View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3232_low_19 (Length: 220)

Name: NF3232_low_19
Description: NF3232
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3232_low_19
NF3232_low_19
[»] chr4 (24 HSPs)
chr4 (149-205)||(47156634-47156690)
chr4 (142-196)||(34450809-34450863)
chr4 (148-196)||(47157379-47157427)
chr4 (148-194)||(52129421-52129467)
chr4 (68-143)||(26067288-26067363)
chr4 (147-192)||(26764301-26764346)
chr4 (146-190)||(14527582-14527626)
chr4 (148-192)||(36248399-36248443)
chr4 (68-128)||(46250823-46250883)
chr4 (146-197)||(13925648-13925699)
chr4 (153-192)||(18363657-18363696)
chr4 (153-192)||(36599232-36599271)
chr4 (148-190)||(24666129-24666171)
chr4 (154-192)||(26354236-26354274)
chr4 (147-185)||(34941501-34941539)
chr4 (153-187)||(36253492-36253526)
chr4 (68-129)||(24916072-24916133)
chr4 (78-147)||(28715371-28715440)
chr4 (87-147)||(4608653-4608713)
chr4 (148-192)||(6057003-6057047)
chr4 (147-187)||(6258155-6258195)
chr4 (148-192)||(13924793-13924837)
chr4 (148-204)||(34451429-34451485)
chr4 (148-192)||(42792775-42792819)
[»] chr3 (21 HSPs)
chr3 (69-144)||(8231641-8231716)
chr3 (150-191)||(29516554-29516595)
chr3 (146-191)||(53346501-53346546)
chr3 (147-191)||(54753576-54753620)
chr3 (148-190)||(18745376-18745418)
chr3 (148-190)||(20807937-20807979)
chr3 (148-190)||(47571945-47571987)
chr3 (153-190)||(33762694-33762731)
chr3 (153-190)||(54308458-54308495)
chr3 (160-192)||(9830584-9830616)
chr3 (148-192)||(15287567-15287611)
chr3 (147-203)||(53344734-53344790)
chr3 (148-187)||(55336-55375)
chr3 (148-195)||(47571196-47571243)
chr3 (148-195)||(49349676-49349723)
chr3 (147-190)||(52924439-52924482)
chr3 (148-190)||(4706962-4707004)
chr3 (148-190)||(20808613-20808655)
chr3 (148-190)||(49350276-49350318)
chr3 (148-193)||(17353802-17353847)
chr3 (148-192)||(31629341-31629385)
[»] chr7 (30 HSPs)
chr7 (148-192)||(42818557-42818601)
chr7 (68-147)||(10039910-10039989)
chr7 (148-190)||(3314955-3314997)
chr7 (146-192)||(7329072-7329118)
chr7 (148-186)||(30581276-30581314)
chr7 (74-144)||(32310802-32310872)
chr7 (152-190)||(36611555-36611593)
chr7 (148-189)||(3315470-3315511)
chr7 (147-192)||(46491692-46491737)
chr7 (148-192)||(767136-767180)
chr7 (148-192)||(34807928-34807972)
chr7 (148-192)||(41965781-41965825)
chr7 (147-190)||(2403447-2403490)
chr7 (147-190)||(44120357-44120400)
chr7 (148-190)||(17114145-17114187)
chr7 (74-144)||(38237444-38237514)
chr7 (153-190)||(1511852-1511889)
chr7 (68-129)||(4094251-4094312)
chr7 (75-120)||(6099958-6100003)
chr7 (153-186)||(10590978-10591011)
chr7 (147-192)||(24874582-24874627)
chr7 (147-192)||(28007156-28007201)
chr7 (147-192)||(42817797-42817842)
chr7 (160-192)||(767970-768002)
chr7 (153-205)||(10590303-10590355)
chr7 (68-144)||(14774406-14774482)
chr7 (68-144)||(15224859-15224935)
chr7 (68-96)||(24862546-24862574)
chr7 (148-192)||(36611498-36611542)
chr7 (153-197)||(44876933-44876977)
[»] chr2 (16 HSPs)
chr2 (147-190)||(20606927-20606970)
chr2 (147-197)||(127734-127784)
chr2 (68-142)||(12599561-12599635)
chr2 (149-187)||(44297423-44297461)
chr2 (148-193)||(18537496-18537541)
chr2 (148-197)||(44296860-44296909)
chr2 (68-144)||(3752432-3752508)
chr2 (148-192)||(30201992-30202036)
chr2 (68-147)||(38502282-38502362)
chr2 (149-192)||(38138731-38138774)
chr2 (148-195)||(44986812-44986859)
chr2 (68-125)||(20170515-20170572)
chr2 (148-204)||(127033-127089)
chr2 (148-192)||(1141300-1141344)
chr2 (148-192)||(7754971-7755015)
chr2 (153-189)||(23458631-23458667)
[»] chr8 (24 HSPs)
chr8 (146-196)||(202575-202625)
chr8 (146-196)||(317412-317462)
chr8 (140-187)||(42094753-42094800)
chr8 (141-192)||(42664001-42664052)
chr8 (148-190)||(36182127-36182169)
chr8 (147-192)||(9929199-9929244)
chr8 (147-192)||(22632972-22633017)
chr8 (146-195)||(42094007-42094056)
chr8 (150-190)||(36180689-36180729)
chr8 (75-134)||(15172362-15172421)
chr8 (153-192)||(22632327-22632366)
chr8 (147-190)||(26847096-26847139)
chr8 (148-190)||(4402293-4402335)
chr8 (69-147)||(11420375-11420453)
chr8 (158-192)||(16718381-16718415)
chr8 (148-190)||(16911052-16911094)
chr8 (68-126)||(34142882-34142940)
chr8 (87-144)||(2442283-2442340)
chr8 (148-189)||(19220913-19220954)
chr8 (148-192)||(5434032-5434076)
chr8 (148-192)||(27243446-27243490)
chr8 (148-192)||(27255021-27255065)
chr8 (153-185)||(33321502-33321534)
chr8 (147-187)||(44656326-44656366)
[»] chr5 (16 HSPs)
chr5 (147-192)||(39466884-39466929)
chr5 (146-197)||(2029046-2029097)
chr5 (147-186)||(39936254-39936293)
chr5 (142-192)||(35524116-35524166)
chr5 (153-189)||(8743108-8743144)
chr5 (148-192)||(24565573-24565617)
chr5 (148-192)||(24606609-24606653)
chr5 (148-192)||(39937910-39937954)
chr5 (148-192)||(40372164-40372208)
chr5 (74-129)||(4353017-4353072)
chr5 (148-187)||(27345928-27345967)
chr5 (149-192)||(39467643-39467686)
chr5 (148-190)||(23253492-23253534)
chr5 (148-190)||(38129126-38129168)
chr5 (82-147)||(35695295-35695360)
chr5 (68-128)||(42638898-42638957)
[»] chr1 (22 HSPs)
chr1 (147-192)||(26240875-26240920)
chr1 (148-196)||(16449555-16449603)
chr1 (148-196)||(16459129-16459177)
chr1 (147-187)||(27745555-27745595)
chr1 (147-205)||(21257908-21257966)
chr1 (74-144)||(35112429-35112499)
chr1 (146-190)||(24848432-24848476)
chr1 (68-147)||(9848388-9848467)
chr1 (147-190)||(26240113-26240156)
chr1 (154-185)||(42345867-42345898)
chr1 (144-186)||(2261553-2261595)
chr1 (148-190)||(24847783-24847825)
chr1 (75-129)||(43115248-43115302)
chr1 (160-197)||(12449311-12449348)
chr1 (153-189)||(2260858-2260894)
chr1 (153-189)||(14166914-14166950)
chr1 (148-192)||(27746162-27746206)
chr1 (148-192)||(31109239-31109283)
chr1 (148-192)||(31116688-31116732)
chr1 (68-144)||(31239101-31239177)
chr1 (148-204)||(33357721-33357777)
chr1 (148-192)||(50657145-50657189)
[»] chr6 (14 HSPs)
chr6 (146-192)||(2138475-2138521)
chr6 (68-134)||(13708001-13708067)
chr6 (68-134)||(13710089-13710155)
chr6 (68-134)||(13712177-13712243)
chr6 (68-134)||(13715492-13715558)
chr6 (68-134)||(13717580-13717646)
chr6 (147-191)||(5312240-5312284)
chr6 (147-190)||(13084885-13084928)
chr6 (148-190)||(2741405-2741447)
chr6 (68-144)||(4577967-4578044)
chr6 (68-144)||(16436872-16436948)
chr6 (148-192)||(16718998-16719042)
chr6 (148-184)||(19405085-19405121)
chr6 (68-144)||(29178431-29178507)
[»] scaffold0627 (1 HSPs)
scaffold0627 (154-192)||(6470-6508)
[»] scaffold0002 (1 HSPs)
scaffold0002 (150-186)||(97206-97242)


Alignment Details
Target: chr4 (Bit Score: 45; Significance: 8e-17; HSPs: 24)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 149 - 205
Target Start/End: Original strand, 47156634 - 47156690
Alignment:
Q  149 gtgaattctaaggtgagggttcaattaagtccctcaccggtggagcacacaaaaaac 205  Q
    |||||||||| ||||||||||||||||||||||||| ||||||||||| ||||||||    
T  47156634 gtgaattctagggtgagggttcaattaagtccctcatcggtggagcacccaaaaaac 47156690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 142 - 196
Target Start/End: Original strand, 34450809 - 34450863
Alignment:
Q  142 tttgaaggtgaattctaaggtgagggttcaattaagtccctcaccggtggagcac 196  Q
    |||| |||||||||||| |||||||| ||||||||||||||||||||||||||||    
T  34450809 tttgtaggtgaattctagggtgagggatcaattaagtccctcaccggtggagcac 34450863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 148 - 196
Target Start/End: Complemental strand, 47157427 - 47157379
Alignment:
Q  148 ggtgaattctaaggtgagggttcaattaagtccctcaccggtggagcac 196  Q
    ||||||||||| ||||||||||||||||| |||||||||||||||||||    
T  47157427 ggtgaattctagggtgagggttcaattaaatccctcaccggtggagcac 47157379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 148 - 194
Target Start/End: Original strand, 52129421 - 52129467
Alignment:
Q  148 ggtgaattctaaggtgagggttcaattaagtccctcaccggtggagc 194  Q
    |||| ||||||||||||||||||||||||||||||||| ||||||||    
T  52129421 ggtggattctaaggtgagggttcaattaagtccctcactggtggagc 52129467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 68 - 143
