View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3232_low_12 (Length: 251)

Name: NF3232_low_12
Description: NF3232
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3232_low_12
NF3232_low_12
[»] chr4 (12 HSPs)
chr4 (21-186)||(29996363-29996525)
chr4 (196-251)||(46283186-46283241)
chr4 (213-251)||(17329116-17329154)
chr4 (198-248)||(43084514-43084564)
chr4 (216-251)||(11491215-11491250)
chr4 (216-251)||(22525452-22525487)
chr4 (216-251)||(40406956-40406991)
chr4 (216-250)||(16556516-16556550)
chr4 (197-251)||(25234835-25234889)
chr4 (217-251)||(43362165-43362199)
chr4 (217-251)||(45847923-45847957)
chr4 (216-248)||(49811404-49811436)
[»] chr2 (8 HSPs)
chr2 (196-251)||(33482618-33482673)
chr2 (196-245)||(25553122-25553171)
chr2 (216-251)||(3330197-3330232)
chr2 (216-251)||(34107558-34107593)
chr2 (216-251)||(42678320-42678355)
chr2 (217-251)||(5207156-5207190)
chr2 (214-251)||(29090479-29090516)
chr2 (199-251)||(37886204-37886256)
[»] chr7 (10 HSPs)
chr7 (196-251)||(22156161-22156216)
chr7 (196-251)||(22212076-22212131)
chr7 (216-251)||(4956088-4956123)
chr7 (216-251)||(12166146-12166181)
chr7 (196-251)||(37918744-37918799)
chr7 (216-251)||(40273885-40273920)
chr7 (216-251)||(43440753-43440788)
chr7 (216-251)||(48433706-48433741)
chr7 (216-250)||(25775609-25775643)
chr7 (207-251)||(3889787-3889831)
[»] chr1 (14 HSPs)
chr1 (216-251)||(15417813-15417848)
chr1 (213-250)||(8893925-8893962)
chr1 (216-251)||(12148569-12148604)
chr1 (216-251)||(24134620-24134655)
chr1 (216-251)||(25031493-25031528)
chr1 (196-251)||(25800309-25800364)
chr1 (199-250)||(35309789-35309840)
chr1 (207-250)||(49895800-49895843)
chr1 (216-251)||(50065074-50065109)
chr1 (216-250)||(3347699-3347733)
chr1 (216-250)||(10123049-10123083)
chr1 (217-251)||(34702310-34702344)
chr1 (197-250)||(30325020-30325073)
chr1 (196-245)||(39304199-39304248)
[»] chr8 (11 HSPs)
chr8 (196-250)||(8349459-8349513)
chr8 (216-251)||(1032634-1032669)
chr8 (216-251)||(5904370-5904405)
chr8 (216-251)||(38064041-38064076)
chr8 (216-250)||(11052580-11052614)
chr8 (216-250)||(36587646-36587680)
chr8 (216-250)||(38289231-38289265)
chr8 (216-250)||(43413882-43413916)
chr8 (196-233)||(37065493-37065530)
chr8 (219-251)||(3311504-3311536)
chr8 (196-251)||(8350500-8350556)
[»] chr5 (6 HSPs)
chr5 (197-251)||(15106864-15106918)
chr5 (196-251)||(930914-930969)
chr5 (196-251)||(15470597-15470652)
chr5 (216-251)||(31250211-31250246)
chr5 (216-251)||(38503253-38503288)
chr5 (216-251)||(43227930-43227965)
[»] chr3 (12 HSPs)
chr3 (197-251)||(33830345-33830399)
chr3 (216-251)||(11483677-11483712)
chr3 (216-251)||(29645823-29645858)
chr3 (196-247)||(32421416-32421467)
chr3 (216-251)||(33528201-33528236)
chr3 (216-251)||(38668192-38668227)
chr3 (216-251)||(47864700-47864735)
chr3 (216-251)||(50381778-50381813)
chr3 (216-250)||(9320955-9320989)
chr3 (216-250)||(29226391-29226425)
chr3 (196-250)||(50676843-50676897)
chr3 (197-250)||(48717478-48717531)
[»] scaffold0001 (1 HSPs)
scaffold0001 (216-251)||(419776-419811)
[»] chr6 (5 HSPs)
chr6 (216-251)||(6228256-6228291)
chr6 (216-251)||(17217022-17217057)
chr6 (216-251)||(18903363-18903398)
chr6 (216-251)||(20415558-20415593)
chr6 (216-246)||(7954918-7954948)


Alignment Details
Target: chr4 (Bit Score: 140; Significance: 2e-73; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 21 - 186
Target Start/End: Original strand, 29996363 - 29996525
Alignment:
Q  21 tgatcatagtttttgtcattaattgatagtaatagtcacaagggcatatgtagtcaaataagacggtcaattattttgtatgttcaaccattttaattat 120  Q
