View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3232_high_8 (Length: 324)

Name: NF3232_high_8
Description: NF3232
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3232_high_8
NF3232_high_8
[»] chr5 (1 HSPs)
chr5 (1-306)||(2138114-2138412)


Alignment Details
Target: chr5 (Bit Score: 260; Significance: 1e-145; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 1 - 306
Target Start/End: Complemental strand, 2138412 - 2138114
Alignment:
Q  1 aagacttgatcaaagaggtggttagttaattaattaattaaagctatgaaaatccaagtgcaattccagaagggaatggacggtggtgtagttgttattt 100  Q
    |||||||||| |||||||||||||||||||||||||||||       |  |||||||||||| |||||||||||||||||||||||||||||||||||||    
T  2138412 aagacttgattaaagaggtggttagttaattaattaatta-------gttaatccaagtgcagttccagaagggaatggacggtggtgtagttgttattt 2138320  T
Q  101 tctttgaagatcaaagcctgttccctcacgcaagcacaatcagttcatcttagtgaggtaagacaagtttgtggatattgatattatcctctatattact 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2138319 tctttgaagatcaaagcctgttccctcacgcaagcacaatcagttcatcttagtgaggtaagacaagtttgtggatattgatattatcctctatattact 2138220  T
Q  201 acatcatatgcacatattaaaatcaaggctctatgtcggtttagttttctatttcgatctcttttcccttttcaagtcatatattattttttaggagtat 300  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2138219 acatcatatgcacaaattaaaatcaaggctctatgtcggtttagttttctatttcgatctcttttcccttttcaagtcatatattattttttaggagtat 2138120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University