Target Start/End: Complemental strand, 26067363 - 26067288
Alignment:
Q  68 atattataacaaattatacttatctttttaaatgaagccaatgatatagcaaatataatatatattcatatctttt 143  Q
    ||||| ||||||| ||| ||||||||||| |||||  |||| |||||| ||||||||||||| |||||||| ||||    
T  26067363 atattgtaacaaactattcttatctttttcaatgacaccaacgatataacaaatataatataaattcatatatttt 26067288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 147 - 192
Target Start/End: Complemental strand, 26764346 - 26764301
Alignment:
Q  147 aggtgaattctaaggtgagggttcaattaagtccctcaccggtgga 192  Q
    |||||||||||||||||||||||| || || |||||||||||||||    
T  26764346 aggtgaattctaaggtgagggttctatcaaatccctcaccggtgga 26764301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 146 - 190
Target Start/End: Complemental strand, 14527626 - 14527582
Alignment:
Q  146 aaggtgaattctaaggtgagggttcaattaagtccctcaccggtg 190  Q
    |||||| |||||| |||||||| ||||||||||||||||||||||    
T  14527626 aaggtggattctagggtgagggatcaattaagtccctcaccggtg 14527582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 148 - 192
Target Start/End: Original strand, 36248399 - 36248443
Alignment:
Q  148 ggtgaattctaaggtgagggttcaattaagtccctcaccggtgga 192  Q
    ||||||||||||||||||||  ||||||| |||||||||||||||    
T  36248399 ggtgaattctaaggtgagggagcaattaaatccctcaccggtgga 36248443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 68 - 128
Target Start/End: Original strand, 46250823 - 46250883
Alignment:
Q  68 atattataacaaattatacttatctttttaaatgaagccaatgatatagcaaatataatat 128  Q
    ||||| ||||||||||||||||||||||| |||||  ||||  ||||| ||||||||||||    
T  46250823 atattgtaacaaattatacttatctttttcaatgataccaacaatataacaaatataatat 46250883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 146 - 197
Target Start/End: Complemental strand, 13925699 - 13925648
Alignment:
Q  146 aaggtgaattctaaggtgagggttcaattaagtccctcaccggtggagcaca 197  Q
    |||||| ||||||| ||||||| |||| ||||||||||||||||||| ||||    
T  13925699 aaggtggattctaaagtgagggatcaactaagtccctcaccggtggaccaca 13925648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 153 - 192
Target Start/End: Complemental strand, 18363696 - 18363657
Alignment:
Q  153 attctaaggtgagggttcaattaagtccctcaccggtgga 192  Q
    |||||| ||||||||||||||||||| |||||||||||||    
T  18363696 attctagggtgagggttcaattaagttcctcaccggtgga 18363657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 153 - 192
Target Start/End: Original strand, 36599232 - 36599271
Alignment:
Q  153 attctaaggtgagggttcaattaagtccctcaccggtgga 192  Q
    |||||| ||||||||||||||||||| |||||||||||||    
T  36599232 attctagggtgagggttcaattaagttcctcaccggtgga 36599271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 148 - 190
Target Start/End: Original strand, 24666129 - 24666171
Alignment:
Q  148 ggtgaattctaaggtgagggttcaattaagtccctcaccggtg 190  Q
    |||| |||||| |||||||| ||||||||||||||||||||||    
T  24666129 ggtggattctagggtgagggatcaattaagtccctcaccggtg 24666171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 154 - 192
Target Start/End: Complemental strand, 26354274 - 26354236
Alignment:
Q  154 ttctaaggtgagggttcaattaagtccctcaccggtgga 192  Q
    ||||| |||||||||||||||||||||||||| ||||||    
T  26354274 ttctagggtgagggttcaattaagtccctcacaggtgga 26354236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 147 - 185
Target Start/End: Original strand, 34941501 - 34941539
Alignment:
Q  147 aggtgaattctaaggtgagggttcaattaagtccctcac 185  Q
    ||||| |||||| ||||||||||||||||||||||||||    
T  34941501 aggtggattctagggtgagggttcaattaagtccctcac 34941539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 153 - 187
Target Start/End: Original strand, 36253492 - 36253526
Alignment:
Q  153 attctaaggtgagggttcaattaagtccctcaccg 187  Q
    |||||||||||||||||| ||||||||||||||||    
T  36253492 attctaaggtgagggttctattaagtccctcaccg 36253526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 68 - 129
Target Start/End: Complemental strand, 24916133 - 24916072
Alignment:
Q  68 atattataacaaattatacttatctttttaaatgaagccaatgatatagcaaatataatata 129  Q
    ||||| ||||||||||||||||||||||| ||| |   |||| ||||| |||||||||||||    
T  24916133 atattgtaacaaattatacttatctttttcaataacaacaataatataacaaatataatata 24916072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 78 - 147
Target Start/End: Original strand, 28715371 - 28715440
Alignment:
Q  78 aaattatacttatctttttaaatgaagccaatgatatagcaaatataatatatattcatatctttttgaa 147  Q
    ||||||||||||| ||||| |||||  ||||  ||||||||||| ||||||| |||| ||||| ||||||    
T  28715371 aaattatacttatttttttcaatgacaccaacaatatagcaaatgtaatataaattcttatctgtttgaa 28715440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 87 - 147
Target Start/End: Original strand, 4608653 - 4608713
Alignment:
Q  87 ttatctttttaaatgaagccaatgatatagcaaatataatatatattcatatctttttgaa 147  Q
    |||| |||||||||||  ||||  ||||| ||||||||||||| |||| ||||||||||||    
T  4608653 ttatatttttaaatgacaccaacaatataacaaatataatataaattcttatctttttgaa 4608713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 148 - 192
Target Start/End: Complemental strand, 6057047 - 6057003
Alignment:
Q  148 ggtgaattctaaggtgagggttcaattaagtccctcaccggtgga 192  Q
    |||| |||||| ||||||||||| | |||||||||||||||||||    
T  6057047 ggtggattctagggtgagggttctactaagtccctcaccggtgga 6057003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 147 - 187
Target Start/End: Complemental strand, 6258195 - 6258155
Alignment:
Q  147 aggtgaattctaaggtgagggttcaattaagtccctcaccg 187  Q
    ||||| |||||||||||||||  ||||||||||||||||||    
T  6258195 aggtggattctaaggtgagggagcaattaagtccctcaccg 6258155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 148 - 192
Target Start/End: Original strand, 13924793 - 13924837
Alignment:
Q  148 ggtgaattctaaggtgagggttcaattaagtccctcaccggtgga 192  Q
    |||| |||||| |||||||| |||||||| |||||||||||||||    
T  13924793 ggtggattctagggtgagggctcaattaaatccctcaccggtgga 13924837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 148 - 204
Target Start/End: Complemental strand, 34451485 - 34451429
Alignment:
Q  148 ggtgaattctaaggtgagggttcaattaagtccctcaccggtggagcacacaaaaaa 204  Q
    |||| |||||| |||||||| |||||||||| ||||||||||| |||| | ||||||    
T  34451485 ggtggattctagggtgagggatcaattaagtacctcaccggtgaagcatataaaaaa 34451429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 148 - 192
Target Start/End: Original strand, 42792775 - 42792819
Alignment:
Q  148 ggtgaattctaaggtgagggttcaattaagtccctcaccggtgga 192  Q
    |||| |||||| ||||||||| |||||||||||||||||| ||||    
T  42792775 ggtggattctagggtgagggtccaattaagtccctcaccgatgga 42792819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 44; Significance: 3e-16; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 69 - 144
Target Start/End: Original strand, 8231641 - 8231716
Alignment:
Q  69 tattataacaaattatacttatctttttaaatgaagccaatgatatagcaaatataatatatattcatatcttttt 144  Q
    |||||||||||||||||||||||||||| |||||| ||||  | |||| |||||||||||| |||| |||||||||    
T  8231641 tattataacaaattatacttatctttttcaatgaaaccaacaaaatagaaaatataatataaattcttatcttttt 8231716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 150 - 191
Target Start/End: Complemental strand, 29516595 - 29516554
Alignment:
Q  150 tgaattctaaggtgagggttcaattaagtccctcaccggtgg 191  Q
    ||||||||| ||||||||||||||||||||||||||||||||    
T  29516595 tgaattctacggtgagggttcaattaagtccctcaccggtgg 29516554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 146 - 191
Target Start/End: Complemental strand, 53346546 - 53346501
Alignment:
Q  146 aaggtgaattctaaggtgagggttcaattaagtccctcaccggtgg 191  Q
    |||||||||||||  |||||||||||||||||||||||||||||||    
T  53346546 aaggtgaattctacagtgagggttcaattaagtccctcaccggtgg 53346501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 147 - 191
Target Start/End: Original strand, 54753576 - 54753620
Alignment:
Q  147 aggtgaattctaaggtgagggttcaattaagtccctcaccggtgg 191  Q
    |||||||||||| ||||||||||||||||||||||||||| ||||    
