View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3232_low_7 (Length: 354)

Name: NF3232_low_7
Description: NF3232
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3232_low_7
NF3232_low_7
[»] chr4 (32 HSPs)
chr4 (131-350)||(29996670-29996888)
chr4 (292-342)||(27368191-27368241)
chr4 (292-340)||(9201648-9201696)
chr4 (290-342)||(23297433-23297485)
chr4 (299-335)||(48591470-48591506)
chr4 (292-342)||(8057127-8057177)
chr4 (292-342)||(43415328-43415378)
chr4 (290-342)||(212987-213038)
chr4 (290-342)||(948067-948119)
chr4 (290-342)||(3564215-3564267)
chr4 (292-336)||(4603376-4603420)
chr4 (290-342)||(8130483-8130535)
chr4 (290-342)||(12495685-12495737)
chr4 (292-340)||(19298175-19298223)
chr4 (299-342)||(7148776-7148819)
chr4 (299-342)||(28074369-28074412)
chr4 (290-337)||(29877634-29877681)
chr4 (299-342)||(36740908-36740951)
chr4 (300-343)||(55638119-55638162)
chr4 (299-337)||(825686-825724)
chr4 (147-201)||(3316551-3316605)
chr4 (290-340)||(48238177-48238227)
chr4 (299-340)||(3966734-3966775)
chr4 (290-342)||(42611906-42611959)
chr4 (291-336)||(43740120-43740165)
chr4 (299-336)||(46176023-46176060)
chr4 (290-342)||(1374402-1374454)
chr4 (299-331)||(19414133-19414165)
chr4 (292-340)||(22117351-22117399)
chr4 (300-336)||(22303101-22303137)
chr4 (292-340)||(30956783-30956830)
chr4 (306-342)||(35010222-35010258)
[»] chr7 (25 HSPs)
chr7 (290-343)||(12473201-12473254)
chr7 (290-342)||(34922926-34922978)
chr7 (291-342)||(41677370-41677421)
chr7 (298-340)||(21249159-21249201)
chr7 (299-343)||(42083455-42083499)
chr7 (292-340)||(16932970-16933018)
chr7 (292-340)||(16938353-16938401)
chr7 (292-340)||(35246669-35246717)
chr7 (290-342)||(38372553-38372605)
chr7 (290-342)||(44613512-44613564)
chr7 (292-343)||(9546422-9546473)
chr7 (299-342)||(22575590-22575633)
chr7 (299-342)||(47511047-47511090)
chr7 (299-340)||(1312118-1312159)
chr7 (292-340)||(2194084-2194133)
chr7 (299-332)||(17944531-17944564)
chr7 (292-337)||(22032759-22032804)
chr7 (299-340)||(24371447-24371488)
chr7 (299-336)||(28004588-28004625)
chr7 (290-342)||(7098139-7098191)
chr7 (292-340)||(14676000-14676048)
chr7 (292-336)||(14729970-14730014)
chr7 (292-340)||(16958813-16958861)
chr7 (292-340)||(23137203-23137251)
chr7 (300-340)||(44799409-44799448)
[»] chr8 (24 HSPs)
chr8 (292-340)||(38195484-38195532)
chr8 (290-343)||(19327862-19327915)
chr8 (290-342)||(13131425-13131477)
chr8 (292-340)||(42363357-42363405)
chr8 (299-342)||(32975691-32975734)
chr8 (299-341)||(16706140-16706182)
chr8 (299-340)||(35453414-35453455)
chr8 (299-340)||(38338891-38338932)
chr8 (299-340)||(42102111-42102152)
chr8 (300-340)||(11988202-11988242)
chr8 (299-342)||(2289925-2289968)
chr8 (301-340)||(12607086-12607125)
chr8 (299-342)||(28879062-28879105)
chr8 (299-342)||(32213061-32213104)
chr8 (300-342)||(1089018-1089060)
chr8 (300-342)||(13265489-13265531)
chr8 (300-342)||(24350558-24350600)
chr8 (300-342)||(31459051-31459093)
chr8 (299-340)||(29243104-29243145)
chr8 (306-342)||(402127-402163)
chr8 (300-340)||(3664141-3664181)
chr8 (290-342)||(16972396-16972448)
chr8 (290-342)||(32131435-32131487)
chr8 (292-340)||(42666995-42667043)
[»] chr2 (24 HSPs)
chr2 (292-340)||(446449-446497)
chr2 (292-340)||(32366147-32366195)
chr2 (300-340)||(22422209-22422249)
chr2 (290-342)||(34913429-34913481)
chr2 (290-337)||(27703502-27703549)
chr2 (299-340)||(40301356-40301397)
chr2 (290-334)||(7480949-7480993)
chr2 (290-342)||(21788452-21788504)
chr2 (290-342)||(33321442-33321494)
chr2 (292-343)||(1836997-1837048)
chr2 (299-342)||(8441477-8441520)
chr2 (300-331)||(26440096-26440127)
chr2 (299-342)||(42839359-42839402)
chr2 (300-342)||(12683645-12683687)
chr2 (290-340)||(27881038-27881088)
chr2 (300-342)||(29133706-29133748)
chr2 (299-340)||(10574202-10574243)
chr2 (299-340)||(17531953-17531994)
chr2 (292-325)||(21788570-21788603)
chr2 (292-340)||(19683571-19683619)
chr2 (292-336)||(22898401-22898445)
chr2 (290-342)||(25836751-25836803)
chr2 (299-331)||(27709718-27709750)
chr2 (290-342)||(33321351-33321403)
[»] chr1 (24 HSPs)
chr1 (290-342)||(41003382-41003434)
chr1 (290-337)||(35897667-35897714)
chr1 (292-340)||(17348877-17348925)
chr1 (299-343)||(51409745-51409789)
chr1 (301-340)||(8410155-8410194)
chr1 (291-342)||(15631900-15631951)
chr1 (299-342)||(36423020-36423063)
chr1 (290-342)||(391163-391216)
chr1 (297-342)||(10082252-10082297)
chr1 (299-340)||(32497312-32497353)
chr1 (290-342)||(4068110-4068162)
chr1 (292-340)||(5347152-5347200)
chr1 (292-340)||(13412493-13412541)
chr1 (292-340)||(15235201-15235249)
chr1 (299-343)||(22593445-22593489)
chr1 (299-340)||(5243444-5243485)
chr1 (290-342)||(9572823-9572876)
chr1 (299-340)||(15791388-15791429)
chr1 (299-340)||(17628465-17628506)
chr1 (299-340)||(20169268-20169309)
chr1 (290-342)||(10850110-10850162)
chr1 (302-334)||(13038954-13038986)
chr1 (299-331)||(31378801-31378833)
chr1 (302-342)||(39941377-39941417)
[»] chr3 (22 HSPs)
chr3 (292-342)||(24842146-24842196)
chr3 (292-340)||(4257342-4257390)
chr3 (290-340)||(21296761-21296811)
chr3 (290-342)||(22809232-22809285)
chr3 (297-342)||(24841426-24841471)
chr3 (292-336)||(28623279-28623323)
chr3 (290-342)||(40581116-40581168)
chr3 (290-342)||(53218079-53218131)
chr3 (292-339)||(3876203-3876249)
chr3 (300-339)||(30198998-30199037)
chr3 (300-342)||(5129854-5129896)
chr3 (292-342)||(10667395-10667445)
chr3 (300-342)||(41601370-41601412)
chr3 (302-336)||(42956224-42956258)
chr3 (292-342)||(51409390-51409440)
chr3 (305-342)||(3845865-3845902)
chr3 (297-342)||(7292682-7292727)
chr3 (290-331)||(33946592-33946633)
chr3 (300-337)||(36182508-36182545)
chr3 (290-342)||(11528886-11528938)
chr3 (300-340)||(24521246-24521286)
chr3 (290-342)||(32901187-32901239)
[»] chr6 (21 HSPs)
chr6 (290-343)||(30533975-30534028)
chr6 (299-343)||(10054385-10054429)
chr6 (294-342)||(21891377-21891425)
chr6 (292-339)||(32675829-32675875)
chr6 (292-342)||(23239244-23239294)
chr6 (292-325)||(2040121-2040154)
chr6 (292-340)||(1468173-1468221)
chr6 (290-342)||(2040225-2040277)
chr6 (300-340)||(22816626-22816666)
chr6 (297-337)||(32675933-32675973)
chr6 (299-342)||(2034268-2034311)
chr6 (294-336)||(9582501-9582543)
chr6 (297-331)||(17300788-17300822)
chr6 (292-342)||(34223564-34223614)
chr6 (291-340)||(4272378-4272427)
chr6 (292-325)||(6776921-6776954)
chr6 (299-340)||(10184370-10184411)
chr6 (300-337)||(28758365-28758402)
chr6 (299-336)||(32615459-32615496)
chr6 (290-342)||(6758622-6758674)
chr6 (290-342)||(29623516-29623568)
[»] chr5 (32 HSPs)
chr5 (290-354)||(7111007-7111074)
chr5 (297-342)||(7984107-7984152)
chr5 (299-342)||(2878715-2878758)
chr5 (300-342)||(26003002-26003044)
chr5 (300-342)||(29922228-29922270)
chr5 (292-342)||(36106778-36106828)
chr5 (297-342)||(1473358-1473403)
chr5 (290-343)||(22573648-22573701)
