View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3232_low_17 (Length: 228)
Name: NF3232_low_17
Description: NF3232
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3232_low_17 |
 | |
|
| [»] chr1 (4 HSPs) |
| |
|
| [»] chr4 (6 HSPs) |
| |
|
| [»] chr8 (1 HSPs) |
| |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 196; Significance: 1e-107; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 18416780 - 18417007
Alignment:
| Q |
1 |
gtcctctgtatgaataaacaagtccttttccaggcgaccctttaatatacctcaagatctgaaccacgacattccaatggctatcacaaggtgagttcaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18416780 |
gtcctctgtatgaataaacaagtccttttccaggtgaccctttaatatacctcaagattcaaaccacgacattccaatggctatcacaaggtgagttcaa |
18416879 |
T |
|
| Q |
101 |
aaattgactcacaacgctaacaacaaacgaaatatctggtctagtcatagtaagataattcagcttcccaactaaccttctgtatcttccttggtcagga |
200 |
Q |
| |
|
||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||| |
|
|
| T |
18416880 |
aaattgactcacaacactaacatcaaacgaaatatctggtctagtcatagtaagataattcagcttcccaactaaacttctgtatcttcctgggtcagga |
18416979 |
T |
|
| Q |
201 |
tacaaatctccttgattctgtaaaagct |
228 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
18416980 |
tacaaatctccttgattctgtaaaagct |
18417007 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 3 - 228
Target Start/End: Complemental strand, 52963940 - 52963719
Alignment:
| Q |
3 |
cctctgtatgaataaacaagtccttttccaggcgaccctttaatatacctcaagatctgaaccacgacattccaatggctatcacaaggtgagttcaaaa |
102 |
Q |
| |
|
||||||| |||||||| ||||||||||||||| ||||||||||||||||||||||| |||| || ||| || |||||||||||||||||||||||| || |
|
|
| T |
52963940 |
cctctgtctgaataaataagtccttttccaggtgaccctttaatatacctcaagattcgaactacaacagtcgaatggctatcacaaggtgagttcagaa |
52963841 |
T |
|
| Q |
103 |
attgactcacaacgctaacaacaaacgaaatatctggtctagtcatagtaagataattcagcttcccaactaaccttctgtatcttccttggtcaggata |
202 |
Q |
| |
|
||||||| ||||| |||||||||||| || |||||||||||||| ||| |||||||||||||||||||||||||| |||| ||| ||| || ||| |
|
|
| T |
52963840 |
attgacttacaacactaacaacaaacaaagtatctggtctagtcgcagtgagataattcagcttcccaactaacct----catctgcctgggttagaata |
52963745 |
T |
|
| Q |
203 |
caaatctccttgattctgtaaaagct |
228 |
Q |
| |
|
||| ||| |||||||| ||||||||| |
|
|
| T |
52963744 |
caactctacttgattcagtaaaagct |
52963719 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 75 - 185
Target Start/End: Original strand, 19937257 - 19937366
Alignment:
| Q |
75 |
caatggctatcacaaggtgagttcaaaaattgactcacaacgctaacaacaaacgaaatatctggtctagtcatagtaagataattcagcttcccaacta |
174 |
Q |
| |
|
|||||| ||||| ||||||| || | ||||||||||||||| ||||||||||| |||||| |||| | |||||||| || | |||||| ||| |||||| |
|
|
| T |
19937257 |
caatggttatcaaaaggtgaatttagaaattgactcacaacactaacaacaaa-aaaatatatggttttgtcatagtgaggtgattcagtttctcaacta |
19937355 |
T |
|
| Q |
175 |
accttctgtat |
185 |
Q |
| |
|
||||||||||| |
|
|
| T |
19937356 |
accttctgtat |
19937366 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 12 - 64
Target Start/End: Original strand, 19936964 - 19937016
Alignment:
| Q |
12 |
gaataaacaagtccttttccaggcgaccctttaatatacctcaagatctgaac |
64 |
Q |
| |
|
||||||||||||| || |||| |||||||||||||| ||||||||||| |||| |
|
|
| T |
19936964 |
gaataaacaagtcattctccaagcgaccctttaatacacctcaagatccgaac |