T  54753576 aggtgaattctacggtgagggttcaattaagtccctcaccagtgg 54753620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 148 - 190
Target Start/End: Complemental strand, 18745418 - 18745376
Alignment:
Q  148 ggtgaattctaaggtgagggttcaattaagtccctcaccggtg 190  Q
    ||||||||||| |||||||||||||| ||||||||||||||||    
T  18745418 ggtgaattctagggtgagggttcaatcaagtccctcaccggtg 18745376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 148 - 190
Target Start/End: Original strand, 20807937 - 20807979
Alignment:
Q  148 ggtgaattctaaggtgagggttcaattaagtccctcaccggtg 190  Q
    |||| |||||| |||||||||||||||||||||||||||||||    
T  20807937 ggtggattctagggtgagggttcaattaagtccctcaccggtg 20807979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 148 - 190
Target Start/End: Complemental strand, 47571987 - 47571945
Alignment:
Q  148 ggtgaattctaaggtgagggttcaattaagtccctcaccggtg 190  Q
    ||||||||||| |||||||| ||||||||||||||||||||||    
T  47571987 ggtgaattctagggtgagggatcaattaagtccctcaccggtg 47571945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 153 - 190
Target Start/End: Complemental strand, 33762731 - 33762694
Alignment:
Q  153 attctaaggtgagggttcaattaagtccctcaccggtg 190  Q
    |||||||||||||||||| |||||||||||||||||||    
T  33762731 attctaaggtgagggttctattaagtccctcaccggtg 33762694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 153 - 190
Target Start/End: Original strand, 54308458 - 54308495
Alignment:
Q  153 attctaaggtgagggttcaattaagtccctcaccggtg 190  Q
    |||||| |||||||||||||||||||||||||||||||    
T  54308458 attctagggtgagggttcaattaagtccctcaccggtg 54308495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 160 - 192
Target Start/End: Original strand, 9830584 - 9830616
Alignment:
Q  160 ggtgagggttcaattaagtccctcaccggtgga 192  Q
    |||||||||||||||||||||||||||||||||    
T  9830584 ggtgagggttcaattaagtccctcaccggtgga 9830616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 148 - 192
Target Start/End: Original strand, 15287567 - 15287611
Alignment:
Q  148 ggtgaattctaaggtgagggttcaattaagtccctcaccggtgga 192  Q
    |||| |||||| ||||||||| |||||||||||||||||||||||    
T  15287567 ggtggattctagggtgagggtccaattaagtccctcaccggtgga 15287611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 147 - 203
Target Start/End: Complemental strand, 53344790 - 53344734
Alignment:
Q  147 aggtgaattctaaggtgagggttcaattaagtccctcaccggtggagcacacaaaaa 203  Q
    ||||| |||||| |||||||| ||||| |||||||||||||||| |||||| |||||    
T  53344790 aggtggattctagggtgagggatcaatcaagtccctcaccggtgaagcacataaaaa 53344734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 148 - 187
Target Start/End: Complemental strand, 55375 - 55336
Alignment:
Q  148 ggtgaattctaaggtgagggttcaattaagtccctcaccg 187  Q
    ||||||||||| | ||||||||||||||||||||||||||    
T  55375 ggtgaattctaggatgagggttcaattaagtccctcaccg 55336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 148 - 195
Target Start/End: Original strand, 47571196 - 47571243
Alignment:
Q  148 ggtgaattctaaggtgagggttcaattaagtccctcaccggtggagca 195  Q
    |||| |||||| |||||||| |||||||||||||||||||||| ||||    
T  47571196 ggtggattctagggtgagggatcaattaagtccctcaccggtgaagca 47571243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 148 - 195
Target Start/End: Original strand, 49349676 - 49349723
Alignment:
Q  148 ggtgaattctaaggtgagggttcaattaagtccctcaccggtggagca 195  Q
    |||| |||||| |||||||| |||||||||||||||||||||| ||||    
T  49349676 ggtggattctagggtgagggatcaattaagtccctcaccggtgaagca 49349723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 147 - 190
Target Start/End: Complemental strand, 52924482 - 52924439
Alignment:
Q  147 aggtgaattctaaggtgagggttcaattaagtccctcaccggtg 190  Q
    ||||| |||||||||||||||  |||||||||||||||||||||    
T  52924482 aggtggattctaaggtgagggagcaattaagtccctcaccggtg 52924439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 148 - 190
Target Start/End: Complemental strand, 4707004 - 4706962
Alignment:
Q  148 ggtgaattctaaggtgagggttcaattaagtccctcaccggtg 190  Q
    |||| |||||| ||||||||||| |||||||||||||||||||    
T  4707004 ggtggattctagggtgagggttctattaagtccctcaccggtg 4706962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 148 - 190
Target Start/End: Complemental strand, 20808655 - 20808613
Alignment:
Q  148 ggtgaattctaaggtgagggttcaattaagtccctcaccggtg 190  Q
    |||| |||||| ||||||||||||| |||||||||||||||||    
T  20808655 ggtggattctagggtgagggttcaagtaagtccctcaccggtg 20808613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 148 - 190
Target Start/End: Complemental strand, 49350318 - 49350276
Alignment:
Q  148 ggtgaattctaaggtgagggttcaattaagtccctcaccggtg 190  Q
    |||| |||||| |||||||||||||||||||||||| ||||||    
T  49350318 ggtggattctagggtgagggttcaattaagtccctcgccggtg 49350276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 148 - 193
Target Start/End: Original strand, 17353802 - 17353847
Alignment:
Q  148 ggtgaattctaaggtgagggttcaattaagtccctcaccggtggag 193  Q
    |||||||||||  ||||||||||||||||||||| ||||| |||||    
T  17353802 ggtgaattctagtgtgagggttcaattaagtcccacaccgatggag 17353847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 148 - 192
Target Start/End: Original strand, 31629341 - 31629385
Alignment:
Q  148 ggtgaattctaaggtgagggttcaattaagtccctcaccggtgga 192  Q
    |||||||| ||||||||| |||||||||||| ||||||| |||||    
T  31629341 ggtgaattttaaggtgagtgttcaattaagttcctcaccagtgga 31629385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 30)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 148 - 192
Target Start/End: Complemental strand, 42818601 - 42818557
Alignment:
Q  148 ggtgaattctaaggtgagggttcaattaagtccctcaccggtgga 192  Q
    ||||||||||| |||||||||||||||||||||||||||||||||    
T  42818601 ggtgaattctagggtgagggttcaattaagtccctcaccggtgga 42818557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 68 - 147
Target Start/End: Original strand, 10039910 - 10039989
Alignment:
Q  68 atattataacaaattatacttatctttttaaatgaagccaatgatatagcaaatataatatatattcatatctttttgaa 147  Q
    ||||| |||||||||||| |||||||||| |||||  ||||  ||||||||||||||||||| |||  ||||||||||||    
T  10039910 atattgtaacaaattatatttatctttttcaatgacaccaacaatatagcaaatataatataaattattatctttttgaa 10039989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 148 - 190
Target Start/End: Original strand, 3314955 - 3314997
Alignment:
Q  148 ggtgaattctaaggtgagggttcaattaagtccctcaccggtg 190  Q
    |||| |||||| |||||||||||||||||||||||||||||||    
T  3314955 ggtggattctacggtgagggttcaattaagtccctcaccggtg 3314997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 146 - 192
Target Start/End: Complemental strand, 7329118 - 7329072
Alignment:
Q  146 aaggtgaattctaaggtgagggttcaattaagtccctcaccggtgga 192  Q
    ||||||| ||||| |||||||||||||||||||||||||| ||||||    
T  7329118 aaggtgacttctagggtgagggttcaattaagtccctcactggtgga 7329072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 148 - 186
Target Start/End: Complemental strand, 30581314 - 30581276
Alignment:
Q  148 ggtgaattctaaggtgagggttcaattaagtccctcacc 186  Q
    ||||||||||| |||||||||||||||||||||||||||    
T  30581314 ggtgaattctagggtgagggttcaattaagtccctcacc 30581276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 74 - 144
Target Start/End: Complemental strand, 32310872 - 32310802
Alignment:
Q  74 taacaaattatacttatctttttaaatgaagccaatgatatagcaaatataatatatattcatatcttttt 144  Q
    ||||||||||||||||||||||| ||||| | |||| |||||  |||||| ||||| |||| |||||||||    
T  32310872 taacaaattatacttatctttttcaatgatgtcaattatataaaaaatattatataaattcttatcttttt 32310802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 152 - 190
Target Start/End: Original strand, 36611555 - 36611593
Alignment:
Q  152 aattctaaggtgagggttcaattaagtccctcaccggtg 190  Q
    ||||||| |||||||||||||||||||||||||||||||    
T  36611555 aattctagggtgagggttcaattaagtccctcaccggtg 36611593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 148 - 189
Target Start/End: Complemental strand, 3315511 - 3315470
Alignment:
