View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3232_low_20 (Length: 217)
Name: NF3232_low_20
Description: NF3232
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3232_low_20 |
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Alignment Details
Target: chr5 (Bit Score: 147; Significance: 1e-77; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 17 - 194
Target Start/End: Complemental strand, 607849 - 607667
Alignment:
| Q |
17 |
cacagacgagccaatgtcacaaaagataaaacaagcaatcttgtatatacatatctcgataggtttcgcgtcacat-----ggacatcgtaaaaagaggc |
111 |
Q |
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| T |
607849 |
cacacacgagacaatgtcacaaaagatagaacaagcaatcttgtatatacatatctcgataggtttcgcgtcacataatatggacatcgtaaaaagaggc |
607750 |
T |
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| Q |
112 |
gttacagaggatagtgcaatgatgcacaagacacaacgtgtacacaagatacgtcacataaaacacagagcacatgaacctcg |
194 |
Q |
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| T |
607749 |
gttacagaggatagtgcaatgatgcacaagacacaacgtgtacacaagatacgtcacataagacacagagcacatgaacctcg |
607667 |
T |
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