View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3232_low_1 (Length: 873)

Name: NF3232_low_1
Description: NF3232
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3232_low_1
NF3232_low_1
[»] chr5 (6 HSPs)
chr5 (61-869)||(15433710-15434505)
chr5 (776-869)||(900885-900978)
chr5 (777-869)||(2250327-2250419)
chr5 (773-835)||(30839716-30839778)
chr5 (828-869)||(30839962-30840003)
chr5 (776-869)||(8317381-8317474)
[»] chr3 (6 HSPs)
chr3 (61-330)||(8184942-8185210)
chr3 (777-869)||(26847736-26847828)
chr3 (774-868)||(2043729-2043823)
chr3 (565-641)||(8184848-8184924)
chr3 (776-869)||(40034727-40034820)
chr3 (781-832)||(25288789-25288840)
[»] chr6 (9 HSPs)
chr6 (775-869)||(29396443-29396537)
chr6 (777-869)||(18141383-18141475)
chr6 (781-869)||(22956984-22957072)
chr6 (781-869)||(23831320-23831408)
chr6 (783-869)||(22995981-22996065)
chr6 (783-869)||(23792335-23792419)
chr6 (781-860)||(21203302-21203381)
chr6 (777-858)||(9961216-9961297)
chr6 (806-869)||(7045191-7045254)
[»] chr7 (3 HSPs)
chr7 (775-869)||(38174619-38174713)
chr7 (773-869)||(45849487-45849584)
chr7 (777-866)||(6494744-6494833)
[»] chr1 (3 HSPs)
chr1 (776-869)||(9388560-9388653)
chr1 (776-869)||(10366565-10366658)
chr1 (781-832)||(16752331-16752382)
[»] chr2 (2 HSPs)
chr2 (773-869)||(33538172-33538268)
chr2 (802-869)||(40611590-40611657)
[»] chr4 (5 HSPs)
chr4 (778-869)||(3684733-3684824)
chr4 (806-869)||(33152512-33152575)
chr4 (777-835)||(2728256-2728314)
chr4 (777-858)||(45283151-45283232)
chr4 (781-834)||(48150556-48150609)
[»] chr8 (3 HSPs)
chr8 (781-860)||(37819877-37819956)
chr8 (776-823)||(24511975-24512022)
chr8 (779-824)||(36796082-36796127)


Alignment Details
Target: chr5 (Bit Score: 655; Significance: 0; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 655; E-Value: 0
Query Start/End: Original strand, 61 - 869
Target Start/End: Original strand, 15433710 - 15434505
Alignment:
Q  61 tattcttctgcaaatttattttagatctttcacaggtacattaattgtatctttataaataaagtttcatacttacatccaattttacgttaccatttta 160  Q
    |||||||||||||||| |||||||||||||||||||||||||||||     |||||||||||||||||||||||||||||||||||||||||||||||||    
T  15433710 tattcttctgcaaattgattttagatctttcacaggtacattaatt-----tttataaataaagtttcatacttacatccaattttacgttaccatttta 15433804  T
Q  161 acatatcttactattactactttatttagccttgatcaatattttgttaataaccaaaccgagttggaaaattaattcacaatcttctgttcaatgtaat 260  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15433805 acatatcttactattactactttatttagccttgatctatattttgttaataaccaaaccgagttggaaaattaattcacaatcttctgttcaatgtaat 15433904  T
Q  261 ataccacacattgacgatgcttttcatgttcaaagtatttatatgaactcggtgatcttagaattggatgacnnnnnnnnattatccttgccaaatgcca 360  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||         ||||||||||||||||||||    
T  15433905 ataccacacattgacaatgcttttcatgttcaaagtatttatatgaactcggtgatcttagaattggatgaagttttttgattatccttgccaaatgcca 15434004  T
Q  361 actgtgaattttgtctatactatttgtattttataacgtttaaattttctggtggatccatacgccactgtattgtatgatatcaattaggaaaattttc 460  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15434005 actgtgaattttgtctatactatttgtattttataacttttaaattttctggtggatccatacgccactgtattgtatgatatcaattaggaaaattttc 15434104  T
Q  461 cctatttcatnnnnnnnnnnnnnnnnnttcgatgaatataatatataagagatgaacatttgttaattacttttttcacgactctgctgttttccttgtt 560  Q
    ||||||||||                 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15434105 cctatttcataaaaaaaaaaaa-----ttcgatgaatataatatataagagatgaacatttgttaattacttttttcacgactctgctgttttccttgtt 15434199  T