19937016 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 188; Significance: 1e-102; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 5 - 228
Target Start/End: Original strand, 37917159 - 37917382
Alignment:
| Q |
5 |
tctgtatgaataaacaagtccttttccaggcgaccctttaatatacctcaagatctgaaccacgacattccaatggctatcacaaggtgagttcaaaaat |
104 |
Q |
| |
|
||||| |||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37917159 |
tctgtctgaataaacaagtccttttccaggtgaccctttaatatacctcaagatccgaaccacgacattccaatggctatcacaaggtgagttcaaaaat |
37917258 |
T |
|
| Q |
105 |
tgactcacaacgctaacaacaaacgaaatatctggtctagtcatagtaagataattcagcttcccaactaaccttctgtatcttccttggtcaggataca |
204 |
Q |
| |
|
||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| | | |||||||||||| |
|
|
| T |
37917259 |
tgactcacaacactaacagcaaacgaaatatctggtctagtcatagtaagataattcagtttcccaactaaccttctgtatctgcttgggtcaggataca |
37917358 |
T |
|
| Q |
205 |
aatctccttgattctgtaaaagct |
228 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
37917359 |
aatctccttgattctgtaaaagct |
37917382 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 33834598 - 33834375
Alignment:
| Q |
1 |
gtcctctgtatgaataaacaagtccttttccaggcgaccctttaatatacctcaagatctgaaccacgacattccaatggctatcacaaggtgagttcaa |
100 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33834598 |
gtcctctgtcggaataaacaagtccttttccaggcgaccctttaatatacctcaagatccgaaccacgacattccaatggctatcacaaggtgagttcaa |
33834499 |
T |
|
| Q |
101 |
aaattgactcacaacgctaacaacaaacgaaatatctggtctagtcatagtaagataattcagcttcccaactaaccttctgtatcttccttggtcagga |
200 |
Q |
| |
|
||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| |||||||| |
|
|
| T |
33834498 |
aaattgactcacaacactaacagcaaacgaaatatctggtctagtcatagtaagataattcagcttcccaactaacct----tatctgcctgggtcagga |
33834403 |
T |
|
| Q |
201 |
tacaaatctccttgattctgtaaaagct |
228 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
33834402 |
tacaaatctccttgattctgtaaaagct |
33834375 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 63 - 194
Target Start/End: Original strand, 7566786 - 7566917
Alignment:
| Q |
63 |
accacgacattccaatggctatcacaaggtgagttcaaaaattgactcacaacgctaacaacaaacgaaatatctggtctagtcatagtaagataattca |
162 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| || |||||||||||| ||| || |||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
7566786 |
accacgacattccaatggctatcacaaggtgagttcagaagttgactcacaacactaccatcaaacgaaatatctggtctagtcatagtgagataattca |
7566885 |
T |
|
| Q |
163 |
gcttcccaactaaccttctgtatcttccttgg |
194 |
Q |
| |
|
|| |||||| ||||| |||||| | |||||| |
|
|
| T |
7566886 |
gcctcccaatcaacctcctgtatgtgccttgg |
7566917 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 62 - 191
Target Start/End: Complemental strand, 13041212 - 13041083
Alignment:
| Q |
62 |
aaccacgacattccaatggctatcacaaggtgagttcaaaaattgactcacaacgctaacaacaaacgaaatatctggtctagtcatagtaagataattc |
161 |
Q |
| |
|
|||||| |||| |||||| |||||||||| || ||||| |||||||| ||||| | || || | |||||||| ||||| ||||| || | ||||||| |
|
|
| T |
13041212 |
aaccacaacatcccaatgaatatcacaaggggaattcaagaattgactaacaacagtgactgcatatgaaatatcaggtcttgtcatggtcaaataattc |
13041113 |
T |
|
| Q |
162 |
agcttcccaactaaccttctgtatcttcct |
191 |
Q |
| |
|
||||||||||||||||| | ||| |||||| |
|
|
| T |
13041112 |
agcttcccaactaacctccggtaccttcct |