chr5 (299-340)||(33757092-33757133)
chr5 (291-342)||(589145-589197)
chr5 (292-340)||(2531323-2531371)
chr5 (292-340)||(15122542-15122590)
chr5 (292-340)||(15709932-15709980)
chr5 (292-336)||(16722024-16722068)
chr5 (297-337)||(17657244-17657284)
chr5 (299-342)||(40697005-40697048)
chr5 (300-342)||(12467269-12467311)
chr5 (292-342)||(12987053-12987103)
chr5 (292-342)||(13060641-13060691)
chr5 (290-336)||(17128273-17128319)
chr5 (292-342)||(25332277-25332327)
chr5 (300-342)||(41534628-41534670)
chr5 (290-343)||(11991300-11991353)
chr5 (299-340)||(33667433-33667474)
chr5 (300-332)||(10274279-10274311)
chr5 (290-342)||(15413987-15414039)
chr5 (292-340)||(17668397-17668445)
chr5 (290-342)||(22201975-22202027)
chr5 (292-339)||(35536945-35536990)
chr5 (297-325)||(42478939-42478967)
chr5 (290-342)||(42852017-42852069)
chr5 (290-342)||(43318998-43319050)
[»] scaffold0157 (1 HSPs)
scaffold0157 (290-342)||(24740-24792)
[»] scaffold0006 (1 HSPs)
scaffold0006 (292-340)||(279032-279080)
[»] scaffold1367 (2 HSPs)
scaffold1367 (291-342)||(1054-1105)
scaffold1367 (292-325)||(1171-1204)
[»] scaffold0012 (1 HSPs)
scaffold0012 (297-340)||(178502-178545)
[»] scaffold0332 (1 HSPs)
scaffold0332 (299-340)||(14787-14828)
[»] scaffold0057 (1 HSPs)
scaffold0057 (301-342)||(43855-43896)
[»] scaffold0048 (1 HSPs)
scaffold0048 (299-340)||(59272-59313)
[»] scaffold1088 (1 HSPs)
scaffold1088 (290-342)||(1289-1341)
[»] scaffold0100 (1 HSPs)
scaffold0100 (300-336)||(38497-38533)
[»] scaffold0004 (1 HSPs)
scaffold0004 (300-340)||(242680-242720)


Alignment Details
Target: chr4 (Bit Score: 129; Significance: 1e-66; HSPs: 32)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 131 - 350
Target Start/End: Complemental strand, 29996888 - 29996670
Alignment:
Q  131 aaataaaacatgccacatcagcagtgatatgaagagtgtgcaacataaagcttgtcaacctatcattttccttgctaaaatcgtagaagccgcactctct 230  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  29996888 aaataaaacatgccacatcagcagggatatgaagagtgtgcaacataaagcttgtcaacatatcattttccttgctaaaatcgtagaagccgcactctct 29996789  T
Q  231 accgtaggtttgatataatattattagcctgtttggattgacttannnnnnnnnnnnnngcaaaataacttatgcaaataaataagtttttatatattat 330  Q
       |||||||||||| |||||||||||||||||||| ||||||||              |||||| || ||||||||||||||||| |||||||||||||    
T  29996788 gtggtaggtttgatacaatattattagcctgtttggtttgactta-tttttgagtttttgcaaaacaatttatgcaaataaataagcttttatatattat 29996690  T
Q  331 tcataagtttgtagtttatg 350  Q
    ||||||||||||| ||||||    
T  29996689 tcataagtttgtaatttatg 29996670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 292 - 342
Target Start/End: Complemental strand, 27368241 - 27368191
Alignment:
Q  292 aaaataacttatgcaaataaataagtttttatatattattcataagtttgt 342  Q
    |||| |||||||||||||||||||| |||||||||||||||||||||||||    
T  27368241 aaaacaacttatgcaaataaataagcttttatatattattcataagtttgt 27368191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 292 - 340
Target Start/End: Original strand, 9201648 - 9201696
Alignment:
Q  292 aaaataacttatgcaaataaataagtttttatatattattcataagttt 340  Q
    |||||||||||||||||||||||||||||||| ||||||| ||||||||    
T  9201648 aaaataacttatgcaaataaataagtttttatgtattatttataagttt 9201696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 290 - 342
Target Start/End: Original strand, 23297433 - 23297485
Alignment:
Q  290 gcaaaataacttatgcaaataaataagtttttatatattattcataagtttgt 342  Q
    |||||||| |||||||||||||||||| |||||| ||||||||||||||||||    
T  23297433 gcaaaatagcttatgcaaataaataagcttttatgtattattcataagtttgt 23297485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 299 - 335
Target Start/End: Complemental strand, 48591506 - 48591470
Alignment:
Q  299 cttatgcaaataaataagtttttatatattattcata 335  Q
    |||||||||||||||||||||||||||||||||||||    
T  48591506 cttatgcaaataaataagtttttatatattattcata 48591470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 292 - 342
Target Start/End: Complemental strand, 8057177 - 8057127
Alignment:
Q  292 aaaataacttatgcaaataaataagtttttatatattattcataagtttgt 342  Q
    ||||||||| ||||||| |||||||||||||| ||||||||||||| ||||    
T  8057177 aaaataactaatgcaaaaaaataagtttttatttattattcataagcttgt 8057127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 292 - 342
Target Start/End: Complemental strand, 43415378 - 43415328
Alignment:
Q  292 aaaataacttatgcaaataaataagtttttatatattattcataagtttgt 342  Q
    |||| ||||| ||||||||||||||||||||| ||||||||||||| ||||    
T  43415378 aaaacaacttctgcaaataaataagtttttatgtattattcataaggttgt 43415328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 290 - 342
Target Start/End: Complemental strand, 213038 - 212987
Alignment:
Q  290 gcaaaataacttatgcaaataaataagtttttatatattattcataagtttgt 342  Q
    |||||| |||||||||||||||||||| |||||| ||||||||||||| ||||    
T  213038 gcaaaacaacttatgcaaataaataag-ttttatttattattcataagcttgt 212987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 290 - 342
Target Start/End: Original strand, 948067 - 948119
Alignment:
Q  290 gcaaaataacttatgcaaataaataagtttttatatattattcataagtttgt 342  Q
    |||||||| |||||| ||||||||||| |||||| |||||||||||| |||||    
T  948067 gcaaaatagcttatgaaaataaataagcttttatgtattattcataactttgt 948119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 290 - 342
Target Start/End: Original strand, 3564215 - 3564267
Alignment:
Q  290 gcaaaataacttatgcaaataaataagtttttatatattattcataagtttgt 342  Q
    |||||| | |||||| ||||||||||  |||||||||||||||||||||||||    
T  3564215 gcaaaacagcttatgaaaataaataaacttttatatattattcataagtttgt 3564267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 292 - 336
Target Start/End: Complemental strand, 4603420 - 4603376
Alignment:
Q  292 aaaataacttatgcaaataaataagtttttatatattattcataa 336  Q
    |||| ||||||||||||||||||||||||||| ||||||| ||||    
T  4603420 aaaacaacttatgcaaataaataagtttttatgtattatttataa 4603376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 290 - 342
Target Start/End: Original strand, 8130483 - 8130535
Alignment:
Q  290 gcaaaataacttatgcaaataaataagtttttatatattattcataagtttgt 342  Q
    |||||| | |||||||||||||||||| ||||||  |||||||||||||||||    
T  8130483 gcaaaacagcttatgcaaataaataagcttttatgcattattcataagtttgt 8130535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 290 - 342
Target Start/End: Complemental strand, 12495737 - 12495685
Alignment:
Q  290 gcaaaataacttatgcaaataaataagtttttatatattattcataagtttgt 342  Q
    |||||| | |||||||||||||||||| |||||| ||||||||||||| ||||    
T  12495737 gcaaaacagcttatgcaaataaataagcttttatgtattattcataagcttgt 12495685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 292 - 340
Target Start/End: Complemental strand, 19298223 - 19298175
Alignment:
Q  292 aaaataacttatgcaaataaataagtttttatatattattcataagttt 340  Q
    |||| ||||||||||||||||||| ||||||| ||||||| ||||||||    