Q  561 tttgtatgtcattctgattgttgtaacatattactttgcagctgcattgtgcgtactgtcatactttccatttccattaccatgcatactctgctcaggc 660  Q
    ||||||||||||||||||||||||||||||   |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||     
T  15434200 tttgtatgtcattctgattgttgtaacata---ctttgcagctgcattgtgtgtactgtcatactttccatttccattaccatgcatactctgctcaggg 15434296  T
Q  661 atgctttctctggttatgtagcgaaacatcgctagacgaaaaattgatcaaccaccataaatagttgacatgattgtaaaagaaacttgtaacaggttga 760  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15434297 atgctttctgtggttatgtagcgaaacatcgctagacgaaaaattgatcaaccaccataaatagttgacatgattgtaaaagaaacttgtaacaggttga 15434396  T
Q  761 aatgccaaatccaatagaggaatgatatgtgaacaaccaaattgtacaaccaacaacttatttgctatttttaatgatattttgcttgatttcgatttct 860  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||    
T  15434397 aatgccaaatccaatagaggaatgatatgtgaacaaccaaattgtacaaccaacaacttatttgctacttttaatgatattttgcttgattttgatttct 15434496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 776 - 869
Target Start/End: Original strand, 900885 - 900978
Alignment:
Q  776 agaggaatgatatgtgaacaaccaaattgtacaaccaacaacttatttgctatttttaatgatattttgcttgatttcgatttctgtgctcctc 869  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| | ||||  ||||||||    
T  900885 agaggaatgatatgtgaacaaccaaattgtacaaccaacaacttatttgctatttttaatgatattttgcatgattttgttttccatgctcctc 900978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 777 - 869
Target Start/End: Original strand, 2250327 - 2250419
Alignment:
Q  777 gaggaatgatatgtgaacaaccaaattgtacaaccaacaacttatttgctatttttaatgatattttgcttgatttcgatttctgtgctcctc 869  Q
    ||||||||||||||||| || |||||||||||| |||||| ||||||  |||||||||||||||||||| |||||| |||||| || ||||||    
T  2250327 gaggaatgatatgtgaagaatcaaattgtacaatcaacaatttatttattatttttaatgatattttgcatgattttgatttccgtactcctc 2250419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 773 - 835
Target Start/End: Original strand, 30839716 - 30839778
Alignment:
Q  773 aatagaggaatgatatgtgaacaaccaaattgtacaaccaacaacttatttgctatttttaat 835  Q
    ||||||||||||||||||||||||| ||||||||| |||||||| ||| ||||||||||||||    
T  30839716 aatagaggaatgatatgtgaacaactaaattgtacgaccaacaatttacttgctatttttaat 30839778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 828 - 869
Target Start/End: Original strand, 30839962 - 30840003
Alignment:
Q  828 tttttaatgatattttgcttgatttcgatttctgtgctcctc 869  Q
    |||||||| |||||||||||||||||||||||||| ||||||    
T  30839962 tttttaataatattttgcttgatttcgatttctgtactcctc 30840003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 776 - 869
Target Start/End: Complemental strand, 8317474 - 8317381
Alignment:
Q  776 agaggaatgatatgtgaacaaccaaattgtacaaccaacaacttatttgctatttttaatgatattttgcttgatttcgatttctgtgctcctc 869  Q
    ||||||||||||| |||||| |    |||||||||||||||||| |||||||||||| |  |||||||   |||||| |||||  |||||||||    
T  8317474 agaggaatgatatttgaacatcatttttgtacaaccaacaacttttttgctattttttaatatatttttactgattttgatttgcgtgctcctc 8317381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 178; Significance: 2e-95; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 178; E-Value: 2e-95
Query Start/End: Original strand, 61 - 330
Target Start/End: Complemental strand, 8185210 - 8184942
Alignment:
Q  61 tattcttctgcaaatttattttagatctttcacaggtacattaattgtatctttataaataaagtttcatacttacatccaattttacgttaccatttta 160  Q
    |||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||| ||| ||||||||||||||||| ||  |||||||||||    
T  8185210 tattcttctgcaaagttattttagatctttaacaggtacattaattgtatctttataaataaggtt-catacttacatccaattctattttaccatttta 8185112  T