Q  148 ggtgaattctaaggtgagggttcaattaagtccctcaccggt 189  Q
    |||| ||||||||||||||| |||||||||||||||||||||    
T  3315511 ggtggattctaaggtgagggctcaattaagtccctcaccggt 3315470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 147 - 192
Target Start/End: Complemental strand, 46491737 - 46491692
Alignment:
Q  147 aggtgaattctaaggtgagggttcaattaagtccctcaccggtgga 192  Q
    ||||| |||||| ||||||||||||| |||||||||||||||||||    
T  46491737 aggtggattctagggtgagggttcaactaagtccctcaccggtgga 46491692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 148 - 192
Target Start/End: Original strand, 767136 - 767180
Alignment:
Q  148 ggtgaattctaaggtgagggttcaattaagtccctcaccggtgga 192  Q
    |||| |||||| ||||||||| |||||||||||||||||||||||    
T  767136 ggtggattctagggtgagggtccaattaagtccctcaccggtgga 767180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 148 - 192
Target Start/End: Original strand, 34807928 - 34807972
Alignment:
Q  148 ggtgaattctaaggtgagggttcaattaagtccctcaccggtgga 192  Q
    |||||| |||||||||||||  |||||||||||||||||||||||    
T  34807928 ggtgaagtctaaggtgagggagcaattaagtccctcaccggtgga 34807972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 148 - 192
Target Start/End: Complemental strand, 41965825 - 41965781
Alignment:
Q  148 ggtgaattctaaggtgagggttcaattaagtccctcaccggtgga 192  Q
    |||| |||||| ||||||||| |||||||||||||||||||||||    
T  41965825 ggtggattctagggtgagggtccaattaagtccctcaccggtgga 41965781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 147 - 190
Target Start/End: Complemental strand, 2403490 - 2403447
Alignment:
Q  147 aggtgaattctaaggtgagggttcaattaagtccctcaccggtg 190  Q
    |||||||||||| | ||||||||||| |||||||||||||||||    
T  2403490 aggtgaattctaggatgagggttcaactaagtccctcaccggtg 2403447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 147 - 190
Target Start/End: Original strand, 44120357 - 44120400
Alignment:
Q  147 aggtgaattctaaggtgagggttcaattaagtccctcaccggtg 190  Q
    ||||| |||||||||||||||  |||||||||||||||||||||    
T  44120357 aggtggattctaaggtgagggagcaattaagtccctcaccggtg 44120400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 148 - 190
Target Start/End: Original strand, 17114145 - 17114187
Alignment:
Q  148 ggtgaattctaaggtgagggttcaattaagtccctcaccggtg 190  Q
    |||| |||||| ||||||||||||||||||||||||| |||||    
T  17114145 ggtggattctagggtgagggttcaattaagtccctcatcggtg 17114187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 74 - 144
Target Start/End: Original strand, 38237444 - 38237514
Alignment:
Q  74 taacaaattatacttatctttttaaatgaagccaatgatatagcaaatataatatatattcatatcttttt 144  Q
    ||||||||||||||||| ||||| |||||  | ||  ||||| ||||||||||||| |||| |||||||||    
T  38237444 taacaaattatacttatttttttcaatgacacaaacaatataacaaatataatataaattcttatcttttt 38237514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 153 - 190
Target Start/End: Original strand, 1511852 - 1511889
Alignment:
Q  153 attctaaggtgagggttcaattaagtccctcaccggtg 190  Q
    |||||||||||| ||||| |||||||||||||||||||    
T  1511852 attctaaggtgatggttctattaagtccctcaccggtg 1511889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 68 - 129
Target Start/End: Original strand, 4094251 - 4094312
Alignment:
Q  68 atattataacaaattatacttatctttttaaatgaagccaatgatatagcaaatataatata 129  Q
    ||||| ||||||| ||||||||| ||||| || ||| |||| |||||| |||||||||||||    
T  4094251 atattgtaacaaactatacttatatttttcaaagaaaccaacgatataacaaatataatata 4094312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 75 - 120
Target Start/End: Original strand, 6099958 - 6100003
Alignment:
Q  75 aacaaattatacttatctttttaaatgaagccaatgatatagcaaa 120  Q
    |||||||||||||||||||||||||||   ||||| ||||||||||    
T  6099958 aacaaattatacttatctttttaaatgtcaccaataatatagcaaa 6100003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 153 - 186
Target Start/End: Complemental strand, 10591011 - 10590978
Alignment:
Q  153 attctaaggtgagggttcaattaagtccctcacc 186  Q
    |||||||||||||||||||||||| |||||||||    
T  10591011 attctaaggtgagggttcaattaactccctcacc 10590978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 147 - 192
Target Start/End: Complemental strand, 24874627 - 24874582
Alignment:
Q  147 aggtgaattctaaggtgagggttcaattaagtccctcaccggtgga 192  Q
    ||||| |||||| |||||||||||||||| |||||||| |||||||    
T  24874627 aggtggattctagggtgagggttcaattaggtccctcatcggtgga 24874582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 147 - 192
Target Start/End: Original strand, 28007156 - 28007201
Alignment:
Q  147 aggtgaattctaaggtgagggttcaattaagtccctcaccggtgga 192  Q
    ||||| |||||| ||||||||  |||||||||||||||||||||||    
T  28007156 aggtggattctagggtgagggagcaattaagtccctcaccggtgga 28007201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 147 - 192
Target Start/End: Original strand, 42817797 - 42817842
Alignment:
Q  147 aggtgaattctaaggtgagggttcaattaagtccctcaccggtgga 192  Q
    |||||||||||| ||||| ||| ||||||||||||||| |||||||    
T  42817797 aggtgaattctagggtgatggtccaattaagtccctcatcggtgga 42817842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 192
Target Start/End: Complemental strand, 768002 - 767970
Alignment:
Q  160 ggtgagggttcaattaagtccctcaccggtgga 192  Q
    ||||||||| |||||||||||||||||||||||    
T  768002 ggtgagggtccaattaagtccctcaccggtgga 767970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 153 - 205
Target Start/End: Original strand, 10590303 - 10590355
Alignment:
Q  153 attctaaggtgagggttcaattaagtccctcaccggtggagcacacaaaaaac 205  Q
    |||||| |||||| |||||||||||||||||| ||||| |||||  |||||||    
T  10590303 attctagggtgagagttcaattaagtccctcatcggtgaagcaccaaaaaaac 10590355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 68 - 144
Target Start/End: Original strand, 14774406 - 14774482
Alignment:
Q  68 atattataacaaattatacttatctttttaaatgaagccaatgatatagcaaatataatatatattcatatcttttt 144  Q
    ||||| ||||||||||||||||||||||| |||||   ||||   ||| ||||||| ||||| |||| |||||||||    
T  14774406 atattgtaacaaattatacttatctttttcaatgatatcaatagcataacaaatattatataaattcttatcttttt 14774482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 68 - 144
Target Start/End: Original strand, 15224859 - 15224935
Alignment:
Q  68 atattataacaaattatacttatctttttaaatgaagccaatgatatagcaaatataatatatattcatatcttttt 144  Q
    ||||| ||||||||||||||||||||||| |||||   ||||   ||| ||||||| ||||| |||| |||||||||    
T  15224859 atattgtaacaaattatacttatctttttcaatgatatcaatagcataacaaatattatataaattcttatcttttt 15224935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 68 - 96
Target Start/End: Complemental strand, 24862574 - 24862546
Alignment:
Q  68 atattataacaaattatacttatcttttt 96  Q
    |||||||||||||||||||||||||||||    
T  24862574 atattataacaaattatacttatcttttt 24862546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 148 - 192
Target Start/End: Complemental strand, 36611542 - 36611498
Alignment:
Q  148 ggtgaattctaaggtgagggttcaattaagtccctcaccggtgga 192  Q
    |||| |||||| ||||||||||||||||| || ||||||||||||    
T  36611542 ggtggattctagggtgagggttcaattaaatctctcaccggtgga 36611498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 153 - 197
Target Start/End: Complemental strand, 44876977 - 44876933
Alignment:
Q  153 attctaaggtgagggttcaattaagtccctcaccggtggagcaca 197  Q
    |||||| |||||||| ||||||||||||||||||| |||| ||||    
T  44876977 attctagggtgagggatcaattaagtccctcaccgatggaccaca 44876933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 147 - 190
Target Start/End: Complemental strand, 20606970 - 20606927
Alignment:
Q  147 aggtgaattctaaggtgagggttcaattaagtccctcaccggtg 190  Q
    |||||||||||| |||||||||||||||||||||||||||||||    
T  20606970 aggtgaattctagggtgagggttcaattaagtccctcaccggtg 20606927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 147 - 197
Target Start/End: Complemental strand, 127784 - 127734
Alignment:
Q  147 aggtgaattctaaggtgagggttcaattaagtccctcaccggtggagcaca 197  Q
    ||||| |||||| ||||||||||||||||||||| ||||||||| ||||||    