T  19298223 aaaacaacttatgcaaataaataaatttttatgtattatttataagttt 19298175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 299 - 342
Target Start/End: Original strand, 7148776 - 7148819
Alignment:
Q  299 cttatgcaaataaataagtttttatatattattcataagtttgt 342  Q
    |||||||||||||||||| |||||| ||||||||||||| ||||    
T  7148776 cttatgcaaataaataagcttttatgtattattcataagcttgt 7148819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 299 - 342
Target Start/End: Original strand, 28074369 - 28074412
Alignment:
Q  299 cttatgcaaataaataagtttttatatattattcataagtttgt 342  Q
    |||||||||||||||||| |||||| ||||||||||||| ||||    
T  28074369 cttatgcaaataaataagcttttatgtattattcataagcttgt 28074412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 290 - 337
Target Start/End: Original strand, 29877634 - 29877681
Alignment:
Q  290 gcaaaataacttatgcaaataaataagtttttatatattattcataag 337  Q
    |||||| || ||||||||||||||||| |||||| |||||||||||||    
T  29877634 gcaaaacaatttatgcaaataaataagcttttatgtattattcataag 29877681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 299 - 342
Target Start/End: Original strand, 36740908 - 36740951
Alignment:
Q  299 cttatgcaaataaataagtttttatatattattcataagtttgt 342  Q
    |||||||||||||||||| ||||||||||||| |||||| ||||    
T  36740908 cttatgcaaataaataagcttttatatattatgcataagcttgt 36740951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 300 - 343
Target Start/End: Complemental strand, 55638162 - 55638119
Alignment:
Q  300 ttatgcaaataaataagtttttatatattattcataagtttgta 343  Q
    ||||||||||||| ||| |||||| |||||||||||||||||||    
T  55638162 ttatgcaaataaacaagcttttatgtattattcataagtttgta 55638119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 299 - 337
Target Start/End: Original strand, 825686 - 825724
Alignment:
Q  299 cttatgcaaataaataagtttttatatattattcataag 337  Q
    |||||||||||||||||| |||| |||||||||||||||    
T  825686 cttatgcaaataaataagcttttctatattattcataag 825724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 147 - 201
Target Start/End: Complemental strand, 3316605 - 3316551
Alignment:
Q  147 atcagcagtgatatgaagagtgtgcaacataaagcttgtcaacctatcattttcc 201  Q
    |||||||||| ||| ||| |||| |||||||||| ||||||| ||||||||||||    
T  3316605 atcagcagtggtataaagggtgtacaacataaaggttgtcaatctatcattttcc 3316551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 290 - 340
Target Start/End: Complemental strand, 48238227 - 48238177
Alignment:
Q  290 gcaaaataacttatgcaaataaataagtttttatatattattcataagttt 340  Q
    ||||||||||||||  |||||||||| |||||||| || ||||||||||||    
T  48238227 gcaaaataacttatataaataaataaatttttataaatcattcataagttt 48238177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 299 - 340
Target Start/End: Original strand, 3966734 - 3966775
Alignment:
Q  299 cttatgcaaataaataagtttttatatattattcataagttt 340  Q
    ||||||||||||||||| ||||||| |||| |||||||||||    
T  3966734 cttatgcaaataaataaatttttatgtattgttcataagttt 3966775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 290 - 342
Target Start/End: Complemental strand, 42611959 - 42611906
Alignment:
Q  290 gcaaaataacttatgcaaataaataag-tttttatatattattcataagtttgt 342  Q
    |||||| |||||||||||||||||||| ||| ||| ||||||||||||| ||||    
T  42611959 gcaaaacaacttatgcaaataaataagctttatatgtattattcataagcttgt 42611906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 291 - 336
Target Start/End: Complemental strand, 43740165 - 43740120
Alignment:
Q  291 caaaataacttatgcaaataaataagtttttatatattattcataa 336  Q
    ||||| || ||||| ||||||||||||||||| |||||||||||||    
T  43740165 caaaacaatttatgaaaataaataagtttttacatattattcataa 43740120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 299 - 336
Target Start/End: Complemental strand, 46176060 - 46176023
Alignment:
Q  299 cttatgcaaataaataagtttttatatattattcataa 336  Q
    ||||||||||||||||||||||||| ||||||| ||||    
T  46176060 cttatgcaaataaataagtttttatgtattatttataa 46176023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 290 - 342
Target Start/End: Complemental strand, 1374454 - 1374402
Alignment:
Q  290 gcaaaataacttatgcaaataaataagtttttatatattattcataagtttgt 342  Q
    |||||| |||||||||||||||| ||||||||||  || ||||||||| ||||    
T  1374454 gcaaaaaaacttatgcaaataaaaaagtttttatgcatgattcataagcttgt 1374402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 299 - 331
Target Start/End: Original strand, 19414133 - 19414165
Alignment:
Q  299 cttatgcaaataaataagtttttatatattatt 331  Q
    ||||||||||||||||||||||||| |||||||    
T  19414133 cttatgcaaataaataagtttttatgtattatt 19414165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 292 - 340
Target Start/End: Original strand, 22117351 - 22117399
Alignment:
Q  292 aaaataacttatgcaaataaataagtttttatatattattcataagttt 340  Q
    |||| ||||||||||||||||||  ||||||| ||||||| ||||||||    
T  22117351 aaaacaacttatgcaaataaatacatttttatgtattatttataagttt 22117399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 300 - 336
Target Start/End: Original strand, 22303101 - 22303137
Alignment:
Q  300 ttatgcaaataaataagtttttatatattattcataa 336  Q
    |||||||||||||||||||||||| ||||||| ||||    
T  22303101 ttatgcaaataaataagtttttatgtattatttataa 22303137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 292 - 340
Target Start/End: Complemental strand, 30956830 - 30956783
Alignment:
Q  292 aaaataacttatgcaaataaataagtttttatatattattcataagttt 340  Q
    |||||| |||||||||||||||||||||||| || | ||||||||||||    
T  30956830 aaaatagcttatgcaaataaataagtttttacat-taattcataagttt 30956783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 306 - 342
Target Start/End: Original strand, 35010222 - 35010258
Alignment:
Q  306 aaataaataagtttttatatattattcataagtttgt 342  Q
    |||||||||||||||||| ||||||| ||||||||||    
T  35010222 aaataaataagtttttatgtattatttataagtttgt 35010258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 25)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 290 - 343
Target Start/End: Original strand, 12473201 - 12473254
Alignment:
Q  290 gcaaaataacttatgcaaataaataagtttttatatattattcataagtttgta 343  Q
    |||||| |||||||||||| |||||||||||||| |||||||||||||||||||    
T  12473201 gcaaaacaacttatgcaaacaaataagtttttatgtattattcataagtttgta 12473254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 290 - 342
Target Start/End: Original strand, 34922926 - 34922978
Alignment:
Q  290 gcaaaataacttatgcaaataaataagtttttatatattattcataagtttgt 342  Q
    |||||| |||||||||||||||||||| |||||| ||||||||||||||||||    
T  34922926 gcaaaacaacttatgcaaataaataagcttttatgtattattcataagtttgt 34922978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 291 - 342
Target Start/End: Original strand, 41677370 - 41677421
Alignment:
Q  291 caaaataacttatgcaaataaataagtttttatatattattcataagtttgt 342  Q
    ||||| ||||||||||||||||||| ||||||| ||||||||||||||||||    
T  41677370 caaaacaacttatgcaaataaataaatttttatgtattattcataagtttgt 41677421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 298 - 340