    ||||||||||||||||||||||||||||   ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  29996363 tgatcatagtttttgtcattaattgata---atagtcacaagggcatatgtagtaaaataagacggtcaattattttgtatgttcaaccattttaattat 29996459  T
Q  121 gttacggtatgatttattatttataatataatctagctggtccgagttttgaattagtgatttgac 186  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||    
T  29996460 gttacggtatgatttattatttataatataatctagctggtccgggttttgaattagtgagttgac 29996525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 196 - 251
Target Start/End: Complemental strand, 46283241 - 46283186
Alignment:
Q  196 gtcaagtagtttaatgattggagaaattcatcttaaagatgaataagtggggtgtc 251  Q
    |||||||||| || ||| | |||||||||| |||||||||||||||||||||||||    
T  46283241 gtcaagtagtctagtgactagagaaattcaccttaaagatgaataagtggggtgtc 46283186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 213 - 251
Target Start/End: Original strand, 17329116 - 17329154
Alignment:
Q  213 ttggagaaattcatcttaaagatgaataagtggggtgtc 251  Q
    |||||||||||||||||||||| ||||||||||||||||    
T  17329116 ttggagaaattcatcttaaagaggaataagtggggtgtc 17329154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 198 - 248
Target Start/End: Complemental strand, 43084564 - 43084514
Alignment:
Q  198 caagtagtttaatgattggagaaattcatcttaaagatgaataagtggggt 248  Q
    ||||||||||||||  | |||||||||| ||||||||||||||||||||||    
T  43084564 caagtagtttaatggctagagaaattcaccttaaagatgaataagtggggt 43084514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 216 - 251
Target Start/End: Original strand, 11491215 - 11491250
Alignment:
Q  216 gagaaattcatcttaaagatgaataagtggggtgtc 251  Q
    |||||||||| |||||||||||||||||||||||||    
T  11491215 gagaaattcaccttaaagatgaataagtggggtgtc 11491250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 216 - 251
Target Start/End: Complemental strand, 22525487 - 22525452
Alignment:
Q  216 gagaaattcatcttaaagatgaataagtggggtgtc 251  Q
    |||||||||||||||||| |||||||||||||||||    
T  22525487 gagaaattcatcttaaaggtgaataagtggggtgtc 22525452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 216 - 251
Target Start/End: Original strand, 40406956 - 40406991
Alignment:
Q  216 gagaaattcatcttaaagatgaataagtggggtgtc 251  Q
    |||||||||| |||||||||||||||||||||||||    
T  40406956 gagaaattcaccttaaagatgaataagtggggtgtc 40406991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 216 - 250
Target Start/End: Complemental strand, 16556550 - 16556516
Alignment:
Q  216 gagaaattcatcttaaagatgaataagtggggtgt 250  Q
    |||||||||| ||||||||||||||||||||||||    
T  16556550 gagaaattcaccttaaagatgaataagtggggtgt 16556516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 197 - 251
Target Start/End: Original strand, 25234835 - 25234889
Alignment:
Q  197 tcaagtagtttaatgattggagaaattcatcttaaagatgaataagtggggtgtc 251  Q
    ||||||||| || || || |||||||||| ||||||||||||||| |||||||||    
T  25234835 tcaagtagtctagtggttagagaaattcaccttaaagatgaataactggggtgtc 25234889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 217 - 251
Target Start/End: Original strand, 43362165 - 43362199
Alignment:
Q  217 agaaattcatcttaaagatgaataagtggggtgtc 251  Q
    ||||||||| |||||||||||||||||||||||||    
T  43362165 agaaattcaccttaaagatgaataagtggggtgtc 43362199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 217 - 251
Target Start/End: Original strand, 45847923 - 45847957
Alignment:
Q  217 agaaattcatcttaaagatgaataagtggggtgtc 251  Q
    ||||||||| |||||||||||||||||||||||||    