Q  161 acatatcttactattactactttatttagccttgatcaatattttgttaataaccaaaccgagttggaaaattaattcacaatcttctgttcaatgtaat 260  Q
    ||||||||||||| |||||||| | |||||| |  |||||||||||||||| |||||||||||||||||||||||||||||||||| ||||| |||||||    
T  8185111 acatatcttactagtactacttaaattagcccttttcaatattttgttaatgaccaaaccgagttggaaaattaattcacaatcttttgttcgatgtaat 8185012  T
Q  261 ataccacacattgacgatgcttttcatgttcaaagtatttatatgaactcggtgatcttagaattggatg 330  Q
    |||||||| |||||||||||||| |||||||||||| |||||| |||||| |||||||| ||||||||||    
T  8185011 ataccacatattgacgatgctttccatgttcaaagtgtttatacgaactcagtgatcttggaattggatg 8184942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 73; E-Value: 7e-33
Query Start/End: Original strand, 777 - 869
Target Start/End: Complemental strand, 26847828 - 26847736
Alignment:
Q  777 gaggaatgatatgtgaacaaccaaattgtacaaccaacaacttatttgctatttttaatgatattttgcttgatttcgatttctgtgctcctc 869  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||| | |||| |||||||||    
T  26847828 gaggaatgatatgtgaacaatcaaattgtacaaccaacaacttatttgctatttttaatgatattttgcatgattttgttttccgtgctcctc 26847736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 774 - 868
Target Start/End: Original strand, 2043729 - 2043823
Alignment:
Q  774 atagaggaatgatatgtgaacaaccaaattgtacaaccaacaacttatttgctatttttaatgatattttgcttgatttcgatttctgtgctcct 868  Q
    ||||||||||||||||| || ||| |||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||| |||||||||    
T  2043729 atagaggaatgatatgtaaataactaaattgtacaaccaacaacttatttgctatctttaatgatattttgattgatttcgatttatgtgctcct 2043823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 565 - 641
Target Start/End: Complemental strand, 8184924 - 8184848
Alignment:
Q  565 tatgtcattctgattgttgtaacatattactttgcagctgcattgtgcgtactgtcatactttccatttccattacc 641  Q
    ||||||||||||| |||||| |||||||| ||||||||||||||||| ||||||||| |||||||||||||||||||    
T  8184924 tatgtcattctgactgttgtgacatattattttgcagctgcattgtgtgtactgtcacactttccatttccattacc 8184848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 776 - 869
Target Start/End: Original strand, 40034727 - 40034820
Alignment:
Q  776 agaggaatgatatgtgaacaaccaaattgtacaaccaacaacttatttgctatttttaatgatattttgcttgatttcgatttctgtgctcctc 869  Q
    |||| |||||||||||||||  ||||||||||||||||||||||||||  |||||||||| ||||||| | ||||||  ||||| |||||||||    
T  40034727 agagaaatgatatgtgaacattcaaattgtacaaccaacaacttatttattatttttaataatattttacatgattttaatttccgtgctcctc 40034820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 781 - 832
Target Start/End: Original strand, 25288789 - 25288840
Alignment:
Q  781 aatgatatgtgaacaaccaaattgtacaaccaacaacttatttgctattttt 832  Q
    |||||| ||||||||||  ||||||||||||||||| |||||| ||||||||    
T  25288789 aatgatttgtgaacaacataattgtacaaccaacaatttatttactattttt 25288840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 83; Significance: 7e-39; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 83; E-Value: 7e-39
Query Start/End: Original strand, 775 - 869
Target Start/End: Original strand, 29396443 - 29396537
Alignment:
Q  775 tagaggaatgatatgtgaacaaccaaattgtacaaccaacaacttatttgctatttttaatgatattttgcttgatttcgatttctgtgctcctc 869  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||    
T  29396443 tagaggaatgatatgtgaacagccaaattgtacaaccaacaacttatttgctatttttaatgatattttgattgatttcgatttttgtgctcctc 29396537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 777 - 869
Target Start/End: Original strand, 18141383 - 18141475
Alignment:
Q  777 gaggaatgatatgtgaacaaccaaattgtacaaccaacaacttatttgctatttttaatgatattttgcttgatttcgatttctgtgctcctc 869  Q
