View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3231_low_99 (Length: 239)
Name: NF3231_low_99
Description: NF3231
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3231_low_99 |
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Alignment Details
Target: chr1 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 18020565 - 18020785
Alignment:
| Q |
1 |
tttgatgaaacattaaaagttaccaattgagatagatttcctatttccttaggcaactccaatgtgaagtaattatttgcaatatgaagcctttgcaaat |
100 |
Q |
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||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18020565 |
tttgacgaaacattaaaagttaccaattgagatagatttcccatttccttaggcaactccaatgtgaagtaattatttgcaatatgaagcctttgcaaat |
18020664 |
T |
|
| Q |
101 |
tgcggcagtttgagatctcacgaggaagtggaccgctaaacctgttatcattcaaatcaatggcagtaagattctcaagtttacacaactcggaagggaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18020665 |
tgcggcagtttgagatctcacgaggaagtggaccgctaaacctgttatcattcaaatcaatggcagtaagattctcaagtttacacaactcggaagggaa |
18020764 |
T |
|
| Q |
201 |
gccaccggtaagcctgttacc |
221 |
Q |
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||||||||||||||||||||| |
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| T |
18020765 |
gccaccggtaagcctgttacc |
18020785 |
T |
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