Target Start/End: Original strand, 21249159 - 21249201
Alignment:
Q  298 acttatgcaaataaataagtttttatatattattcataagttt 340  Q
    |||||||||||||||||||||||||| ||||||||||||||||    
T  21249159 acttatgcaaataaataagtttttatgtattattcataagttt 21249201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 299 - 343
Target Start/End: Complemental strand, 42083499 - 42083455
Alignment:
Q  299 cttatgcaaataaataagtttttatatattattcataagtttgta 343  Q
    |||||| |||||||||||||||||| |||||||||||||||||||    
T  42083499 cttatgtaaataaataagtttttatgtattattcataagtttgta 42083455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 292 - 340
Target Start/End: Complemental strand, 16933018 - 16932970
Alignment:
Q  292 aaaataacttatgcaaataaataagtttttatatattattcataagttt 340  Q
    |||||||||||||||| ||||||| ||||||| ||||||| ||||||||    
T  16933018 aaaataacttatgcaactaaataaatttttatgtattatttataagttt 16932970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 292 - 340
Target Start/End: Complemental strand, 16938401 - 16938353
Alignment:
Q  292 aaaataacttatgcaaataaataagtttttatatattattcataagttt 340  Q
    |||||||||||||||| ||||||| ||||||| ||||||| ||||||||    
T  16938401 aaaataacttatgcaactaaataaatttttatgtattatttataagttt 16938353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 292 - 340
Target Start/End: Original strand, 35246669 - 35246717
Alignment:
Q  292 aaaataacttatgcaaataaataagtttttatatattattcataagttt 340  Q
    |||| ||||||||||||||||||||||||||| ||||||| | ||||||    
T  35246669 aaaacaacttatgcaaataaataagtttttatgtattatttaaaagttt 35246717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 290 - 342
Target Start/End: Original strand, 38372553 - 38372605
Alignment:
Q  290 gcaaaataacttatgcaaataaataagtttttatatattattcataagtttgt 342  Q
    |||||| | |||||||||||||||||| | |||| ||||||||||||||||||    
T  38372553 gcaaaacagcttatgcaaataaataagctcttatgtattattcataagtttgt 38372605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 290 - 342
Target Start/End: Complemental strand, 44613564 - 44613512
Alignment:
Q  290 gcaaaataacttatgcaaataaataagtttttatatattattcataagtttgt 342  Q
    |||||| | |||||||||||||||||| |||||| ||||||||||||| ||||    
T  44613564 gcaaaacagcttatgcaaataaataagcttttatttattattcataagcttgt 44613512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 292 - 343
Target Start/End: Complemental strand, 9546473 - 9546422
Alignment:
Q  292 aaaataacttatgcaaataaataagtttttatatattattcataagtttgta 343  Q
    ||||||| ||||||||||||||||  |||||| |||||||||||| ||||||    
T  9546473 aaaataatttatgcaaataaataaagttttatgtattattcataaatttgta 9546422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 299 - 342
Target Start/End: Original strand, 22575590 - 22575633
Alignment:
Q  299 cttatgcaaataaataagtttttatatattattcataagtttgt 342  Q
    |||||||||||||||| |||||||| ||||||| ||||||||||    
T  22575590 cttatgcaaataaatacgtttttatgtattatttataagtttgt 22575633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 299 - 342
Target Start/End: Original strand, 47511047 - 47511090
Alignment:
Q  299 cttatgcaaataaataagtttttatatattattcataagtttgt 342  Q
    |||||||||||||||||| |||||| ||||||||||||| ||||    
T  47511047 cttatgcaaataaataagcttttatgtattattcataagcttgt 47511090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 299 - 340
Target Start/End: Original strand, 1312118 - 1312159
Alignment:
Q  299 cttatgcaaataaataagtttttatatattattcataagttt 340  Q
    ||||| || |||||||||||||||||||||||| ||||||||    
T  1312118 cttatacagataaataagtttttatatattatttataagttt 1312159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 292 - 340
Target Start/End: Complemental strand, 2194133 - 2194084
Alignment:
Q  292 aaaataacttatgcaaataaataagtttttatata-ttattcataagttt 340  Q
    |||||||||||||||||||| ||||||||||| || ||||| ||||||||    
T  2194133 aaaataacttatgcaaataattaagtttttatgtacttatttataagttt 2194084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 299 - 332
Target Start/End: Original strand, 17944531 - 17944564
Alignment:
Q  299 cttatgcaaataaataagtttttatatattattc 332  Q
    |||||||||||||||||| |||||||||||||||    
T  17944531 cttatgcaaataaataagcttttatatattattc 17944564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 292 - 337
Target Start/End: Original strand, 22032759 - 22032804
Alignment:
Q  292 aaaataacttatgcaaataaataagtttttatatattattcataag 337  Q
    |||| |||||||||||||||||| |||||||| ||||||| |||||    
T  22032759 aaaacaacttatgcaaataaatatgtttttatgtattatttataag 22032804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 299 - 340
Target Start/End: Complemental strand, 24371488 - 24371447
Alignment:
Q  299 cttatgcaaataaataagtttttatatattattcataagttt 340  Q
    |||||||||||||||||||||| || ||||||| ||||||||    
T  24371488 cttatgcaaataaataagttttaatgtattatttataagttt 24371447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 299 - 336
Target Start/End: Original strand, 28004588 - 28004625
Alignment:
Q  299 cttatgcaaataaataagtttttatatattattcataa 336  Q
    ||||||||||||||||||||||||| ||||||| ||||    
T  28004588 cttatgcaaataaataagtttttatgtattatttataa 28004625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 290 - 342
Target Start/End: Complemental strand, 7098191 - 7098139
Alignment:
Q  290 gcaaaataacttatgcaaataaataagtttttatatattattcataagtttgt 342  Q
    ||||||||  |||| |||||||||||| ||||||  |||||||||||||||||    
T  7098191 gcaaaatagtttatacaaataaataagattttatgaattattcataagtttgt 7098139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 292 - 340
Target Start/End: Complemental strand, 14676048 - 14676000
Alignment:
Q  292 aaaataacttatgcaaataaataagtttttatatattattcataagttt 340  Q
    |||| |||||||||||||||||| || ||||| ||||||| ||||||||    
T  14676048 aaaacaacttatgcaaataaataggtgtttatgtattatttataagttt 14676000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 292 - 336
Target Start/End: Original strand, 14729970 - 14730014
Alignment:
Q  292 aaaataacttatgcaaataaataagtttttatatattattcataa 336  Q
    |||| ||||||| |||||||||||| |||||| ||||||||||||    
T  14729970 aaaacaacttatccaaataaataagattttatttattattcataa 14730014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 292 - 340
Target Start/End: Original strand, 16958813 - 16958861
Alignment:
Q  292 aaaataacttatgcaaataaataagtttttatatattattcataagttt 340  Q
    |||| ||||||||||| ||||||| ||||||| ||||||| ||||||||    
T  16958813 aaaacaacttatgcaactaaataaatttttatgtattatttataagttt 16958861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 292 - 340
Target Start/End: Complemental strand, 23137251 - 23137203
Alignment:
Q  292 aaaataacttatgcaaataaataagtttttatatattattcataagttt 340  Q
    |||||||||||| |||| |||||| ||||||| ||||||| ||||||||    
T  23137251 aaaataacttatacaaacaaataaatttttatgtattatttataagttt 23137203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 300 - 340
Target Start/End: Original strand, 44799409 - 44799448
Alignment:
Q  300 ttatgcaaataaataagtttttatatattattcataagttt 340  Q