T  45847923 agaaattcaccttaaagatgaataagtggggtgtc 45847957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 216 - 248
Target Start/End: Original strand, 49811404 - 49811436
Alignment:
Q  216 gagaaattcatcttaaagatgaataagtggggt 248  Q
    |||||||||||||||||| ||||||||||||||    
T  49811404 gagaaattcatcttaaaggtgaataagtggggt 49811436  T

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Target: chr2 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 196 - 251
Target Start/End: Original strand, 33482618 - 33482673
Alignment:
Q  196 gtcaagtagtttaatgattggagaaattcatcttaaagatgaataagtggggtgtc 251  Q
    |||||||||| | ||| || ||||||||||||||||||||||||||||||||||||    
T  33482618 gtcaagtagtctgatggttagagaaattcatcttaaagatgaataagtggggtgtc 33482673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 196 - 245
Target Start/End: Original strand, 25553122 - 25553171
Alignment:
Q  196 gtcaagtagtttaatgattggagaaattcatcttaaagatgaataagtgg 245  Q
    |||||||| |||| || || ||||||||||||||||||||||||||||||    
T  25553122 gtcaagtaatttagtggttagagaaattcatcttaaagatgaataagtgg 25553171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 216 - 251
Target Start/End: Original strand, 3330197 - 3330232
Alignment:
Q  216 gagaaattcatcttaaagatgaataagtggggtgtc 251  Q
    |||||||||| |||||||||||||||||||||||||    
T  3330197 gagaaattcaccttaaagatgaataagtggggtgtc 3330232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 216 - 251
Target Start/End: Complemental strand, 34107593 - 34107558
Alignment:
Q  216 gagaaattcatcttaaagatgaataagtggggtgtc 251  Q
    |||||||||| |||||||||||||||||||||||||    
T  34107593 gagaaattcaccttaaagatgaataagtggggtgtc 34107558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 216 - 251
Target Start/End: Original strand, 42678320 - 42678355
Alignment:
Q  216 gagaaattcatcttaaagatgaataagtggggtgtc 251  Q
    |||||||||| |||||||||||||||||||||||||    
T  42678320 gagaaattcaccttaaagatgaataagtggggtgtc 42678355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 217 - 251
Target Start/End: Complemental strand, 5207190 - 5207156
Alignment:
Q  217 agaaattcatcttaaagatgaataagtggggtgtc 251  Q
    ||||||||||||||||| |||||||||||||||||    
T  5207190 agaaattcatcttaaaggtgaataagtggggtgtc 5207156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 214 - 251
Target Start/End: Complemental strand, 29090516 - 29090479
Alignment:
Q  214 tggagaaattcatcttaaagatgaataagtggggtgtc 251  Q
    |||||||||||| |||||||||||||||||| ||||||    
T  29090516 tggagaaattcaccttaaagatgaataagtgaggtgtc 29090479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 199 - 251
Target Start/End: Original strand, 37886204 - 37886256
Alignment:
Q  199 aagtagtttaatgattggagaaattcatcttaaagatgaataagtggggtgtc 251  Q
    ||||||| ||| | || |||||||||| ||||||| |||||||||||||||||    
T  37886204 aagtagtctaacggttagagaaattcaccttaaaggtgaataagtggggtgtc 37886256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 196 - 251
Target Start/End: Complemental strand, 22156216 - 22156161
Alignment:
Q  196 gtcaagtagtttaatgattggagaaattcatcttaaagatgaataagtggggtgtc 251  Q
    |||||||||| || || || ||||||||||||||| ||||||||||||||||||||    
T  22156216 gtcaagtagtctagtggttagagaaattcatcttatagatgaataagtggggtgtc 22156161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 196 - 251
Target Start/End: Complemental strand, 22212131 - 22212076
Alignment:
Q  196 gtcaagtagtttaatgattggagaaattcatcttaaagatgaataagtggggtgtc 251  Q
    |||||||||| || || || ||||||||||||||| ||||||||||||||||||||    
