View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3232_high_4 (Length: 536)
Name: NF3232_high_4
Description: NF3232
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3232_high_4 |
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Alignment Details
Target: chr7 (Bit Score: 391; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 8 - 521
Target Start/End: Original strand, 45241032 - 45241542
Alignment:
| Q |
8 |
ccaagaatattgtttaattataatttataacaatatcattcttacattaagctaaaaaagaatttcaaaatagaaaaatatacttgtatgatcctttcaa |
107 |
Q |
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|||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45241032 |
ccaaaaatattgtttaattatagtttataacaatatcattcttacattaagctaaaaaagaatttcaaaatagaaaaatatacttgtatgatcctttcaa |
45241131 |
T |
|
| Q |
108 |
aacaataggtttcaccatctcatttaaaatgctatggaatataaaattcaaatattaaaattctgattaattagcttaccnnnnnnntgtcttgattaat |
207 |
Q |
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| T |
45241132 |
aacaataggtttcaccatctcatttaaaatgctatggaatatcaaattccaatattaaaattctgattaattagcttaccaaaaaaatgtcttgattaat |
45241231 |
T |
|
| Q |
208 |
tcggcatccgactagttatgtcagttgccnnnnnnnnnnnnnnnnnnngattccagatatttgttcaacaattttaaacaggagcctatagactagaagc |
307 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45241232 |
tcggcatccgactagttatgtcagttgccaaaaaaaaaaaaaaaaa--gattccagatatttgttcaacaattttaaacaggagcctatagactagaagc |
45241329 |
T |
|
| Q |
308 |
cttgttggatctttcttgcttccatgcagaaataagaaagggtaaaagaattgcacattaattaccattggttaaaagcaaagtcaacaatgatccaaaa |
407 |
Q |
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| T |
45241330 |
cctgttggatctttcttgcttccatgcagaaataagaaagggtaaaagaattgcacattaattaccattggttaaaagcaaagtcaacaatgatccaaaa |
45241429 |
T |
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| Q |
408 |
aattgataaaattgtccttgttgttaatgttaatacatgcaatgtggcaggaatacctttcaagcaaacaatgagaagaattgaatgatcattgatctaa |
507 |
Q |
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| T |
45241430 |
aattgataaaattgtccttgttgtt-atgttaaaacatgcaatgtagcagggatacctttcaagcaaacaatgagaagaattgaatgatcattgatctaa |
45241528 |
T |
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| Q |
508 |
aggacaaaaaacat |
521 |
Q |
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|||||||||||||| |
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| T |
45241529 |
aggacaaaaaacat |
45241542 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 338 - 518
Target Start/End: Original strand, 45219166 - 45219346
Alignment:
| Q |
338 |
aataagaaagggtaaaagaattgcacattaattaccattggttaaaagcaaagtcaacaatgatccaaaaaattgataaaattgtccttgttgttaatgt |
437 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
45219166 |
aataagaaagggtaaaagaattgcacattaattaccattggttaaaagcaaagtcaacaatgatccaaaaaattgataaaattgttcttgttgttaatgt |
45219265 |
T |
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| Q |
438 |
taatacatgcaatgtggcaggaatacctttcaagcaaacaatgagaagaattgaatgatcattgatctaaaggacaaaaaa |
518 |
Q |
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| T |
45219266 |
taaaacatgcaatgtggcagggatacctttcaagcaaacaatgagaagaattgaatgatcattgatctaaaagaaaaaaaa |
45219346 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 123; E-Value: 6e-63
Query Start/End: Original strand, 32 - 186
Target Start/End: Original strand, 45218993 - 45219147
Alignment:
| Q |
32 |
ttataacaatatcattcttacattaagctaaaaaagaatttcaaaatagaaaaatatacttgtatgatcctttcaaaacaataggtttcaccatctcatt |
131 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
45218993 |
ttataacaatatcattcttacattaggctaaaaaagaatttcaaaaaagaaaaatatacttgtatgatcctttcaaaacaatgggtttcaccatctcatt |
45219092 |
T |
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| Q |
132 |
taaaatgctatggaatataaaattcaaatattaaaattctgattaattagcttac |
186 |
Q |
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||||||| |||||||||| || ||| ||||||||||||||||||||||| ||||| |
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| T |
45219093 |
taaaatggtatggaatatcaacttccaatattaaaattctgattaattatcttac |
45219147 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 33 - 155
Target Start/End: Original strand, 10340100 - 10340221
Alignment:
| Q |
33 |
tataacaatatcattcttacattaagctaaaaaagaatttcaaaatagaaaa----atatacttgtatgatcctttcaaaacaataggtttcaccatctc |
128 |
Q |
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||||||| ||||||||||||||| |||||||| || || |||| |||||| ||||| | ||||||||||||||||||| |||||| | ||||| |
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| T |
10340100 |
tataacagtatcattcttacattttgctaaaaatgattt--aaaaaagaaaacacaatataatcgtatgatcctttcaaaaca---ggtttcgctatctc |
10340194 |
T |
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| Q |
129 |
atttaaaatgctatggaatataaaatt |
155 |
Q |
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||||||||| |||||||||| ||||| |
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| T |
10340195 |
atttaaaatagtatggaatatgaaatt |
10340221 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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