13041083 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 41 - 115
Target Start/End: Original strand, 23298794 - 23298868
Alignment:
| Q |
41 |
tttaatatacctcaagatctgaaccacgacattccaatggctatcacaaggtgagttcaaaaattgactcacaac |
115 |
Q |
| |
|
|||||||||||| |||||| ||||||| ||||||||||||||| ||||| |||| | |||||||||| |||| |
|
|
| T |
23298794 |
tttaatataccttaagatccgaaccactgcattccaatggctattacaagcccagtttagaaattgactcgcaac |
23298868 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 147 - 228
Target Start/End: Complemental strand, 27519205 - 27519124
Alignment:
| Q |
147 |
atagtaagataattcagcttcccaactaaccttctgtatcttccttggtcaggatacaaatctccttgattctgtaaaagct |
228 |
Q |
| |
|
||||| ||||||||||| ||| |||||| ||| |||||||| || | ||||||||| | ||||| ||||| |||||||||| |
|
|
| T |
27519205 |
atagtgagataattcagtttcacaactagcctcctgtatctgtctggatcaggataccactctccatgattttgtaaaagct |
27519124 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 123; Significance: 2e-63; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 3 - 228
Target Start/End: Complemental strand, 37000637 - 37000414
Alignment:
| Q |
3 |
cctctgtatgaataaacaagtccttttccaggcgaccctttaatatacctcaagatctgaaccacgacattccaatggctatcacaaggtgagttcaaaa |
102 |
Q |
| |
|
||||||| ||||||||||||||||||| ||||||||||||||||||||| ||||||| ||||||| |||||||||||||||||||||||||| | |||| |
|
|
| T |
37000637 |
cctctgtctgaataaacaagtcctttttcaggcgaccctttaatataccgcaagatccgaaccacagcattccaatggctatcacaaggtgagataaaaa |
37000538 |
T |
|
| Q |
103 |
attgactcacaacgctaacaacaaacgaaatatctggtctagtcatagtaagataattcagcttcccaactaaccttctgtatcttccttggtcaggata |
202 |
Q |
| |
|
||||||| |||| |||| |||||||||||||| || |||||||||| | |||||||| ||| |||||||| |||| |||||||||| | ||| |||||| |
|
|
| T |
37000537 |
attgact--caacactaaaaacaaacgaaatatatgctctagtcatattgagataatttagcctcccaacttacctcctgtatcttcttgggttaggata |
37000440 |
T |
|
| Q |
203 |
caaatctccttgattctgtaaaagct |
228 |
Q |
| |
|
|||||||||||| ||| ||||||||| |
|
|
| T |
37000439 |
caaatctccttggttccgtaaaagct |
37000414 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 86; Significance: 3e-41; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 63 - 203
Target Start/End: Complemental strand, 8984557 - 8984416
Alignment:
| Q |
63 |
accacgacattccaatggctatcacaaggtgagttcaaaaattgactcacaacgctaacaacaaacgaaatatctggtctagtcatagtaagataattca |
162 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| || |||||||||||| ||| || |||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
8984557 |
accacgacattccaatggctatcacaaggtgagttcagaagttgactcacaacactaccatcaaacgaaatatctggtctagtcatagtgagataattca |
8984458 |
T |
|
| Q |
163 |
gcttcccaactaaccttctgtatcttcctt-ggtcaggatac |
203 |
Q |
| |
|
|| |||||| ||||| |||||| | |||| ||||||||||| |
|
|
| T |
8984457 |
gcctcccaatcaacctcctgtatgtgccttgggtcaggatac |
8984416 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 60; Significance: 1e-25; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 61 - 228
Target Start/End: Original strand, 32331489 - 32331656
Alignment:
| Q |
61 |
gaaccacgacattccaatggctatcacaaggtgagttcaaaaattgactcacaacgctaacaacaaacgaaatatctggtctagtcatagtaagataatt |
160 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||| | |||| || ||||||| | |||| ||||||||||| ||||| ||||||||||||||||| |
|
|
| T |
32331489 |