T  22212131 gtcaagtagtctagtggttagagaaattcatcttatagatgaataagtggggtgtc 22212076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 216 - 251
Target Start/End: Original strand, 4956088 - 4956123
Alignment:
Q  216 gagaaattcatcttaaagatgaataagtggggtgtc 251  Q
    |||||||||| |||||||||||||||||||||||||    
T  4956088 gagaaattcaccttaaagatgaataagtggggtgtc 4956123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 216 - 251
Target Start/End: Complemental strand, 12166181 - 12166146
Alignment:
Q  216 gagaaattcatcttaaagatgaataagtggggtgtc 251  Q
    |||||||||| |||||||||||||||||||||||||    
T  12166181 gagaaattcaccttaaagatgaataagtggggtgtc 12166146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 196 - 251
Target Start/End: Complemental strand, 37918799 - 37918744
Alignment:
Q  196 gtcaagtagtttaatgattggagaaattcatcttaaagatgaataagtggggtgtc 251  Q
    ||||||||||||| || || |||||||||| || ||||||||||||||| ||||||    
T  37918799 gtcaagtagtttagtggttagagaaattcacctaaaagatgaataagtgaggtgtc 37918744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 216 - 251
Target Start/End: Complemental strand, 40273920 - 40273885
Alignment:
Q  216 gagaaattcatcttaaagatgaataagtggggtgtc 251  Q
    |||||||||| |||||||||||||||||||||||||    
T  40273920 gagaaattcaccttaaagatgaataagtggggtgtc 40273885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 216 - 251
Target Start/End: Complemental strand, 43440788 - 43440753
Alignment:
Q  216 gagaaattcatcttaaagatgaataagtggggtgtc 251  Q
    |||||||||| |||||||||||||||||||||||||    
T  43440788 gagaaattcaccttaaagatgaataagtggggtgtc 43440753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 216 - 251
Target Start/End: Original strand, 48433706 - 48433741
Alignment:
Q  216 gagaaattcatcttaaagatgaataagtggggtgtc 251  Q
    |||||||||| |||||||||||||||||||||||||    
T  48433706 gagaaattcaccttaaagatgaataagtggggtgtc 48433741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 216 - 250
Target Start/End: Original strand, 25775609 - 25775643
Alignment:
Q  216 gagaaattcatcttaaagatgaataagtggggtgt 250  Q
    |||||||||| ||||||||||||||||||||||||    
T  25775609 gagaaattcaccttaaagatgaataagtggggtgt 25775643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 207 - 251
Target Start/End: Original strand, 3889787 - 3889831
Alignment:
Q  207 taatgattggagaaattcatcttaaagatgaataagtggggtgtc 251  Q
    ||||| || |||||||||| ||| |||||||||||||||||||||    
T  3889787 taatggttagagaaattcacctttaagatgaataagtggggtgtc 3889831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 216 - 251
Target Start/End: Original strand, 15417813 - 15417848
Alignment:
Q  216 gagaaattcatcttaaagatgaataagtggggtgtc 251  Q
    ||||||||||||||||||||||||||||||||||||    
T  15417813 gagaaattcatcttaaagatgaataagtggggtgtc 15417848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 213 - 250
Target Start/End: Complemental strand, 8893962 - 8893925
Alignment:
Q  213 ttggagaaattcatcttaaagatgaataagtggggtgt 250  Q
    ||||||||||||| ||||||||||||||||||||||||    
T  8893962 ttggagaaattcaccttaaagatgaataagtggggtgt 8893925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 216 - 251
Target Start/End: Original strand, 12148569 - 12148604
Alignment:
Q  216 gagaaattcatcttaaagatgaataagtggggtgtc 251  Q
    |||||||||| |||||||||||||||||||||||||    
T  12148569 gagaaattcaccttaaagatgaataagtggggtgtc 12148604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 216 - 251
Target Start/End: Original strand, 24134620 - 24134655
Alignment:
Q  216 gagaaattcatcttaaagatgaataagtggggtgtc 251  Q
    |||||||||| |||||||||||||||||||||||||    