T  127784 aggtggattctagggtgagggttcaattaagtccttcaccggtgaagcaca 127734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 68 - 142
Target Start/End: Complemental strand, 12599635 - 12599561
Alignment:
Q  68 atattataacaaattatacttatctttttaaatgaagccaatgatatagcaaatataatatatattcatatcttt 142  Q
    ||||||||| |||||||| |||||||||| ||| |  ||||| ||||| ||||||||||||| |||| |||||||    
T  12599635 atattataataaattatatttatctttttcaattataccaataatataacaaatataatataaattcttatcttt 12599561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 149 - 187
Target Start/End: Complemental strand, 44297461 - 44297423
Alignment:
Q  149 gtgaattctaaggtgagggttcaattaagtccctcaccg 187  Q
    |||||||||| ||||||||||||||||||||||||||||    
T  44297461 gtgaattctagggtgagggttcaattaagtccctcaccg 44297423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 148 - 193
Target Start/End: Complemental strand, 18537541 - 18537496
Alignment:
Q  148 ggtgaattctaaggtgagggttcaattaagtccctcaccggtggag 193  Q
    |||| |||||| | ||||||||||||||||||||||||||||||||    
T  18537541 ggtggattctatgatgagggttcaattaagtccctcaccggtggag 18537496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 148 - 197
Target Start/End: Original strand, 44296860 - 44296909
Alignment:
Q  148 ggtgaattctaaggtgagggttcaattaagtccctcaccggtggagcaca 197  Q
    ||||||||||| ||||||||| |||||||||||||||| |||||| ||||    
T  44296860 ggtgaattctagggtgagggtccaattaagtccctcactggtggaccaca 44296909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 68 - 144
Target Start/End: Original strand, 3752432 - 3752508
Alignment:
Q  68 atattataacaaattatacttatctttttaaatgaagccaatgatatagcaaatataatatatattcatatcttttt 144  Q
    ||||| ||||||| |||| |||| ||||| ||||| ||| || ||||||||||| ||||||| |||| |||||||||    
T  3752432 atattgtaacaaactatatttatatttttcaatgaggccgataatatagcaaatgtaatataaattcttatcttttt 3752508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 148 - 192
Target Start/End: Complemental strand, 30202036 - 30201992
Alignment:
Q  148 ggtgaattctaaggtgagggttcaattaagtccctcaccggtgga 192  Q
    |||| |||||||||||||||  |||||||||||||||||||||||    
T  30202036 ggtggattctaaggtgagggagcaattaagtccctcaccggtgga 30201992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 68 - 147
Target Start/End: Complemental strand, 38502362 - 38502282
Alignment:
Q  68 atattataacaaattatacttatctttttaaatgaagccaatgatatagc-aaatataatatatattcatatctttttgaa 147  Q
    ||||| ||||||| ||||||||||||||| |||||  ||||  ||||| | |||||||||||| |||| ||||||||||||    
T  38502362 atattgtaacaaactatacttatctttttcaatgataccaacaatataacaaaatataatataaattcttatctttttgaa 38502282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 149 - 192
Target Start/End: Complemental strand, 38138774 - 38138731
Alignment:
Q  149 gtgaattctaaggtgagggttcaattaagtccctcaccggtgga 192  Q
    ||||||| |||||||||| |||||||||||||||||| ||||||    
T  38138774 gtgaattttaaggtgaggattcaattaagtccctcactggtgga 38138731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 148 - 195
Target Start/End: Original strand, 44986812 - 44986859
Alignment:
Q  148 ggtgaattctaaggtgagggttcaattaagtccctcaccggtggagca 195  Q
    ||||||||||| |||||||| |||||||||||||||| ||||| ||||    
T  44986812 ggtgaattctagggtgagggatcaattaagtccctcatcggtgaagca 44986859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 68 - 125
Target Start/End: Original strand, 20170515 - 20170572
Alignment:
Q  68 atattataacaaattatacttatctttttaaatgaagccaatgatatagcaaatataa 125  Q
    ||||| ||||||||||||||||||||||| |||||   |||| ||||| |||||||||    
T  20170515 atattgtaacaaattatacttatctttttcaatgatatcaataatataacaaatataa 20170572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 148 - 204
Target Start/End: Original strand, 127033 - 127089
Alignment:
Q  148 ggtgaattctaaggtgagggttcaattaagtccctcaccggtggagcacacaaaaaa 204  Q
    |||| |||||| ||||||||||||| ||||||||||| | ||||| |||| ||||||    
T  127033 ggtggattctagggtgagggttcaactaagtccctcatcagtggaccacaaaaaaaa 127089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 148 - 192
Target Start/End: Original strand, 1141300 - 1141344
Alignment:
Q  148 ggtgaattctaaggtgagggttcaattaagtccctcaccggtgga 192  Q
    |||| |||||||||||||||  |||| ||||||||||||||||||    
T  1141300 ggtggattctaaggtgagggagcaatgaagtccctcaccggtgga 1141344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 148 - 192
Target Start/End: Complemental strand, 7755015 - 7754971
Alignment:
Q  148 ggtgaattctaaggtgagggttcaattaagtccctcaccggtgga 192  Q
    |||| |||||| |||||||| |||||||||||| |||||||||||    
T  7755015 ggtggattctagggtgagggatcaattaagtccttcaccggtgga 7754971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 153 - 189
Target Start/End: Complemental strand, 23458667 - 23458631
Alignment:
Q  153 attctaaggtgagggttcaattaagtccctcaccggt 189  Q
    |||||| |||||||||| |||||||||||||||||||    
T  23458667 attctacggtgagggtttaattaagtccctcaccggt 23458631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 24)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 146 - 196
Target Start/End: Original strand, 202575 - 202625
Alignment:
Q  146 aaggtgaattctaaggtgagggttcaattaagtccctcaccggtggagcac 196  Q
    ||||||||||||| | ||||||||||||||||||||||||||||| |||||    
T  202575 aaggtgaattctaggatgagggttcaattaagtccctcaccggtgaagcac 202625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 146 - 196
Target Start/End: Original strand, 317412 - 317462
Alignment:
Q  146 aaggtgaattctaaggtgagggttcaattaagtccctcaccggtggagcac 196  Q
    ||||||||||||| | ||||||||||||||||||||||||||||| |||||    
T  317412 aaggtgaattctaggatgagggttcaattaagtccctcaccggtgaagcac 317462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 140 - 187
Target Start/End: Complemental strand, 42094800 - 42094753
Alignment:
Q  140 tttttgaaggtgaattctaaggtgagggttcaattaagtccctcaccg 187  Q
    ||||| ||||||||||||| |||||||| |||||||||||||||||||    
T  42094800 ttttttaaggtgaattctagggtgagggatcaattaagtccctcaccg 42094753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 141 - 192
Target Start/End: Complemental strand, 42664052 - 42664001
Alignment:
Q  141 ttttgaaggtgaattctaaggtgagggttcaattaagtccctcaccggtgga 192  Q
    |||| |||||||||| || |||||||||||||||||||||||||| ||||||    
T  42664052 tttttaaggtgaattttagggtgagggttcaattaagtccctcactggtgga 42664001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 148 - 190
Target Start/End: Complemental strand, 36182169 - 36182127
Alignment:
Q  148 ggtgaattctaaggtgagggttcaattaagtccctcaccggtg 190  Q
    ||||||||||| || ||||||||||||||||||||||||||||    
T  36182169 ggtgaattctatggcgagggttcaattaagtccctcaccggtg 36182127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 147 - 192
Target Start/End: Original strand, 9929199 - 9929244
Alignment:
Q  147 aggtgaattctaaggtgagggttcaattaagtccctcaccggtgga 192  Q
    ||||||||||||||||||||| || | |||||||||||||||||||    
T  9929199 aggtgaattctaaggtgagggctctactaagtccctcaccggtgga 9929244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 147 - 192
Target Start/End: Complemental strand, 22633017 - 22632972
Alignment:
Q  147 aggtgaattctaaggtgagggttcaattaagtccctcaccggtgga 192  Q
    ||||| |||||| |||||||| ||||||||||||||||||||||||    
T  22633017 aggtggattctagggtgagggatcaattaagtccctcaccggtgga 22632972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 146 - 195
Target Start/End: Original strand, 42094007 - 42094056
Alignment:
Q  146 aaggtgaattctaaggtgagggttcaattaagtccctcaccggtggagca 195  Q
    |||||| |||||| |||||||| |||||||||||||||||||||| ||||    
T  42094007 aaggtggattctagggtgagggatcaattaagtccctcaccggtgaagca 42094056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 150 - 190
Target Start/End: Original strand, 36180689 - 36180729
Alignment:
Q  150 tgaattctaaggtgagggttcaattaagtccctcaccggtg 190  Q
    ||||||||| |||||||||| ||||||||||||||||||||    
T  36180689 tgaattctagggtgagggtttaattaagtccctcaccggtg 36180729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 75 - 134
Target Start/End: Original strand, 15172362 - 15172421
Alignment:
Q  75 aacaaattatacttatctttttaaatgaagccaatgatatagcaaatataatatatattc 134  Q
    |||||||||| ||||||||||| |||||  ||||  ||||||||||||||||||| ||||    
T  15172362 aacaaattattcttatctttttcaatgacaccaacaatatagcaaatataatataaattc 15172421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 153 - 192
Target Start/End: Original strand, 22632327 - 22632366
Alignment:
Q  153 attctaaggtgagggttcaattaagtccctcaccggtgga 192  Q
    |||||| |||||||| ||||||||||||||||||||||||    
T  22632327 attctagggtgagggatcaattaagtccctcaccggtgga 22632366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 147 - 190
Target Start/End: Original strand, 26847096 - 26847139
Alignment:
Q  147 aggtgaattctaaggtgagggttcaattaagtccctcaccggtg 190  Q
    ||||| |||||| ||||||||| |||||||||||||||||||||    
T  26847096 aggtggattctagggtgagggtccaattaagtccctcaccggtg 26847139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 148 - 190
Target Start/End: Complemental strand, 4402335 - 4402293
Alignment:
Q  148 ggtgaattctaaggtgagggttcaattaagtccctcaccggtg 190  Q
    |||| |||||| ||||||||||| |||||||||||||||||||    
T  4402335 ggtggattctagggtgagggttctattaagtccctcaccggtg 4402293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 69 - 147
Target Start/End: Original strand, 11420375 - 11420453
Alignment:
Q  69 tattataacaaattatacttatctttttaaatgaagccaatgatatagcaaatataatatatattcatatctttttgaa 147  Q
    |||| |||||||| || | ||||||||| |||||  ||||  ||||| ||||||||||||| |||| ||||||||||||    
T  11420375 tattgtaacaaatcattcatatctttttcaatgataccaacaatataacaaatataatataaattcttatctttttgaa 11420453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 158 - 192
Target Start/End: Complemental strand, 16718415 - 16718381
Alignment:
Q  158 aaggtgagggttcaattaagtccctcaccggtgga 192  Q
    |||||||||| ||||||||||||||||||||||||    
T  16718415 aaggtgagggctcaattaagtccctcaccggtgga 16718381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 148 - 190
Target Start/End: Complemental strand, 16911094 - 16911052
Alignment:
Q  148 ggtgaattctaaggtgagggttcaattaagtccctcaccggtg 190  Q
    |||| |||||| |||||||| ||||||||||||||||||||||    
T  16911094 ggtggattctagggtgagggctcaattaagtccctcaccggtg 16911052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 68 - 126
Target Start/End: Original strand, 34142882 - 34142940
Alignment:
Q  68 atattataacaaattatacttatctttttaaatgaagccaatgatatagcaaatataat 126  Q
    ||||| ||||||| |||||||||||||||||||||  ||||  ||||| ||||||||||    
T  34142882 atattgtaacaaactatacttatctttttaaatgataccaacaatataacaaatataat 34142940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 87 - 144
Target Start/End: Complemental strand, 2442340 - 2442283
Alignment:
Q  87 ttatctttttaaatgaagccaatgatatagcaaatataatatatattcatatcttttt 144  Q
    |||||||||| |||||| ||||| ||||| ||||||||||||| |||  |||||||||    
T  2442340 ttatctttttcaatgaaaccaataatataacaaatataatataaatttttatcttttt 2442283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 148 - 189
Target Start/End: Original strand, 19220913 - 19220954
Alignment:
Q  148 ggtgaattctaaggtgagggttcaattaagtccctcaccggt 189  Q
    ||||||||||| | ||||||||||||||||||| ||||||||    
T  19220913 ggtgaattctaggatgagggttcaattaagtccgtcaccggt 19220954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 148 - 192
Target Start/End: Original strand, 5434032 - 5434076
Alignment:
Q  148 ggtgaattctaaggtgagggttcaattaagtccctcaccggtgga 192  Q
    |||| |||||| ||||||||| ||||||||||| |||||||||||    
T  5434032 ggtggattctagggtgagggtccaattaagtccttcaccggtgga 5434076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 148 - 192
Target Start/End: Original strand, 27243446 - 27243490
Alignment:
Q  148 ggtgaattctaaggtgagggttcaattaagtccctcaccggtgga 192  Q
    |||| ||| ||||| ||||| ||||||||||||||||||||||||    
T  27243446 ggtggattataaggcgagggatcaattaagtccctcaccggtgga 27243490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 148 - 192
Target Start/End: Original strand, 27255021 - 27255065
Alignment:
Q  148 ggtgaattctaaggtgagggttcaattaagtccctcaccggtgga 192  Q
    |||| ||| ||||| ||||| ||||||||||||||||||||||||    
T  27255021 ggtggattataaggcgagggatcaattaagtccctcaccggtgga 27255065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 153 - 185
Target Start/End: Original strand, 33321502 - 33321534
Alignment:
Q  153 attctaaggtgagggttcaattaagtccctcac 185  Q
    |||||||||||| ||||||||||||||||||||    
T  33321502 attctaaggtgatggttcaattaagtccctcac 33321534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 147 - 187
Target Start/End: Complemental strand, 44656366 - 44656326
Alignment:
Q  147 aggtgaattctaaggtgagggttcaattaagtccctcaccg 187  Q
    ||||| |||||||||||||||  ||||||||||||||||||    
T  44656366 aggtggattctaaggtgagggagcaattaagtccctcaccg 44656326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000001; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 147 - 192
Target Start/End: Original strand, 39466884 - 39466929
Alignment:
Q  147 aggtgaattctaaggtgagggttcaattaagtccctcaccggtgga 192  Q
    |||||||||||| ||||||||| |||||||||||||||||||||||    
T  39466884 aggtgaattctagggtgagggtccaattaagtccctcaccggtgga 39466929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 146 - 197
Target Start/End: Complemental strand, 2029097 - 2029046
Alignment:
Q  146 aaggtgaattctaaggtgagggttcaattaagtccctcaccggtggagcaca 197  Q
    |||||| |||||| |||||||| |||||||||||||||||||||| ||||||    
T  2029097 aaggtggattctagggtgagggctcaattaagtccctcaccggtgaagcaca 2029046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 147 - 186
Target Start/End: Original strand, 39936254 - 39936293
Alignment:
Q  147 aggtgaattctaaggtgagggttcaattaagtccctcacc 186  Q
    ||||| ||||||||||||||||||||||||||||||||||    
T  39936254 aggtggattctaaggtgagggttcaattaagtccctcacc 39936293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 142 - 192
Target Start/End: Original strand, 35524116 - 35524166
Alignment:
Q  142 tttgaaggtgaattctaaggtgagggttcaattaagtccctcaccggtgga 192  Q
    |||||||||| |||||| | |||| ||||||||||||||||||||||||||    
T  35524116 tttgaaggtggattctaggatgagagttcaattaagtccctcaccggtgga 35524166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 153 - 189
Target Start/End: Complemental strand, 8743144 - 8743108
Alignment:
Q  153 attctaaggtgagggttcaattaagtccctcaccggt 189  Q
    |||||||||||| ||||||||||||||||||||||||    
T  8743144 attctaaggtgaaggttcaattaagtccctcaccggt 8743108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 148 - 192
Target Start/End: Original strand, 24565573 - 24565617
Alignment:
Q  148 ggtgaattctaaggtgagggttcaattaagtccctcaccggtgga 192  Q
    |||| |||||| ||||||||||||||||| |||||||||||||||    
T  24565573 ggtggattctagggtgagggttcaattaaatccctcaccggtgga 24565617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 148 - 192
Target Start/End: Original strand, 24606609 - 24606653
Alignment:
Q  148 ggtgaattctaaggtgagggttcaattaagtccctcaccggtgga 192  Q
    |||| |||||| ||||||||||||||||| |||||||||||||||    
T  24606609 ggtggattctagggtgagggttcaattaaatccctcaccggtgga 24606653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 148 - 192
Target Start/End: Complemental strand, 39937954 - 39937910
Alignment:
Q  148 ggtgaattctaaggtgagggttcaattaagtccctcaccggtgga 192  Q
    |||| |||||| |||||||||||| ||||||||||||||||||||    
T  39937954 ggtggattctagggtgagggttcagttaagtccctcaccggtgga 39937910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 148 - 192
Target Start/End: Complemental strand, 40372208 - 40372164
Alignment:
Q  148 ggtgaattctaaggtgagggttcaattaagtccctcaccggtgga 192  Q
    |||| |||||| ||||||||||||||||||| |||||||||||||    
T  40372208 ggtggattctagggtgagggttcaattaagttcctcaccggtgga 40372164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 74 - 129
Target Start/End: Original strand, 4353017 - 4353072
Alignment:
Q  74 taacaaattatacttatctttttaaatgaagccaatgatatagcaaatataatata 129  Q
    ||||||||||||||||||||||| ||| |  ||||| ||||| |||||||||||||    
T  4353017 taacaaattatacttatctttttcaattacaccaataatataacaaatataatata 4353072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 148 - 187