    |||||||||||||||||||||||| ||||||| ||||||||    
T  44799409 ttatgcaaataaataagtttttat-tattatttataagttt 44799448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 24)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 292 - 340
Target Start/End: Original strand, 38195484 - 38195532
Alignment:
Q  292 aaaataacttatgcaaataaataagtttttatatattattcataagttt 340  Q
    |||| ||||||||||||||||||||||||||||||||||| ||||||||    
T  38195484 aaaacaacttatgcaaataaataagtttttatatattatttataagttt 38195532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 290 - 343
Target Start/End: Original strand, 19327862 - 19327915
Alignment:
Q  290 gcaaaataacttatgcaaataaataagtttttatatattattcataagtttgta 343  Q
    |||||| |||||||||||||||||||  |||||| |||||||||||||||||||    
T  19327862 gcaaaacaacttatgcaaataaataaacttttatgtattattcataagtttgta 19327915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 290 - 342
Target Start/End: Original strand, 13131425 - 13131477
Alignment:
Q  290 gcaaaataacttatgcaaataaataagtttttatatattattcataagtttgt 342  Q
    |||||| || ||||||||||||||||| |||||| ||||||||||||||||||    
T  13131425 gcaaaacaaattatgcaaataaataagcttttatgtattattcataagtttgt 13131477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 292 - 340
Target Start/End: Complemental strand, 42363405 - 42363357
Alignment:
Q  292 aaaataacttatgcaaataaataagtttttatatattattcataagttt 340  Q
    |||||| ||||||||||||||||||||||||| ||||||| ||||||||    
T  42363405 aaaatagcttatgcaaataaataagtttttatgtattatttataagttt 42363357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 299 - 342
Target Start/End: Original strand, 32975691 - 32975734
Alignment:
Q  299 cttatgcaaataaataagtttttatatattattcataagtttgt 342  Q
    |||||||||||||||||| |||||||||||||||||||| ||||    
T  32975691 cttatgcaaataaataagcttttatatattattcataagcttgt 32975734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 299 - 341
Target Start/End: Complemental strand, 16706182 - 16706140
Alignment:
Q  299 cttatgcaaataaataagtttttatatattattcataagtttg 341  Q
    |||||||||||||||| |||||||| |||||||||||||||||    
T  16706182 cttatgcaaataaatatgtttttatgtattattcataagtttg 16706140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 299 - 340
Target Start/End: Original strand, 35453414 - 35453455
Alignment:
Q  299 cttatgcaaataaataagtttttatatattattcataagttt 340  Q
    |||||||||||||||||| |||||| ||||||||||||||||    
T  35453414 cttatgcaaataaataagcttttatgtattattcataagttt 35453455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 299 - 340
Target Start/End: Complemental strand, 38338932 - 38338891
Alignment:
Q  299 cttatgcaaataaataagtttttatatattattcataagttt 340  Q
    |||||||||||||||||||||||| |||||||| ||||||||    
T  38338932 cttatgcaaataaataagtttttaaatattatttataagttt 38338891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 299 - 340
Target Start/End: Original strand, 42102111 - 42102152
Alignment:
Q  299 cttatgcaaataaataagtttttatatattattcataagttt 340  Q
    ||||||||||||||||||||||||| ||||||| ||||||||    
T  42102111 cttatgcaaataaataagtttttatgtattatttataagttt 42102152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 300 - 340
Target Start/End: Original strand, 11988202 - 11988242
Alignment:
Q  300 ttatgcaaataaataagtttttatatattattcataagttt 340  Q
    |||||||||||||||||||||||| ||||||| ||||||||    
T  11988202 ttatgcaaataaataagtttttatgtattatttataagttt 11988242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 299 - 342
Target Start/End: Complemental strand, 2289968 - 2289925
Alignment:
Q  299 cttatgcaaataaataagtttttatatattattcataagtttgt 342  Q
    ||||||||||||||||||||||||| |||||| |||||| ||||    
T  2289968 cttatgcaaataaataagtttttatttattatccataagcttgt 2289925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 301 - 340
Target Start/End: Original strand, 12607086 - 12607125
Alignment:
Q  301 tatgcaaataaataagtttttatatattattcataagttt 340  Q
    ||||||||||||||||||||||| ||||||| ||||||||    
T  12607086 tatgcaaataaataagtttttatgtattatttataagttt 12607125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 299 - 342
Target Start/End: Original strand, 28879062 - 28879105
Alignment:
Q  299 cttatgcaaataaataagtttttatatattattcataagtttgt 342  Q
    |||||||||||||||||| |||||| ||||||||||||| ||||    
T  28879062 cttatgcaaataaataagcttttatgtattattcataagcttgt 28879105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 299 - 342
Target Start/End: Complemental strand, 32213104 - 32213061
Alignment:
Q  299 cttatgcaaataaataagtttttatatattattcataagtttgt 342  Q
    |||||||||||||||||| |||||| ||||||||||||| ||||    
T  32213104 cttatgcaaataaataagcttttatgtattattcataagcttgt 32213061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 300 - 342
Target Start/End: Original strand, 1089018 - 1089060
Alignment:
Q  300 ttatgcaaataaataagtttttatatattattcataagtttgt 342  Q
    ||||||||||||||||||||| || ||||||||||||| ||||    
T  1089018 ttatgcaaataaataagttttaatgtattattcataagcttgt 1089060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 300 - 342
Target Start/End: Original strand, 13265489 - 13265531
Alignment:
Q  300 ttatgcaaataaataagtttttatatattattcataagtttgt 342  Q
    ||||||||||||||||| |||||| ||||||||||||| ||||    
T  13265489 ttatgcaaataaataagcttttatgtattattcataagcttgt 13265531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 300 - 342
Target Start/End: Complemental strand, 24350600 - 24350558
Alignment:
Q  300 ttatgcaaataaataagtttttatatattattcataagtttgt 342  Q
    |||||||||||| |||| |||||||||||||||||||| ||||    
T  24350600 ttatgcaaataattaagcttttatatattattcataagcttgt 24350558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 300 - 342
Target Start/End: Original strand, 31459051 - 31459093
Alignment:
Q  300 ttatgcaaataaataagtttttatatattattcataagtttgt 342  Q
    ||||| |||||||||| ||||||||||||||| ||||||||||    
T  31459051 ttatgtaaataaataaatttttatatattatttataagtttgt 31459093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 299 - 340
Target Start/End: Complemental strand, 29243145 - 29243104
Alignment:
Q  299 cttatgcaaataaataagtttttatatattattcataagttt 340  Q
    |||||||||||||||||| |||||| ||||||| ||||||||    
T  29243145 cttatgcaaataaataagcttttatgtattatttataagttt 29243104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 306 - 342
Target Start/End: Complemental strand, 402163 - 402127
Alignment:
Q  306 aaataaataagtttttatatattattcataagtttgt 342  Q
    |||||||||||||||||| ||||||| ||||||||||    
T  402163 aaataaataagtttttatgtattatttataagtttgt 402127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 300 - 340
Target Start/End: Original strand, 3664141 - 3664181
Alignment:
Q  300 ttatgcaaataaataagtttttatatattattcataagttt 340  Q
    |||||||||||||||| ||||||| ||||||| ||||||||    
T  3664141 ttatgcaaataaataaatttttatgtattatttataagttt 3664181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 290 - 342
