View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3232_low_14 (Length: 245)
Name: NF3232_low_14
Description: NF3232
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3232_low_14 |
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Alignment Details
Target: chr8 (Bit Score: 177; Significance: 2e-95; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 19 - 229
Target Start/End: Complemental strand, 30853367 - 30853155
Alignment:
| Q |
19 |
tatattgtattttcttgactcactcacaaaagacgagtcatggaaactcatgttgtca-cataagattattctaaatttatgggtggtcttttctcaaaa |
117 |
Q |
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| T |
30853367 |
tatattgtattttcttgactcactcacaaaagacgagtcatggaaactcatgttgtcaacataagattattctaaatttatgggcggtcttttctcaaaa |
30853268 |
T |
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| Q |
118 |
ttaaaaaa-cgtaaagtccaactcaacttctttcatttcatggaagagatttaagtttctactcaagcaacattcatgccataaatttcttgagatgaaa |
216 |
Q |
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| T |
30853267 |
ttaaaaaaacgtatagtccaactcaacttctttcatttcatgggagagagttaagtttctactcaagcaacattcatgccacaaatttcttgagatgaaa |
30853168 |
T |
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| Q |
217 |
ttaccttaatttt |
229 |
Q |
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||||||||||||| |
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| T |
30853167 |
ttaccttaatttt |
30853155 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 22 - 225
Target Start/End: Original strand, 15077128 - 15077346
Alignment:
| Q |
22 |
attgtattttcttgactcactcacaaaagacgagtcatggaaactcatgttgtcacataa----------------gattattctaaatttatgggtggt |
105 |
Q |
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|||| ||||||||||||||||||||||||| ||| ||||||||||||||||||| |||| ||||||| |||| |||||| || |
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| T |
15077128 |
attgcattttcttgactcactcacaaaagataagttatggaaactcatgttgtcatataaaatatgcaagtcacaagattattttaaaattatggctgca |
15077227 |
T |
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| Q |
106 |
cttttctcaaaattaaaaaacgtaaagtccaactcaacttctttcatttcatggaagagatttaagtttctactcaagcaacattcatgccataaatttc |
205 |
Q |
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| T |
15077228 |
cttttctcaaagttaaaaaacgtaaagtcctcctcaacttcttccatttcttgggagagatttgagtttctactc-ggcaatgttcagggcacaaatttt |
15077326 |
T |
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| Q |
206 |
ttgagatgaaattaccttaa |
225 |
Q |
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|||||||||||||| |||| |
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| T |
15077327 |
ctgagatgaaattactttaa |
15077346 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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