Target Start/End: Complemental strand, 27345967 - 27345928
Alignment:
Q  148 ggtgaattctaaggtgagggttcaattaagtccctcaccg 187  Q
    |||| |||||| ||||||||||||||||||||||||||||    
T  27345967 ggtggattctagggtgagggttcaattaagtccctcaccg 27345928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 149 - 192
Target Start/End: Complemental strand, 39467686 - 39467643
Alignment:
Q  149 gtgaattctaaggtgagggttcaattaagtccctcaccggtgga 192  Q
    |||||||||| |||||||||| |||||||||||||| |||||||    
T  39467686 gtgaattctagggtgagggtttaattaagtccctcatcggtgga 39467643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 148 - 190
Target Start/End: Complemental strand, 23253534 - 23253492
Alignment:
Q  148 ggtgaattctaaggtgagggttcaattaagtccctcaccggtg 190  Q
    |||| |||||| ||||||||| |||||||||||||||||||||    
T  23253534 ggtggattctagggtgagggtccaattaagtccctcaccggtg 23253492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 148 - 190
Target Start/End: Original strand, 38129126 - 38129168
Alignment:
Q  148 ggtgaattctaaggtgagggttcaattaagtccctcaccggtg 190  Q
    |||| |||||||||||||||  |||||||||||||||||||||    
T  38129126 ggtggattctaaggtgagggagcaattaagtccctcaccggtg 38129168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 82 - 147
Target Start/End: Complemental strand, 35695360 - 35695295
Alignment:
Q  82 tatacttatctttttaaatgaagccaatgatatagcaaatataatatatattcatatctttttgaa 147  Q
    ||||||||||||||| |||||  ||||  ||||| || |||||||||| ||| |||||||||||||    
T  35695360 tatacttatctttttcaatgacaccaacaatataccacatataatataaatttatatctttttgaa 35695295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 68 - 128
Target Start/End: Complemental strand, 42638957 - 42638898
Alignment:
Q  68 atattataacaaattatacttatctttttaaatgaagccaatgatatagcaaatataatat 128  Q
    ||||| ||||||| |||| |||||||||| |||||  ||||||||||| ||||||||||||    
T  42638957 atattgtaacaaaatatatttatctttttcaatgataccaatgatata-caaatataatat 42638898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000001; HSPs: 22)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 147 - 192
Target Start/End: Complemental strand, 26240920 - 26240875
Alignment:
Q  147 aggtgaattctaaggtgagggttcaattaagtccctcaccggtgga 192  Q
    ||||| |||||| |||||||||||||||||||||||||||||||||    
T  26240920 aggtggattctagggtgagggttcaattaagtccctcaccggtgga 26240875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 148 - 196
Target Start/End: Original strand, 16449555 - 16449603
Alignment:
Q  148 ggtgaattctaaggtgagggttcaattaagtccctcaccggtggagcac 196  Q
    |||| |||||| ||||||||||||||||||||||||||||||| |||||    
T  16449555 ggtggattctagggtgagggttcaattaagtccctcaccggtgaagcac 16449603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 148 - 196
Target Start/End: Original strand, 16459129 - 16459177
Alignment:
Q  148 ggtgaattctaaggtgagggttcaattaagtccctcaccggtggagcac 196  Q
    |||| |||||| ||||||||||||||||||||||||||||||| |||||    
T  16459129 ggtggattctagggtgagggttcaattaagtccctcaccggtgaagcac 16459177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 147 - 187
Target Start/End: Original strand, 27745555 - 27745595
Alignment:
Q  147 aggtgaattctaaggtgagggttcaattaagtccctcaccg 187  Q
    ||||| |||||||||||||||||||||||||||||||||||    
T  27745555 aggtggattctaaggtgagggttcaattaagtccctcaccg 27745595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 147 - 205
Target Start/End: Complemental strand, 21257966 - 21257908
Alignment:
Q  147 aggtgaattctaaggtgagggttcaattaagtccctcaccggtggagcacacaaaaaac 205  Q
    ||||| |||||||||||||||||||||||||| ||||||| ||| |||||  |||||||    
T  21257966 aggtgcattctaaggtgagggttcaattaagttcctcaccagtgaagcaccaaaaaaac 21257908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 74 - 144
Target Start/End: Complemental strand, 35112499 - 35112429
Alignment:
Q  74 taacaaattatacttatctttttaaatgaagccaatgatatagcaaatataatatatattcatatcttttt 144  Q
    ||||||| ||||||||||||||| ||| |  | ||| ||||||||||||||||||| |||| |||||||||    
T  35112499 taacaaactatacttatctttttcaataacactaataatatagcaaatataatataaattcttatcttttt 35112429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 146 - 190
Target Start/End: Complemental strand, 24848476 - 24848432
Alignment:
Q  146 aaggtgaattctaaggtgagggttcaattaagtccctcaccggtg 190  Q
    |||||| |||||| ||||||||||| |||||||||||||||||||    
T  24848476 aaggtggattctagggtgagggttctattaagtccctcaccggtg 24848432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 68 - 147
Target Start/End: Complemental strand, 9848467 - 9848388
Alignment:
Q  68 atattataacaaattatacttatctttttaaatgaagccaatgatatagcaaatataatatatattcatatctttttgaa 147  Q
    ||||| ||| ||||||||||||| ||||| ||| | | |||||||||| |||||||| |||| |||| | ||||||||||    
T  9848467 atattgtaataaattatacttatttttttcaataatgtcaatgatataacaaatatattataaattcttttctttttgaa 9848388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 147 - 190
Target Start/End: Original strand, 26240113 - 26240156
Alignment:
Q  147 aggtgaattctaaggtgagggttcaattaagtccctcaccggtg 190  Q
    ||||| |||||| |||||||| ||||||||||||||||||||||    
T  26240113 aggtggattctagggtgagggatcaattaagtccctcaccggtg 26240156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 154 - 185
Target Start/End: Complemental strand, 42345898 - 42345867
Alignment:
Q  154 ttctaaggtgagggttcaattaagtccctcac 185  Q
    ||||||||||||||||||||||||||||||||    
T  42345898 ttctaaggtgagggttcaattaagtccctcac 42345867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 144 - 186
Target Start/End: Complemental strand, 2261595 - 2261553
Alignment:
Q  144 tgaaggtgaattctaaggtgagggttcaattaagtccctcacc 186  Q
    |||||||||||| || |||||||||||||||||| ||||||||    
T  2261595 tgaaggtgaattttagggtgagggttcaattaagcccctcacc 2261553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 148 - 190
Target Start/End: Original strand, 24847783 - 24847825
Alignment:
Q  148 ggtgaattctaaggtgagggttcaattaagtccctcaccggtg 190  Q
    |||| |||||| ||||||||||| |||||||||||||||||||    
T  24847783 ggtggattctagggtgagggttctattaagtccctcaccggtg 24847825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 75 - 129
Target Start/End: Complemental strand, 43115302 - 43115248
Alignment:
Q  75 aacaaattatacttatctttttaaatgaagccaatgatatagcaaatataatata 129  Q
    ||||||||||  |||||||||| |||||  |||||||||| ||||||||||||||    
T  43115302 aacaaattatgtttatcttttttaatgacaccaatgatattgcaaatataatata 43115248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 160 - 197
Target Start/End: Complemental strand, 12449348 - 12449311
Alignment:
Q  160 ggtgagggttcaattaagtccctcaccggtggagcaca 197  Q
    |||||||| |||||||||||||||||||||||| ||||    
T  12449348 ggtgagggatcaattaagtccctcaccggtggaccaca 12449311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 153 - 189
Target Start/End: Original strand, 2260858 - 2260894
Alignment:
Q  153 attctaaggtgagggttcaattaagtccctcaccggt 189  Q
    |||||| |||||||||||||| |||||||||||||||    
T  2260858 attctagggtgagggttcaatcaagtccctcaccggt 2260894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 153 - 189
Target Start/End: Complemental strand, 14166950 - 14166914
Alignment:
Q  153 attctaaggtgagggttcaattaagtccctcaccggt 189  Q
    |||||| |||||||| |||||||||||||||||||||    
T  14166950 attctagggtgagggctcaattaagtccctcaccggt 14166914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 148 - 192
Target Start/End: Complemental strand, 27746206 - 27746162
Alignment:
Q  148 ggtgaattctaaggtgagggttcaattaagtccctcaccggtgga 192  Q
    |||| ||||||  |||||||||||||||||||||||||| |||||    
T  27746206 ggtggattctagcgtgagggttcaattaagtccctcaccagtgga 27746162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 148 - 192
Target Start/End: Original strand, 31109239 - 31109283
Alignment:
Q  148 ggtgaattctaaggtgagggttcaattaagtccctcaccggtgga 192  Q
    |||| |||||| ||||||||| |||||| ||||||||||||||||    
T  31109239 ggtggattctagggtgagggtccaattaggtccctcaccggtgga 31109283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 148 - 192