    |||||||||||||||||||||||||| ||||||||| |||||||||| ||||||||||| ||||||| |||||||||||||| ||| ||||||    
T  18141383 gaggaatgatatgtgaacaaccaaatcgtacaaccagcaacttattttctatttttaataatattttacttgatttcgatttatgtactcctc 18141475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 781 - 869
Target Start/End: Original strand, 22956984 - 22957072
Alignment:
Q  781 aatgatatgtgaacaaccaaattgtacaaccaacaacttatttgctatttttaatgatattttgcttgatttcgatttctgtgctcctc 869  Q
    |||||||||| || |||||||||||||||||||||||||| |||||||||||||| ||||||| |||||||||||||| ||||||||||    
T  22956984 aatgatatgtaaataaccaaattgtacaaccaacaacttacttgctatttttaataatattttacttgatttcgatttatgtgctcctc 22957072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 781 - 869
Target Start/End: Complemental strand, 23831408 - 23831320
Alignment:
Q  781 aatgatatgtgaacaaccaaattgtacaaccaacaacttatttgctatttttaatgatattttgcttgatttcgatttctgtgctcctc 869  Q
    |||||||||| || |||||||||||||||||||||||||| |||||||||||||| ||||||| |||||||||||||| ||||||||||    
T  23831408 aatgatatgtaaataaccaaattgtacaaccaacaacttacttgctatttttaataatattttacttgatttcgatttatgtgctcctc 23831320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 783 - 869
Target Start/End: Original strand, 22995981 - 22996065
Alignment:
Q  783 tgatatgtgaacaaccaaattgtacaaccaacaacttatttgctatttttaatgatattttgcttgatttcgatttctgtgctcctc 869  Q
    |||||||||||||||||||||||| ||||||||||||  |||||||||||||| ||||||||| |||||||||||| ||||||||||    
T  22995981 tgatatgtgaacaaccaaattgtataaccaacaactt--ttgctatttttaataatattttgcctgatttcgatttatgtgctcctc 22996065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 783 - 869
Target Start/End: Complemental strand, 23792419 - 23792335
Alignment:
Q  783 tgatatgtgaacaaccaaattgtacaaccaacaacttatttgctatttttaatgatattttgcttgatttcgatttctgtgctcctc 869  Q
    |||||||||||||||||||||||| ||||||||||||  |||||||||||||| ||||||||| |||||||||||| ||||||||||    
T  23792419 tgatatgtgaacaaccaaattgtataaccaacaactt--ttgctatttttaataatattttgcctgatttcgatttatgtgctcctc 23792335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 781 - 860
Target Start/End: Complemental strand, 21203381 - 21203302
Alignment:
Q  781 aatgatatgtgaacaaccaaattgtacaaccaacaacttatttgctatttttaatgatattttgcttgatttcgatttct 860  Q
    ||||||||||||||||||||||||||||| |||||||||| ||| |||||||||| || ||||||||||||| |||||||    
T  21203381 aatgatatgtgaacaaccaaattgtacaatcaacaacttacttgatatttttaataatgttttgcttgattttgatttct 21203302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 777 - 858
Target Start/End: Complemental strand, 9961297 - 9961216
Alignment:
Q  777 gaggaatgatatgtgaacaaccaaattgtacaaccaacaacttatttgctatttttaatgatattttgcttgatttcgattt 858  Q
    ||||||||||||||||||| |    ||||||||||||||||||||||||||||||| |  || ||||| |||||||||||||    
T  9961297 gaggaatgatatgtgaacatctcgtttgtacaaccaacaacttatttgctattttttaatattttttgattgatttcgattt 9961216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 806 - 869
Target Start/End: Complemental strand, 7045254 - 7045191
Alignment:
Q  806 acaaccaacaacttatttgctatttttaatgatattttgcttgatttcgatttctgtgctcctc 869  Q
    ||||||||||| | |||| ||||||||||  |||||||| |||| || ||||||||||||||||    
T  7045254 acaaccaacaattcatttactatttttaaatatattttgtttgaatttgatttctgtgctcctc 7045191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 75; Significance: 4e-34; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 775 - 869
Target Start/End: Original strand, 38174619 - 38174713
Alignment:
Q  775 tagaggaatgatatgtgaacaaccaaattgtacaaccaacaacttatttgctatttttaatgatattttgcttgatttcgatttctgtgctcctc 869  Q