Target Start/End: Complemental strand, 16972448 - 16972396
Alignment:
Q  290 gcaaaataacttatgcaaataaataagtttttatatattattcataagtttgt 342  Q
    |||||| || || |||||||||||||| || ||| ||||||||||||||||||    
T  16972448 gcaaaacaatttttgcaaataaataagcttgtatgtattattcataagtttgt 16972396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 290 - 342
Target Start/End: Original strand, 32131435 - 32131487
Alignment:
Q  290 gcaaaataacttatgcaaataaataagtttttatatattattcataagtttgt 342  Q
    |||||| | |||||||||||||||||| ||||||  ||||||| |||||||||    
T  32131435 gcaaaacagcttatgcaaataaataagcttttatgcattattcctaagtttgt 32131487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 292 - 340
Target Start/End: Original strand, 42666995 - 42667043
Alignment:
Q  292 aaaataacttatgcaaataaataagtttttatatattattcataagttt 340  Q
    |||| |||||||||||||||| ||||| |||| ||||||| ||||||||    
T  42666995 aaaacaacttatgcaaataaacaagttgttatgtattatttataagttt 42667043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 24)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 292 - 340
Target Start/End: Original strand, 446449 - 446497
Alignment:
Q  292 aaaataacttatgcaaataaataagtttttatatattattcataagttt 340  Q
    |||| ||||||||||||||||||||||||||||||||||| ||||||||    
T  446449 aaaacaacttatgcaaataaataagtttttatatattatttataagttt 446497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 292 - 340
Target Start/End: Original strand, 32366147 - 32366195
Alignment:
Q  292 aaaataacttatgcaaataaataagtttttatatattattcataagttt 340  Q
    |||||||||||||||||||||||||||||||| ||||||| ||||||||    
T  32366147 aaaataacttatgcaaataaataagtttttatgtattatttataagttt 32366195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 300 - 340
Target Start/End: Complemental strand, 22422249 - 22422209
Alignment:
Q  300 ttatgcaaataaataagtttttatatattattcataagttt 340  Q
    |||||||||||||||||||||||||||||||| ||||||||    
T  22422249 ttatgcaaataaataagtttttatatattatttataagttt 22422209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 290 - 342
Target Start/End: Complemental strand, 34913481 - 34913429
Alignment:
Q  290 gcaaaataacttatgcaaataaataagtttttatatattattcataagtttgt 342  Q
    |||||| | |||||||||||||||||| |||||| ||||||||||||||||||    
T  34913481 gcaaaacagcttatgcaaataaataagcttttatgtattattcataagtttgt 34913429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 290 - 337
Target Start/End: Complemental strand, 27703549 - 27703502
Alignment:
Q  290 gcaaaataacttatgcaaataaataagtttttatatattattcataag 337  Q
    |||||| | |||||||||||||||||| ||||||||||||||||||||    
T  27703549 gcaaaacagcttatgcaaataaataagcttttatatattattcataag 27703502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 299 - 340
Target Start/End: Original strand, 40301356 - 40301397
Alignment:
Q  299 cttatgcaaataaataagtttttatatattattcataagttt 340  Q
    ||||||||||||||||||||||||| ||||||| ||||||||    
T  40301356 cttatgcaaataaataagtttttatgtattatttataagttt 40301397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 290 - 334
Target Start/End: Complemental strand, 7480993 - 7480949
Alignment:
Q  290 gcaaaataacttatgcaaataaataagtttttatatattattcat 334  Q
    |||||| |||||||||||||||||||  |||||||||||||||||    
T  7480993 gcaaaacaacttatgcaaataaataatattttatatattattcat 7480949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 290 - 342
Target Start/End: Original strand, 21788452 - 21788504
Alignment:
Q  290 gcaaaataacttatgcaaataaataagtttttatatattattcataagtttgt 342  Q
    |||||| | |||||||||||||||||| |||||| ||||||||||||| ||||    
T  21788452 gcaaaacatcttatgcaaataaataagcttttatttattattcataagcttgt 21788504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 290 - 342
Target Start/End: Complemental strand, 33321494 - 33321442
Alignment:
Q  290 gcaaaataacttatgcaaataaataagtttttatatattattcataagtttgt 342  Q
    |||||| ||||||||||||||| ||||||||||| ||||| ||||||| ||||    
T  33321494 gcaaaacaacttatgcaaataattaagtttttatgtattactcataagcttgt 33321442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 292 - 343
Target Start/End: Original strand, 1836997 - 1837048
Alignment:
Q  292 aaaataacttatgcaaataaataagtttttatatattattcataagtttgta 343  Q
    |||||| |||| |||||||||||||| |||| ||||||||||||| ||||||    
T  1836997 aaaatagcttaagcaaataaataagtatttacatattattcataaatttgta 1837048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 299 - 342
Target Start/End: Original strand, 8441477 - 8441520
Alignment:
Q  299 cttatgcaaataaataagtttttatatattattcataagtttgt 342  Q
    |||||||||||||||| |||||||| ||||||| ||||||||||    
T  8441477 cttatgcaaataaatatgtttttatgtattatttataagtttgt 8441520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 300 - 331
Target Start/End: Original strand, 26440096 - 26440127
Alignment:
Q  300 ttatgcaaataaataagtttttatatattatt 331  Q
    ||||||||||||||||||||||||||||||||    
T  26440096 ttatgcaaataaataagtttttatatattatt 26440127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 299 - 342
Target Start/End: Complemental strand, 42839402 - 42839359
Alignment:
Q  299 cttatgcaaataaataagtttttatatattattcataagtttgt 342  Q
    |||||| | |||||||||||||||| ||||||||||||||||||    
T  42839402 cttatgtagataaataagtttttatgtattattcataagtttgt 42839359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 300 - 342
Target Start/End: Complemental strand, 12683687 - 12683645
Alignment:
Q  300 ttatgcaaataaataagtttttatatattattcataagtttgt 342  Q
    ||||||||||||||||||||| || ||||||||||||| ||||    
T  12683687 ttatgcaaataaataagttttaatgtattattcataagcttgt 12683645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 290 - 340
Target Start/End: Complemental strand, 27881088 - 27881038
Alignment:
Q  290 gcaaaataacttatgcaaataaataagtttttatatattattcataagttt 340  Q
    |||||||| |||||||||||||||| ||| |||| ||||||| ||||||||    
T  27881088 gcaaaatagcttatgcaaataaatatgttattatgtattatttataagttt 27881038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 300 - 342
Target Start/End: Complemental strand, 29133748 - 29133706
Alignment:
Q  300 ttatgcaaataaataagtttttatatattattcataagtttgt 342  Q
    ||||||||||||||||  |||||| ||||||||||||||||||    
T  29133748 ttatgcaaataaataatcttttatgtattattcataagtttgt 29133706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 299 - 340
Target Start/End: Complemental strand, 10574243 - 10574202
Alignment:
Q  299 cttatgcaaataaataagtttttatatattattcataagttt 340  Q
    |||||||||||| |||||||||||| ||||||| ||||||||    
T  10574243 cttatgcaaatacataagtttttatctattatttataagttt 10574202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 299 - 340
Target Start/End: Original strand, 17531953 - 17531994
Alignment:
Q  299 cttatgcaaataaataagtttttatatattattcataagttt 340  Q
    ||||||||||||||||||||||||| ||||||  ||||||||    
T  17531953 cttatgcaaataaataagtttttatgtattatctataagttt 17531994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 292 - 325
Target Start/End: Complemental strand, 21788603 - 21788570