T  24134620 gagaaattcaccttaaagatgaataagtggggtgtc 24134655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 216 - 251
Target Start/End: Original strand, 25031493 - 25031528
Alignment:
Q  216 gagaaattcatcttaaagatgaataagtggggtgtc 251  Q
    |||||||||| |||||||||||||||||||||||||    
T  25031493 gagaaattcaccttaaagatgaataagtggggtgtc 25031528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 196 - 251
Target Start/End: Original strand, 25800309 - 25800364
Alignment:
Q  196 gtcaagtagtttaatgattggagaaattcatcttaaagatgaataagtggggtgtc 251  Q
    ||||||||| |||||| ||  ||||||||| ||| |||||||||||||||||||||    
T  25800309 gtcaagtagcttaatggttaaagaaattcacctttaagatgaataagtggggtgtc 25800364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 199 - 250
Target Start/End: Complemental strand, 35309840 - 35309789
Alignment:
Q  199 aagtagtttaatgattggagaaattcatcttaaagatgaataagtggggtgt 250  Q
    ||||||||||| || |  ||||||||| ||||||||||||||||||||||||    
T  35309840 aagtagtttaacgactaaagaaattcaccttaaagatgaataagtggggtgt 35309789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 207 - 250
Target Start/End: Complemental strand, 49895843 - 49895800
Alignment:
Q  207 taatgattggagaaattcatcttaaagatgaataagtggggtgt 250  Q
    ||||| || |||||||||||||||||| ||||||||||||||||    
T  49895843 taatggttagagaaattcatcttaaaggtgaataagtggggtgt 49895800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 216 - 251
Target Start/End: Complemental strand, 50065109 - 50065074
Alignment:
Q  216 gagaaattcatcttaaagatgaataagtggggtgtc 251  Q
    |||||||||| |||||||||||||||||||||||||    
T  50065109 gagaaattcaccttaaagatgaataagtggggtgtc 50065074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 216 - 250
Target Start/End: Original strand, 3347699 - 3347733
Alignment:
Q  216 gagaaattcatcttaaagatgaataagtggggtgt 250  Q
    |||||||||| ||||||||||||||||||||||||    
T  3347699 gagaaattcaccttaaagatgaataagtggggtgt 3347733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 216 - 250
Target Start/End: Original strand, 10123049 - 10123083
Alignment:
Q  216 gagaaattcatcttaaagatgaataagtggggtgt 250  Q
    |||||||||| ||||||||||||||||||||||||    
T  10123049 gagaaattcaccttaaagatgaataagtggggtgt 10123083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 217 - 251
Target Start/End: Original strand, 34702310 - 34702344
Alignment:
Q  217 agaaattcatcttaaagatgaataagtggggtgtc 251  Q
    |||||||||||||||||||||||||||| ||||||    
T  34702310 agaaattcatcttaaagatgaataagtgaggtgtc 34702344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 197 - 250
Target Start/End: Original strand, 30325020 - 30325073
Alignment:
Q  197 tcaagtagtttaatgattggagaaattcatcttaaagatgaataagtggggtgt 250  Q
    |||||||||||| ||  | |||||||||||||||||||||||||| | ||||||    
T  30325020 tcaagtagtttagtggctagagaaattcatcttaaagatgaataaatagggtgt 30325073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 196 - 245
Target Start/End: Original strand, 39304199 - 39304248
Alignment:
Q  196 gtcaagtagtttaatgattggagaaattcatcttaaagatgaataagtgg 245  Q
    |||| |||||||| ||||  |||||||||||||||||||| |||||||||    
T  39304199 gtcatgtagtttagtgatcagagaaattcatcttaaagataaataagtgg 39304248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.00000000009; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 196 - 250
Target Start/End: Original strand, 8349459 - 8349513
Alignment:
Q  196 gtcaagtagtttaatgattggagaaattcatcttaaagatgaataagtggggtgt 250  Q
    |||||||||| || || || || ||||||||||||||||||||||||||||||||    