    ||||||||||||| ||||||||||||||||||||||||| |||||| ||| |||||||||| |||||||||||||||||||||||||||||||||    
T  38174619 tagaggaatgatacgtgaacaaccaaattgtacaaccaataacttacttgatatttttaataatattttgcttgatttcgatttctgtgctcctc 38174713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 773 - 869
Target Start/End: Complemental strand, 45849584 - 45849487
Alignment:
Q  773 aatagaggaatgatatgtgaacaaccaaattgtacaaccaacaacttatttgctatttttaatgatattttgcttga-tttcgatttctgtgctcctc 869  Q
    ||||||||||||||| ||||||||||||||||||||||||| || |||||||||||||||||| ||||||||||||| |||| |||| ||||||||||    
T  45849584 aatagaggaatgatacgtgaacaaccaaattgtacaaccaataatttatttgctatttttaataatattttgcttgattttcaatttatgtgctcctc 45849487  T

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Target: chr7; HSP #3
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 777 - 866
Target Start/End: Original strand, 6494744 - 6494833
Alignment:
Q  777 gaggaatgatatgtgaacaaccaaattgtacaaccaacaacttatttgctatttttaatgatattttgcttgatttcgatttctgtgctc 866  Q
    ||||||||||||||||||||| ||||||||||| ||| ||||||||||||||||||||||||||||||| |||||| | |||| ||||||    
T  6494744 gaggaatgatatgtgaacaacaaaattgtacaatcaataacttatttgctatttttaatgatattttgcatgattttgttttccgtgctc 6494833  T

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Target: chr1 (Bit Score: 70; Significance: 4e-31; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 776 - 869
Target Start/End: Original strand, 9388560 - 9388653
Alignment:
Q  776 agaggaatgatatgtgaacaaccaaattgtacaaccaacaacttatttgctatttttaatgatattttgcttgatttcgatttctgtgctcctc 869  Q
    |||||||||||||||||||||  ||||||||||||||||||||||||| ||||||||||||||||||||  |||||||||||| ||||||||||    
T  9388560 agaggaatgatatgtgaacaattaaattgtacaaccaacaacttatttactatttttaatgatattttgtctgatttcgatttatgtgctcctc 9388653  T

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Target: chr1; HSP #2
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 776 - 869
Target Start/End: Original strand, 10366565 - 10366658
Alignment:
Q  776 agaggaatgatatgtgaacaaccaaattgtacaaccaacaacttatttgctatttttaatgatattttgcttgatttcgatttctgtgctcctc 869  Q
    |||||||||||| |||||||| ||||||||||||||||||||||||||| ||||||||||||||||||  ||||||||||||| ||||||||||    
T  10366565 agaggaatgatacgtgaacaatcaaattgtacaaccaacaacttatttgttatttttaatgatattttatttgatttcgatttatgtgctcctc 10366658  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 781 - 832
Target Start/End: Complemental strand, 16752382 - 16752331
Alignment:
Q  781 aatgatatgtgaacaaccaaattgtacaaccaacaacttatttgctattttt 832  Q
    ||||||||||||||| |  | ||||||||||||||||||| |||||||||||    
T  16752382 aatgatatgtgaacatcacatttgtacaaccaacaacttacttgctattttt 16752331  T

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Target: chr2 (Bit Score: 69; Significance: 2e-30; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 773 - 869
Target Start/End: Original strand, 33538172 - 33538268
Alignment:
Q  773 aatagaggaatgatatgtgaacaaccaaattgtacaaccaacaacttatttgctatttttaatgatattttgcttgatttcgatttctgtgctcctc 869  Q
    ||||||||||||||||||||| || |||||||||||||||||||||||||| ||||||||||||||||||||| |||||| |||||| || ||||||    
T  33538172 aatagaggaatgatatgtgaaaaatcaaattgtacaaccaacaacttatttactatttttaatgatattttgcatgattttgatttccgtactcctc 33538268  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 802 - 869
Target Start/End: Original strand, 40611590 - 40611657
Alignment:
Q  802 ttgtacaaccaacaacttatttgctatttttaatgatattttgcttgatttcgatttctgtgctcctc 869  Q
    |||||||||||||||||| |||||||||||| |  |||||||  ||||||| |||||  |||||||||    