Alignment:
Q  292 aaaataacttatgcaaataaataagtttttatat 325  Q
    ||||||||||||||||||||||||| ||||||||    
T  21788603 aaaataacttatgcaaataaataagcttttatat 21788570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 292 - 340
Target Start/End: Original strand, 19683571 - 19683619
Alignment:
Q  292 aaaataacttatgcaaataaataagtttttatatattattcataagttt 340  Q
    ||||||||||||| |||||||| ||||||||| ||||||  ||||||||    
T  19683571 aaaataacttatgtaaataaatgagtttttatgtattatatataagttt 19683619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 292 - 336
Target Start/End: Complemental strand, 22898445 - 22898401
Alignment:
Q  292 aaaataacttatgcaaataaataagtttttatatattattcataa 336  Q
    |||||||||||||||||||||||  ||||||| ||||||| ||||    
T  22898445 aaaataacttatgcaaataaatacatttttatgtattatttataa 22898401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 290 - 342
Target Start/End: Complemental strand, 25836803 - 25836751
Alignment:
Q  290 gcaaaataacttatgcaaataaataagtttttatatattattcataagtttgt 342  Q
    |||||| | |||||||||||||||| | |||||| ||||||||||||| ||||    
T  25836803 gcaaaacagcttatgcaaataaatatgcttttatgtattattcataagcttgt 25836751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 299 - 331
Target Start/End: Complemental strand, 27709750 - 27709718
Alignment:
Q  299 cttatgcaaataaataagtttttatatattatt 331  Q
    |||||||||||||||||| ||||||||||||||    
T  27709750 cttatgcaaataaataagcttttatatattatt 27709718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 290 - 342
Target Start/End: Complemental strand, 33321403 - 33321351
Alignment:
Q  290 gcaaaataacttatgcaaataaataagtttttatatattattcataagtttgt 342  Q
    |||||| ||||| |||||||||||||| |||||| | ||||||||||| ||||    
T  33321403 gcaaaacaacttgtgcaaataaataagcttttatgtcttattcataagcttgt 33321351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 24)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 290 - 342
Target Start/End: Original strand, 41003382 - 41003434
Alignment:
Q  290 gcaaaataacttatgcaaataaataagtttttatatattattcataagtttgt 342  Q
    |||||| ||||||||||||||||||||||||||| ||||||| ||||||||||    
T  41003382 gcaaaaaaacttatgcaaataaataagtttttatgtattatttataagtttgt 41003434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 290 - 337
Target Start/End: Complemental strand, 35897714 - 35897667
Alignment:
Q  290 gcaaaataacttatgcaaataaataagtttttatatattattcataag 337  Q
    |||||| ||||||||||||||||||||||||||| |||||||||||||    
T  35897714 gcaaaacaacttatgcaaataaataagtttttatttattattcataag 35897667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 292 - 340
Target Start/End: Original strand, 17348877 - 17348925
Alignment:
Q  292 aaaataacttatgcaaataaataagtttttatatattattcataagttt 340  Q
    |||| ||||||||||||||||||||||||||| ||||||| ||||||||    
T  17348877 aaaacaacttatgcaaataaataagtttttatctattatttataagttt 17348925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 299 - 343
Target Start/End: Complemental strand, 51409789 - 51409745
Alignment:
Q  299 cttatgcaaataaataagtttttatatattattcataagtttgta 343  Q
    ||||||||||||||||||||| ||| |||||||||||||||||||    
T  51409789 cttatgcaaataaataagtttgtatgtattattcataagtttgta 51409745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 301 - 340
Target Start/End: Original strand, 8410155 - 8410194
Alignment:
Q  301 tatgcaaataaataagtttttatatattattcataagttt 340  Q
    ||||||||||||||||||||||| ||||||||||||||||    
T  8410155 tatgcaaataaataagtttttatgtattattcataagttt 8410194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 291 - 342
Target Start/End: Original strand, 15631900 - 15631951
Alignment:
Q  291 caaaataacttatgcaaataaataagtttttatatattattcataagtttgt 342  Q
    ||||| ||||||| ||||||||||||||||||| ||||||| ||||||||||    
T  15631900 caaaacaacttatacaaataaataagtttttatgtattatttataagtttgt 15631951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 299 - 342
Target Start/End: Complemental strand, 36423063 - 36423020
Alignment:
Q  299 cttatgcaaataaataagtttttatatattattcataagtttgt 342  Q
    |||||||||||||||||| |||||| ||||||||||||||||||    
T  36423063 cttatgcaaataaataagcttttatttattattcataagtttgt 36423020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 290 - 342
Target Start/End: Original strand, 391163 - 391216
Alignment:
Q  290 gcaaaataacttatgcaaataaataag-tttttatatattattcataagtttgt 342  Q
    |||||| | |||||||||||||||||| ||||||||||||||||||||| ||||    
T  391163 gcaaaacagcttatgcaaataaataagctttttatatattattcataagcttgt 391216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 297 - 342
Target Start/End: Original strand, 10082252 - 10082297
Alignment:
Q  297 aacttatgcaaataaataagtttttatatattattcataagtttgt 342  Q
    ||||||||||||||||||||||||||| | ||||| ||||||||||    
T  10082252 aacttatgcaaataaataagtttttatgtgttattgataagtttgt 10082297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 299 - 340
Target Start/End: Complemental strand, 32497353 - 32497312
Alignment:
Q  299 cttatgcaaataaataagtttttatatattattcataagttt 340  Q
    ||||||||||||||||||||||||| ||||||| ||||||||    
T  32497353 cttatgcaaataaataagtttttatgtattatttataagttt 32497312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 290 - 342
Target Start/End: Original strand, 4068110 - 4068162
Alignment:
Q  290 gcaaaataacttatgcaaataaataagtttttatatattattcataagtttgt 342  Q
    |||||||| ||| |||||||||||||| |||||| ||||||||||||| ||||    
T  4068110 gcaaaatagcttgtgcaaataaataagcttttatgtattattcataagcttgt 4068162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 292 - 340
Target Start/End: Original strand, 5347152 - 5347200
Alignment:
Q  292 aaaataacttatgcaaataaataagtttttatatattattcataagttt 340  Q
    |||||||||||||||||||||||  ||||||| ||||||| ||||||||    
T  5347152 aaaataacttatgcaaataaatacatttttatgtattatttataagttt 5347200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 292 - 340
Target Start/End: Complemental strand, 13412541 - 13412493
Alignment:
Q  292 aaaataacttatgcaaataaataagtttttatatattattcataagttt 340  Q
    ||||||||||||||||||| |||| ||||||| ||||||| ||||||||    
T  13412541 aaaataacttatgcaaatacataaatttttatgtattatttataagttt 13412493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 292 - 340
Target Start/End: Complemental strand, 15235249 - 15235201
Alignment:
Q  292 aaaataacttatgcaaataaataagtttttatatattattcataagttt 340  Q
    |||||| |||||| |||||||||||||||||| ||||||| ||||||||    
T  15235249 aaaatagcttatgtaaataaataagtttttatgtattatttataagttt 15235201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 299 - 343
Target Start/End: Complemental strand, 22593489 - 22593445
Alignment:
Q  299 cttatgcaaataaataagtttttatatattattcataagtttgta 343  Q
    ||||||||||||||||| ||||||| ||||||||||||| |||||    
T  22593489 cttatgcaaataaataaatttttatgtattattcataagcttgta 22593445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 299 - 340
Target Start/End: Complemental strand, 5243485 - 5243444