gaaccacgacattccaattactatcacaaggtgagtttataaatagattcacaacaccaacagaaaacgaaatatacggtctggtcatagtaagataatt |
32331588 |
T |
|
| Q |
161 |
cagcttcccaactaaccttctgtatcttccttggtcaggatacaaatctccttgattctgtaaaagct |
228 |
Q |
| |
|
| | |||||||||||||| | ||||| ||| ||| |||||| ||||||||||| |||| ||||| |
|
|
| T |
32331589 |
cggtttcccaactaacctcatctatctgcctaggttaggatatggctctccttgattatgtagaagct |
32331656 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 62 - 191
Target Start/End: Original strand, 30592248 - 30592377
Alignment:
| Q |
62 |
aaccacgacattccaatggctatcacaaggtgagttcaaaaattgactcacaacgctaacaacaaacgaaatatctggtctagtcatagtaagataattc |
161 |
Q |
| |
|
|||||| ||| ||||||| |||||||||| || ||||| |||||||| ||||| || || || | |||||||| ||||| ||||| || | ||||||| |
|
|
| T |
30592248 |
aaccacaacaatccaatgaatatcacaaggggaattcaagaattgactaacaacactgactgcatatgaaatatcaggtcttgtcatggtcaaataattc |
30592347 |
T |
|
| Q |
162 |
agcttcccaactaaccttctgtatcttcct |
191 |
Q |
| |
|
||||||||||||||||| | ||| |||||| |
|
|
| T |
30592348 |
agcttcccaactaacctccggtaccttcct |
30592377 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 32 - 109
Target Start/End: Original strand, 35000930 - 35001007
Alignment:
| Q |
32 |
aggcgaccctttaatatacctcaagatctgaaccacgacattccaatggctatcacaaggtgagttcaaaaattgact |
109 |
Q |
| |
|
||||||||||||| |||||||| |||||||||| || ||||||||| || ||||||||||||||| | ||||||||| |
|
|
| T |
35000930 |
aggcgaccctttagtatacctctagatctgaactacttcattccaattgccatcacaaggtgagttaagaaattgact |
35001007 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 82 - 191
Target Start/End: Complemental strand, 53990262 - 53990153
Alignment:
| Q |
82 |
tatcacaaggtgagttcaaaaattgactcacaacgctaacaacaaacgaaatatctggtctagtcatagtaagataattcagcttcccaactaaccttct |
181 |
Q |
| |
|
|||||||||| || ||||| |||||||| ||||| || || || | |||||||| ||||| ||||| || | |||||||||||||||||||||||| | |
|
|
| T |
53990262 |
tatcacaaggggaattcaagaattgactaacaacactgactgcatatgaaatatcaggtcttgtcatggtcaaataattcagcttcccaactaacctccg |
53990163 |
T |
|
| Q |
182 |
gtatcttcct |
191 |
Q |
| |
|
||| |||||| |
|
|
| T |
53990162 |
gtaccttcct |
53990153 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 74 - 160
Target Start/End: Complemental strand, 9187735 - 9187649
Alignment:
| Q |
74 |
ccaatggctatcacaaggtgagttcaaaaattgactcacaacgctaacaacaaacgaaatatctggtctagtcatagtaagataatt |
160 |
Q |
| |
|
|||||| ||||||||||| | ||| | ||||||| |||||| ||| |||||||| | |||||| |||||||| | ||||||||||| |
|
|
| T |
9187735 |
ccaatgactatcacaaggagcgtttagaaattgattcacaatgctgacaacaaaggtaatatcaggtctagtgactgtaagataatt |
9187649 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 82 - 191
Target Start/End: Complemental strand, 17726520 - 17726411
Alignment:
| Q |
82 |
tatcacaaggtgagttcaaaaattgactcacaacgctaacaacaaacgaaatatctggtctagtcatagtaagataattcagcttcccaactaaccttct |
181 |
Q |
| |
|
|||||||||| || ||||| |||||||| ||||| || || || | |||||||| ||||| ||||| || | |||||||||||||||||||||||| | |
|
|
| T |
17726520 |
tatcacaaggggaattcaagaattgactaacaacactgactgcatatgaaatatcaggtcttgtcatggtcaaataattcagcttcccaactaacctccg |
17726421 |
T |
|
| Q |
182 |
gtatcttcct |
191 |
Q |
| |
|
||| |||||| |
|
|
| T |
17726420 |
gtaccttcct |
17726411 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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