T  40611590 ttgtacaaccaacaacttttttgctattttttaatatatttttattgattttgatttgcgtgctcctc 40611657  T

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Target: chr4 (Bit Score: 56; Significance: 1e-22; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 778 - 869
Target Start/End: Original strand, 3684733 - 3684824
Alignment:
Q  778 aggaatgatatgtgaacaaccaaattgtacaaccaacaacttatttgctatttttaatgatattttgcttgatttcgatttctgtgctcctc 869  Q
    |||||| ||||||||||||| |||||||| |||||||||  ||||||||||||||||| ||||||||  |||||||||||| ||||||||||    
T  3684733 aggaataatatgtgaacaactaaattgtaaaaccaacaatatatttgctatttttaataatattttgtctgatttcgatttttgtgctcctc 3684824  T

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Target: chr4; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 806 - 869
Target Start/End: Complemental strand, 33152575 - 33152512
Alignment:
Q  806 acaaccaacaacttatttgctatttttaatgatattttgcttgatttcgatttctgtgctcctc 869  Q
    |||||||||||||||||||||||||||||||||||||||| |||||| |||||| |||||||||    
T  33152575 acaaccaacaacttatttgctatttttaatgatattttgcatgattttgatttccgtgctcctc 33152512  T

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Target: chr4; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 777 - 835
Target Start/End: Original strand, 2728256 - 2728314
Alignment:
Q  777 gaggaatgatatgtgaacaaccaaattgtacaaccaacaacttatttgctatttttaat 835  Q
    ||||||||||||||||||||| ||||| |||||||||||||||| ||||||||||||||    
T  2728256 gaggaatgatatgtgaacaactaaattatacaaccaacaacttacttgctatttttaat 2728314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 777 - 858
Target Start/End: Complemental strand, 45283232 - 45283151
Alignment:
Q  777 gaggaatgatatgtgaacaaccaaattgtacaaccaacaacttatttgctatttttaatgatattttgcttgatttcgattt 858  Q
    ||||||||||||||||||| |  | ||||| ||||| |||||||||| |||||||| |  || ||||  |||||||||||||    
T  45283232 gaggaatgatatgtgaacatctcatttgtaaaaccagcaacttattttctattttttaatatttttttattgatttcgattt 45283151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 781 - 834
Target Start/End: Original strand, 48150556 - 48150609
Alignment:
Q  781 aatgatatgtgaacaaccaaattgtacaaccaacaacttatttgctatttttaa 834  Q
    |||||| |||||||| |  | |||||||||| ||||||||||||||||||||||    
T  48150556 aatgatttgtgaacatctcatttgtacaaccgacaacttatttgctatttttaa 48150609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 48; Significance: 6e-18; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 781 - 860
Target Start/End: Complemental strand, 37819956 - 37819877
Alignment:
Q  781 aatgatatgtgaacaaccaaattgtacaaccaacaacttatttgctatttttaatgatattttgcttgatttcgatttct 860  Q
    |||||||| |||||||| |||||||||||||||||| ||||||||||| |||||| |||||||   ||||||||||||||    
T  37819956 aatgatatttgaacaactaaattgtacaaccaacaatttatttgctatgtttaataatattttatctgatttcgatttct 37819877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 776 - 823
Target Start/End: Original strand, 24511975 - 24512022
Alignment:
Q  776 agaggaatgatatgtgaacaaccaaattgtacaaccaacaacttattt 823  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||    
T  24511975 agaggaatgatatctgaacaaccaaattgtacaaccaacaacttattt 24512022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 779 - 824
Target Start/End: Original strand, 36796082 - 36796127
Alignment:
Q  779 ggaatgatatgtgaacaaccaaattgtacaaccaacaacttatttg 824  Q
    ||||| ||| ||||||||| ||||| ||||||||||||||||||||    
T  36796082 ggaattataggtgaacaactaaattatacaaccaacaacttatttg 36796127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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