcaaaaagtttaataattcaattttcaa |
86 |
Q |
| |
|
||||||||||| ||| |||||||||||||||||| ||||||||||| || |||| |||||||| |
|
|
| T |
5657055 |
cactctttaaagtttttaaataaagaagttattttttcaaaaagttaaacaatttcattttcaa |
5657118 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 105 - 138
Target Start/End: Original strand, 44461649 - 44461682
Alignment:
| Q |
105 |
attttcataaaaatttactattttaaatctttaa |
138 |
Q |
| |
|
||||||||||||||||||||||| |||||||||| |
|
|
| T |
44461649 |
attttcataaaaatttactatttaaaatctttaa |
44461682 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 82
Target Start/End: Original strand, 37348347 - 37348415
Alignment:
| Q |
14 |
tctttaggtcactctttaaaatttctaaataaagaagttatttattcaaaaagtttaataattcaattt |
82 |
Q |
| |
|
|||||| ||||| |||||| ||| |||||||| || ||||| ||||||||| || ||||||||||||| |
|
|
| T |
37348347 |
tctttaagtcacactttaaggtttttaaataaaaaatttattcattcaaaaaattaaataattcaattt |
37348415 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University