Target Start/End: Complemental strand, 31116732 - 31116688
Alignment:
Q  148 ggtgaattctaaggtgagggttcaattaagtccctcaccggtgga 192  Q
    |||| |||||| ||||||||| |||||| ||||||||||||||||    
T  31116732 ggtggattctagggtgagggtccaattaggtccctcaccggtgga 31116688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 68 - 144
Target Start/End: Complemental strand, 31239177 - 31239101
Alignment:
Q  68 atattataacaaattatacttatctttttaaatgaagccaatgatatagcaaatataatatatattcatatcttttt 144  Q
    ||||| ||||||| ||||||||||||||| || ||   |||  ||||| ||||||||||||| |||| |||||||||    
T  31239177 atattgtaacaaactatacttatctttttcaaggatatcaagaatataacaaatataatataaattcttatcttttt 31239101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 148 - 204
Target Start/End: Complemental strand, 33357777 - 33357721
Alignment:
Q  148 ggtgaattctaaggtgagggttcaattaagtccctcaccggtggagcacacaaaaaa 204  Q
    |||| |||||| |||||||| |||  |||||||||||||||||||||| | ||||||    
T  33357777 ggtggattctagggtgagggatcagataagtccctcaccggtggagcagaaaaaaaa 33357721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 148 - 192
Target Start/End: Complemental strand, 50657189 - 50657145
Alignment:
Q  148 ggtgaattctaaggtgagggttcaattaagtccctcaccggtgga 192  Q
    |||| ||||||||| |||||  |||||||||||||||||||||||    
T  50657189 ggtggattctaaggcgagggagcaattaagtccctcaccggtgga 50657145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.00000000008; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 146 - 192
Target Start/End: Original strand, 2138475 - 2138521
Alignment:
Q  146 aaggtgaattctaaggtgagggttcaattaagtccctcaccggtgga 192  Q
    ||||||||||||| ||||||||| |||||| ||||||||||||||||    
T  2138475 aaggtgaattctagggtgagggtccaattaggtccctcaccggtgga 2138521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 68 - 134
Target Start/End: Original strand, 13708001 - 13708067
Alignment:
Q  68 atattataacaaattatacttatctttttaaatgaagccaatgatatagcaaatataatatatattc 134  Q
    |||||||||||||||||||||||||||| ||||||  |||||  ||||  |||||||||||| ||||    
T  13708001 atattataacaaattatacttatcttttaaaatgagaccaatagtataaaaaatataatataaattc 13708067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 68 - 134
Target Start/End: Original strand, 13710089 - 13710155
Alignment:
Q  68 atattataacaaattatacttatctttttaaatgaagccaatgatatagcaaatataatatatattc 134  Q
    |||||||||||||||||||||||||||| ||||||  |||||  ||||  |||||||||||| ||||    
T  13710089 atattataacaaattatacttatcttttaaaatgagaccaatagtataaaaaatataatataaattc 13710155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 68 - 134
Target Start/End: Original strand, 13712177 - 13712243
Alignment:
Q  68 atattataacaaattatacttatctttttaaatgaagccaatgatatagcaaatataatatatattc 134  Q
    |||||||||||||||||||||||||||| ||||||  |||||  ||||  |||||||||||| ||||    
T  13712177 atattataacaaattatacttatcttttaaaatgagaccaatagtataaaaaatataatataaattc 13712243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 68 - 134
Target Start/End: Original strand, 13715492 - 13715558
Alignment:
Q  68 atattataacaaattatacttatctttttaaatgaagccaatgatatagcaaatataatatatattc 134  Q
    |||||||||||||||||||||||||||| ||||||  |||||  ||||  |||||||||||| ||||    
T  13715492 atattataacaaattatacttatcttttaaaatgagaccaatagtataaaaaatataatataaattc 13715558  T

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Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 68 - 134
Target Start/End: Original strand, 13717580 - 13717646
Alignment:
Q  68 atattataacaaattatacttatctttttaaatgaagccaatgatatagcaaatataatatatattc 134  Q
    |||||||||||||||||||||||||||| ||||||  |||||  ||||  |||||||||||| ||||    
T  13717580 atattataacaaattatacttatcttttaaaatgagaccaatagtataaaaaatataatataaattc 13717646  T

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Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 147 - 191
Target Start/End: Original strand, 5312240 - 5312284
Alignment:
Q  147 aggtgaattctaaggtgagggttcaattaagtccctcaccggtgg 191  Q
    ||||||||||||  |||||||||||||||||||||||||| ||||    
T  5312240 aggtgaattctacagtgagggttcaattaagtccctcaccagtgg 5312284  T

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Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 147 - 190
Target Start/End: Complemental strand, 13084928 - 13084885
Alignment:
Q  147 aggtgaattctaaggtgagggttcaattaagtccctcaccggtg 190  Q
    |||||||||||| ||||||||||||| |||||| ||||||||||    
T  13084928 aggtgaattctagggtgagggttcaactaagtctctcaccggtg 13084885  T

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Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 148 - 190
Target Start/End: Complemental strand, 2741447 - 2741405
Alignment:
Q  148 ggtgaattctaaggtgagggttcaattaagtccctcaccggtg 190  Q
    ||||||||||||||||| |||| ||| ||||||||||||||||    
T  2741447 ggtgaattctaaggtgatggtttaatcaagtccctcaccggtg 2741405  T

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Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 68 - 144
Target Start/End: Original strand, 4577967 - 4578044
Alignment:
Q  68 atattataacaaattatacttatcttttt-aaatgaagccaatgatatagcaaatataatatatattcatatcttttt 144  Q
    ||||| ||||||||||||||||| ||||| |||| |  | ||  ||||||||||||||||||| |||| |||||||||    
T  4577967 atattctaacaaattatacttattttttttaaataacactaacaatatagcaaatataatataaattcttatcttttt 4578044  T

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Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 68 - 144
Target Start/End: Original strand, 16436872 - 16436948
Alignment:
Q  68 atattataacaaattatacttatctttttaaatgaagccaatgatatagcaaatataatatatattcatatcttttt 144  Q
    |||||| |||||| ||||||||| ||||  |||||   |||| |||||| |||||||||||| |||| |||||||||    
T  16436872 atattacaacaaactatacttatattttacaatgacatcaataatatagaaaatataatataaattcttatcttttt 16436948  T

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Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 148 - 192
Target Start/End: Complemental strand, 16719042 - 16718998
Alignment:
Q  148 ggtgaattctaaggtgagggttcaattaagtccctcaccggtgga 192  Q
    |||| |||||| ||||| || ||||||||||||||||||||||||    
T  16719042 ggtggattctagggtgacggatcaattaagtccctcaccggtgga 16718998  T

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Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 148 - 184
Target Start/End: Complemental strand, 19405121 - 19405085
Alignment:
Q  148 ggtgaattctaaggtgagggttcaattaagtccctca 184  Q
    ||||||||||||||||||||||||||||  |||||||    
T  19405121 ggtgaattctaaggtgagggttcaattagatccctca 19405085  T

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Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 68 - 144
Target Start/End: Complemental strand, 29178507 - 29178431
Alignment:
Q  68 atattataacaaattatacttatctttttaaatgaagccaatgatatagcaaatataatatatattcatatcttttt 144  Q
    ||||| ||||||| |||| |||| ||||| |||||  | ||| ||||||||||||||||||| |||| | |||||||    
T  29178507 atattttaacaaactataattatatttttcaatgagactaataatatagcaaatataatataaattcttgtcttttt 29178431  T

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Target: scaffold0627 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0627
Description:

Target: scaffold0627; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 154 - 192
Target Start/End: Original strand, 6470 - 6508
Alignment:
Q  154 ttctaaggtgagggttcaattaagtccctcaccggtgga 192  Q
    ||||| |||||||||||||||||||||||||||| ||||    
T  6470 ttctagggtgagggttcaattaagtccctcaccgatgga 6508  T

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Target: scaffold0002 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 150 - 186
Target Start/End: Original strand, 97206 - 97242
Alignment:
Q  150 tgaattctaaggtgagggttcaattaagtccctcacc 186  Q
    ||||||||||||||| |||||||| ||||||||||||    
T  97206 tgaattctaaggtgatggttcaatcaagtccctcacc 97242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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