View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3232_high_16 (Length: 238)
Name: NF3232_high_16
Description: NF3232
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3232_high_16 |
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Alignment Details
Target: chr7 (Bit Score: 222; Significance: 1e-122; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 34665521 - 34665300
Alignment:
| Q |
1 |
ttcttgataaaaatcaatggtggaagtggaatttgcatatgcaaacttaataccagtaaattgattattctcaagttaatttatatttgtaggtggctag |
100 |
Q |
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| T |
34665521 |
ttcttgataaaaatcaatggtggaagtggaatttgcatatgcaaacttaataccagtaaattgattattctcaagttaatttatatttgtaggtggctag |
34665422 |
T |
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| Q |
101 |
acaaggctgcaattgtaacagacgaagaagccaaaaatttgaataaactaccaaacttatggaacttagccactgtccatagagttgaagagttaaaatg |
200 |
Q |
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| T |
34665421 |
acaaggctgcaattgtaacagacgaagaagccaaaaatttgaataaactaccaaacttatggaacttagccactgtccatagagttgaagagttaaaatg |
34665322 |
T |
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| Q |
201 |
cctggttagaatgcttccaatt |
222 |
Q |
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| T |
34665321 |
cctggttagaatgcttccaatt |
34665300 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 152 - 199
Target Start/End: Complemental strand, 34658697 - 34658650
Alignment:
| Q |
152 |
caaacttatggaacttagccactgtccatagagttgaagagttaaaat |
199 |
Q |
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| T |
34658697 |
caaacttttggaaattagccactgtccatagagttgaggagttaaaat |
34658650 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 100 - 188
Target Start/End: Complemental strand, 34645722 - 34645634
Alignment:
| Q |
100 |
gacaaggctgcaattgtaacagacgaagaagccaaaaatttgaataaactaccaaacttatggaacttagccactgtccatagagttga |
188 |
Q |
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| T |
34645722 |
gacaaggctgcaattatcacagaagaagaggccaaagattcaaatgcaccaccaaacctttggaatttagtcactgtccatagagttga |
34645634 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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