T  8349459 gtcaagtagtctagtggttagataaattcatcttaaagatgaataagtggggtgt 8349513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 216 - 251
Target Start/End: Complemental strand, 1032669 - 1032634
Alignment:
Q  216 gagaaattcatcttaaagatgaataagtggggtgtc 251  Q
    |||||||||| |||||||||||||||||||||||||    
T  1032669 gagaaattcaccttaaagatgaataagtggggtgtc 1032634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 216 - 251
Target Start/End: Original strand, 5904370 - 5904405
Alignment:
Q  216 gagaaattcatcttaaagatgaataagtggggtgtc 251  Q
    ||||||||||||||||||||||||||||||| ||||    
T  5904370 gagaaattcatcttaaagatgaataagtgggatgtc 5904405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 216 - 251
Target Start/End: Complemental strand, 38064076 - 38064041
Alignment:
Q  216 gagaaattcatcttaaagatgaataagtggggtgtc 251  Q
    |||||||||| |||||||||||||||||||||||||    
T  38064076 gagaaattcaccttaaagatgaataagtggggtgtc 38064041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 216 - 250
Target Start/End: Original strand, 11052580 - 11052614
Alignment:
Q  216 gagaaattcatcttaaagatgaataagtggggtgt 250  Q
    |||||||||| ||||||||||||||||||||||||    
T  11052580 gagaaattcaccttaaagatgaataagtggggtgt 11052614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 216 - 250
Target Start/End: Original strand, 36587646 - 36587680
Alignment:
Q  216 gagaaattcatcttaaagatgaataagtggggtgt 250  Q
    |||||||||||||||||||| ||||||||||||||    
T  36587646 gagaaattcatcttaaagataaataagtggggtgt 36587680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 216 - 250
Target Start/End: Original strand, 38289231 - 38289265
Alignment:
Q  216 gagaaattcatcttaaagatgaataagtggggtgt 250  Q
    |||||||||| ||||||||||||||||||||||||    
T  38289231 gagaaattcaccttaaagatgaataagtggggtgt 38289265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 216 - 250
Target Start/End: Original strand, 43413882 - 43413916
Alignment:
Q  216 gagaaattcatcttaaagatgaataagtggggtgt 250  Q
    |||||||||| ||||||||||||||||||||||||    
T  43413882 gagaaattcaccttaaagatgaataagtggggtgt 43413916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 196 - 233
Target Start/End: Complemental strand, 37065530 - 37065493
Alignment:
Q  196 gtcaagtagtttaatgattggagaaattcatcttaaag 233  Q
    ||||||||||||||||||| |||||||||| |||||||    
T  37065530 gtcaagtagtttaatgattagagaaattcaccttaaag 37065493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 219 - 251
Target Start/End: Complemental strand, 3311536 - 3311504
Alignment:
Q  219 aaattcatcttaaagatgaataagtggggtgtc 251  Q
    ||||||||||| |||||||||||||||||||||    
T  3311536 aaattcatctttaagatgaataagtggggtgtc 3311504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 196 - 251
Target Start/End: Complemental strand, 8350556 - 8350500
Alignment:
Q  196 gtcaagtagtttaatgattggagaaattcatcttaaa-gatgaataagtggggtgtc 251  Q
    |||||||||| || || || || |||||||||||||| |||||||||||||||||||    
T  8350556 gtcaagtagtctagtggttagataaattcatcttaaaagatgaataagtggggtgtc 8350500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.00000000009; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 197 - 251
Target Start/End: Original strand, 15106864 - 15106918
Alignment:
Q  197 tcaagtagtttaatgattggagaaattcatcttaaagatgaataagtggggtgtc 251  Q
    |||||||||||| || || |||||||| || ||||||||||||||||||||||||    
T  15106864 tcaagtagtttagtggttagagaaatttattttaaagatgaataagtggggtgtc 15106918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 196 - 251
Target Start/End: Original strand, 930914 - 930969
Alignment:
Q  196 gtcaagtagtttaatgattggagaaattcatcttaaagatgaataagtggggtgtc 251  Q
    ||||||||||||| ||| | |||||||||| ||| |||||||||||||||| ||||    
T  930914 gtcaagtagtttagtgactagagaaattcacctttaagatgaataagtgggatgtc 930969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 196 - 251
Target Start/End: Original strand, 15470597 - 15470652
Alignment:
Q  196 gtcaagtagtttaatgattggagaaattcatcttaaagatgaataagtggggtgtc 251  Q
    ||||||||||||| ||  | |||||||||| ||||||||||||||| |||||||||    
T  15470597 gtcaagtagtttagtggctagagaaattcaccttaaagatgaataaatggggtgtc 15470652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 216 - 251
Target Start/End: Complemental strand, 31250246 - 31250211
Alignment:
Q  216 gagaaattcatcttaaagatgaataagtggggtgtc 251  Q
    |||||||||| |||||||||||||||||||||||||    
T  31250246 gagaaattcaccttaaagatgaataagtggggtgtc 31250211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 216 - 251
Target Start/End: Original strand, 38503253 - 38503288
Alignment:
Q  216 gagaaattcatcttaaagatgaataagtggggtgtc 251  Q
    |||||||||| |||||||||||||||||||||||||    
T  38503253 gagaaattcaccttaaagatgaataagtggggtgtc 38503288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 216 - 251
Target Start/End: Complemental strand, 43227965 - 43227930
Alignment:
Q  216 gagaaattcatcttaaagatgaataagtggggtgtc 251  Q
    |||||||||| |||||||||||||||||||||||||    
T  43227965 gagaaattcaccttaaagatgaataagtggggtgtc 43227930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.00000000009; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 197 - 251
Target Start/End: Original strand, 33830345 - 33830399
Alignment:
Q  197 tcaagtagtttaatgattggagaaattcatcttaaagatgaataagtggggtgtc 251  Q
    |||||||||||| || || |||||||||| |||||| ||||||||||||||||||    
T  33830345 tcaagtagtttattggttagagaaattcaccttaaaaatgaataagtggggtgtc 33830399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 216 - 251
Target Start/End: Complemental strand, 11483712 - 11483677
Alignment:
Q  216 gagaaattcatcttaaagatgaataagtggggtgtc 251  Q
    |||||||||| |||||||||||||||||||||||||    
T  11483712 gagaaattcaccttaaagatgaataagtggggtgtc 11483677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 216 - 251
Target Start/End: Original strand, 29645823 - 29645858
Alignment:
Q  216 gagaaattcatcttaaagatgaataagtggggtgtc 251  Q
    |||||||||| |||||||||||||||||||||||||    
T  29645823 gagaaattcaccttaaagatgaataagtggggtgtc 29645858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 196 - 247
Target Start/End: Complemental strand, 32421467 - 32421416
Alignment:
Q  196 gtcaagtagtttaatgattggagaaattcatcttaaagatgaataagtgggg 247  Q
    ||||||||||||| ||  | || |||||||||||||||||||||||||||||    
T  32421467 gtcaagtagtttagtggctagaaaaattcatcttaaagatgaataagtgggg 32421416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 216 - 251
Target Start/End: Original strand, 33528201 - 33528236
Alignment:
Q  216 gagaaattcatcttaaagatgaataagtggggtgtc 251  Q
    |||||||||| |||||||||||||||||||||||||    
T  33528201 gagaaattcaccttaaagatgaataagtggggtgtc 33528236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 216 - 251
Target Start/End: Complemental strand, 38668227 - 38668192
Alignment:
Q  216 gagaaattcatcttaaagatgaataagtggggtgtc 251  Q
    |||||||||| |||||||||||||||||||||||||    
T  38668227 gagaaattcaccttaaagatgaataagtggggtgtc 38668192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 216 - 251
Target Start/End: Complemental strand, 47864735 - 47864700
Alignment:
Q  216 gagaaattcatcttaaagatgaataagtggggtgtc 251  Q
