View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3232_low_3 (Length: 552)

Name: NF3232_low_3
Description: NF3232
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3232_low_3
NF3232_low_3
[»] chr5 (2 HSPs)
chr5 (1-552)||(607822-608374)
chr5 (240-320)||(7959219-7959299)


Alignment Details
Target: chr5 (Bit Score: 488; Significance: 0; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 488; E-Value: 0
Query Start/End: Original strand, 1 - 552
Target Start/End: Complemental strand, 608374 - 607822
Alignment:
Q  1 cgacaaattgattgataggatccaacagtgtacatttgtttatctatgtttgctcggactgaaaactagagttcgctcgttcaaatgcaagatgctagga 100  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  608374 cgacaaattgattgataggatccaacattgtacatttgtttatctatgtttgctcggactgaaaactagagttcactcgttcaaatgcaagatgctagga 608275  T
Q  101 tgtcgaggttatgcttccacattcaggcgcttctcaaatcctcttcagaagcatcttccaagtttgctaatttggatagaaaggtcctcgattttagaag 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  608274 tgtcgaggttatgcttccacattcaggcgcttctcaaatcctctttaaaagcatcttccaagtttgctaatttggatagaaaggtcctcgattttagaag 608175  T
Q  201 tgtatcctccttctgcattgtaactttgcaatgtagtttgttcttgcgttttaccaaccctagttgatataaatcatcggaatttttaattaatagtgaa 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  608174 tgtatcctccttctgcattgtaactttgcaatgtagtttgttcttgcgttttaccaaccctagttgatataaatcatcggaatttttaattaatagtgaa 608075  T
Q  301 tcaccatttatacaaggtttgggagctcgctaaaaggaactaaaaggaacatcaatcacatcatttaaggtttgtgtgaaggaatgacattgcttggttg 400  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  608074 tcaccatttatacaaggtttgggagctcgctaaaaggaactaaaaggaacatcaatcacatcatttaaggcttgtgtgaaggaatgacattgcttggttg 607975  T
Q  401 gtgaaagatcgtcgctaatttcacgttgtcaaatatgttgaatatgaggagacgatgatgatgcc-aacnnnnnnnctccaaaacaagttacaagcctta 499  Q
    |||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||       ||||||||||||||||||||||||    
T  607974 gtgaagaatcgtcgctaatttcacgttgtcaaatatgttgaatatgaggagacgatgatgaagccaaacaaaaaaactccaaaacaagttacaagcctta 607875  T
Q  500 aaagcgacgacgcaacgagcaacaacacacacgagccaatgtcacaaaagata 552  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  607874 aaagcgacgacgcaacgagcaacaacacacacgagacaatgtcacaaaagata 607822  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 240 - 320
Target Start/End: Complemental strand, 7959299 - 7959219
Alignment:
Q  240 gttcttgcgttttaccaaccctagttgatataaatcatcggaatttttaattaatagtgaatcaccatttatacaaggttt 320  Q
    |||||||  |||| ||||||||| ||| |||||||| || ||| |||||||| | ||||||||||| ||||| ||| ||||    
T  7959299 gttcttgtatttttccaaccctacttggtataaatcttcagaaattttaattgacagtgaatcaccctttatgcaaagttt 7959219  T

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