    |||||||||| |||||||||||||||||||||||||    
T  47864735 gagaaattcaccttaaagatgaataagtggggtgtc 47864700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 216 - 251
Target Start/End: Complemental strand, 50381813 - 50381778
Alignment:
Q  216 gagaaattcatcttaaagatgaataagtggggtgtc 251  Q
    |||||||||| |||||||||||||||||||||||||    
T  50381813 gagaaattcaccttaaagatgaataagtggggtgtc 50381778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 216 - 250
Target Start/End: Original strand, 9320955 - 9320989
Alignment:
Q  216 gagaaattcatcttaaagatgaataagtggggtgt 250  Q
    |||||||||||||| ||||||||||||||||||||    
T  9320955 gagaaattcatctttaagatgaataagtggggtgt 9320989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 216 - 250
Target Start/End: Complemental strand, 29226425 - 29226391
Alignment:
Q  216 gagaaattcatcttaaagatgaataagtggggtgt 250  Q
    |||||||||| ||||||||||||||||||||||||    
T  29226425 gagaaattcaccttaaagatgaataagtggggtgt 29226391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 196 - 250
Target Start/End: Original strand, 50676843 - 50676897
Alignment:
Q  196 gtcaagtagtttaatgattggagaaattcatcttaaagatgaataagtggggtgt 250  Q
    |||||||||| || || || |||||||||| ||||||| ||||||||||||||||    
T  50676843 gtcaagtagtctagtggttagagaaattcaccttaaaggtgaataagtggggtgt 50676897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 197 - 250
Target Start/End: Complemental strand, 48717531 - 48717478
Alignment:
Q  197 tcaagtagtttaatgattggagaaattcatcttaaagatgaataagtggggtgt 250  Q
    ||||||||||||  |  |||||||||||| |||||||||||| |||||||||||    
T  48717531 tcaagtagtttagcggctggagaaattcaccttaaagatgaaaaagtggggtgt 48717478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 216 - 251
Target Start/End: Complemental strand, 419811 - 419776
Alignment:
Q  216 gagaaattcatcttaaagatgaataagtggggtgtc 251  Q
    |||||||||| |||||||||||||||||||||||||    
T  419811 gagaaattcaccttaaagatgaataagtggggtgtc 419776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.000000005; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 216 - 251
Target Start/End: Original strand, 6228256 - 6228291
Alignment:
Q  216 gagaaattcatcttaaagatgaataagtggggtgtc 251  Q
    |||||||||| |||||||||||||||||||||||||    
T  6228256 gagaaattcaccttaaagatgaataagtggggtgtc 6228291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 216 - 251
Target Start/End: Complemental strand, 17217057 - 17217022
Alignment:
Q  216 gagaaattcatcttaaagatgaataagtggggtgtc 251  Q
    |||||||||| |||||||||||||||||||||||||    
T  17217057 gagaaattcaccttaaagatgaataagtggggtgtc 17217022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 216 - 251
Target Start/End: Original strand, 18903363 - 18903398
Alignment:
Q  216 gagaaattcatcttaaagatgaataagtggggtgtc 251  Q
    |||||||||| |||||||||||||||||||||||||    
T  18903363 gagaaattcaccttaaagatgaataagtggggtgtc 18903398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 216 - 251
Target Start/End: Original strand, 20415558 - 20415593
Alignment:
Q  216 gagaaattcatcttaaagatgaataagtggggtgtc 251  Q
    |||||||||| |||||||||||||||||||||||||    
T  20415558 gagaaattcaccttaaagatgaataagtggggtgtc 20415593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 216 - 246
Target Start/End: Original strand, 7954918 - 7954948
Alignment:
Q  216 gagaaattcatcttaaagatgaataagtggg 246  Q
    |||||||||||||||||||||||||||||||    
T  7954918 gagaaattcatcttaaagatgaataagtggg 7954948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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