Alignment:
Q  299 cttatgcaaataaataagtttttatatattattcataagttt 340  Q
    ||||||||||||||||||||||| | ||||||| ||||||||    
T  5243485 cttatgcaaataaataagtttttgtgtattatttataagttt 5243444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 290 - 342
Target Start/End: Complemental strand, 9572876 - 9572823
Alignment:
Q  290 gcaaaataacttatgcaaataaataag-tttttatatattattcataagtttgt 342  Q
    |||||| | ||| |||||||||||||| ||||||| ||||||||||||||||||    
T  9572876 gcaaaacagcttttgcaaataaataagctttttatttattattcataagtttgt 9572823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 299 - 340
Target Start/End: Original strand, 15791388 - 15791429
Alignment:
Q  299 cttatgcaaataaataagtttttatatattattcataagttt 340  Q
    |||||| |||||||||||||||||| ||||||| ||||||||    
T  15791388 cttatgtaaataaataagtttttatgtattatttataagttt 15791429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 299 - 340
Target Start/End: Complemental strand, 17628506 - 17628465
Alignment:
Q  299 cttatgcaaataaataagtttttatatattattcataagttt 340  Q
    ||||| ||||||||||||||||||| ||||||| ||||||||    
T  17628506 cttatacaaataaataagtttttatgtattatttataagttt 17628465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 299 - 340
Target Start/End: Original strand, 20169268 - 20169309
Alignment:
Q  299 cttatgcaaataaataagtttttatatattattcataagttt 340  Q
    |||||||||||||||||| |||||| ||||||| ||||||||    
T  20169268 cttatgcaaataaataagcttttatgtattatttataagttt 20169309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 290 - 342
Target Start/End: Complemental strand, 10850162 - 10850110
Alignment:
Q  290 gcaaaataacttatgcaaataaataagtttttatatattattcataagtttgt 342  Q
    ||||||||  || |||||||||||||| |||||| ||||||||||||| ||||    
T  10850162 gcaaaatagtttttgcaaataaataagcttttatgtattattcataaggttgt 10850110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 302 - 334
Target Start/End: Original strand, 13038954 - 13038986
Alignment:
Q  302 atgcaaataaataagtttttatatattattcat 334  Q
    ||||||||||||||| |||||||||||||||||    
T  13038954 atgcaaataaataagcttttatatattattcat 13038986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 299 - 331
Target Start/End: Complemental strand, 31378833 - 31378801
Alignment:
Q  299 cttatgcaaataaataagtttttatatattatt 331  Q
    |||||||||||||||||| ||||||||||||||    
T  31378833 cttatgcaaataaataagcttttatatattatt 31378801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 302 - 342
Target Start/End: Original strand, 39941377 - 39941417
Alignment:
Q  302 atgcaaataaataagtttttatatattattcataagtttgt 342  Q
    |||||||||||| ||||||||| ||||||||||||| ||||    
T  39941377 atgcaaataaatgagtttttatgtattattcataagcttgt 39941417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 22)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 292 - 342
Target Start/End: Complemental strand, 24842196 - 24842146
Alignment:
Q  292 aaaataacttatgcaaataaataagtttttatatattattcataagtttgt 342  Q
    |||| ||||||||||||||||||| ||||||| ||||||||||||||||||    
T  24842196 aaaacaacttatgcaaataaataaatttttatgtattattcataagtttgt 24842146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 292 - 340
Target Start/End: Complemental strand, 4257390 - 4257342
Alignment:
Q  292 aaaataacttatgcaaataaataagtttttatatattattcataagttt 340  Q
    |||| ||||||||||||||||||||||||||| ||||||| ||||||||    
T  4257390 aaaacaacttatgcaaataaataagtttttatgtattatttataagttt 4257342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 290 - 340
Target Start/End: Original strand, 21296761 - 21296811
Alignment:
Q  290 gcaaaataacttatgcaaataaataagtttttatatattattcataagttt 340  Q
    |||||| || |||||||||||||||||||||||| ||||||||||| ||||    
T  21296761 gcaaaacaatttatgcaaataaataagtttttatctattattcatacgttt 21296811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 290 - 342
Target Start/End: Complemental strand, 22809285 - 22809232
Alignment:
Q  290 gcaaaataacttatgcaaataaataag-tttttatatattattcataagtttgt 342  Q
    |||||| | |||||||||||||||||| ||||||||||||||||||||| ||||    
T  22809285 gcaaaacagcttatgcaaataaataagctttttatatattattcataagcttgt 22809232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 297 - 342
Target Start/End: Complemental strand, 24841471 - 24841426
Alignment:
Q  297 aacttatgcaaataaataagtttttatatattattcataagtttgt 342  Q
    |||||| |||||||||||||||| ||||||||||| ||||||||||    
T  24841471 aacttaagcaaataaataagtttgtatatattatttataagtttgt 24841426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 292 - 336
Target Start/End: Complemental strand, 28623323 - 28623279
Alignment:
Q  292 aaaataacttatgcaaataaataagtttttatatattattcataa 336  Q
    |||| ||||||||||||||||||||||||||| ||||||| ||||    
T  28623323 aaaacaacttatgcaaataaataagtttttatgtattatttataa 28623279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 290 - 342
Target Start/End: Complemental strand, 40581168 - 40581116
Alignment:
Q  290 gcaaaataacttatgcaaataaataagtttttatatattattcataagtttgt 342  Q
    |||||| |||||||||||||||||||| |||||| ||||||| ||||| ||||    
T  40581168 gcaaaacaacttatgcaaataaataagcttttatgtattattaataagcttgt 40581116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 290 - 342
Target Start/End: Complemental strand, 53218131 - 53218079
Alignment:
Q  290 gcaaaataacttatgcaaataaataagtttttatatattattcataagtttgt 342  Q
    |||||| ||||||||| |||||||||| |||||| ||||||||||||| ||||    
T  53218131 gcaaaacaacttatgcgaataaataagattttatgtattattcataagcttgt 53218079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 292 - 339
Target Start/End: Original strand, 3876203 - 3876249
Alignment:
Q  292 aaaataacttatgcaaataaataagtttttatatattattcataagtt 339  Q
    |||||| ||||||||||||||||||||||||||| | |||||||||||    
T  3876203 aaaatagcttatgcaaataaataagtttttatat-taattcataagtt 3876249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 300 - 339
Target Start/End: Complemental strand, 30199037 - 30198998
Alignment:
Q  300 ttatgcaaataaataagtttttatatattattcataagtt 339  Q
    |||||||||||||||||||||||| | |||||||||||||    
T  30199037 ttatgcaaataaataagtttttatgtgttattcataagtt 30198998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 300 - 342
Target Start/End: Complemental strand, 5129896 - 5129854
Alignment:
Q  300 ttatgcaaataaataagtttttatatattattcataagtttgt 342  Q
    ||||||||||||||||||||| || ||||||||||||| ||||    
T  5129896 ttatgcaaataaataagttttaatgtattattcataagcttgt 5129854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 292 - 342
Target Start/End: Original strand, 10667395 - 10667445
Alignment:
Q  292 aaaataacttatgcaaataaataagtttttatatattattcataagtttgt 342  Q
    ||||||||||| ||||||||||||| || ||| ||||||||||||| ||||    
T  10667395 aaaataacttacgcaaataaataagcttatatgtattattcataagcttgt 10667445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 300 - 342
Target Start/End: Complemental strand, 41601412 - 41601370
Alignment:
Q  300 ttatgcaaataaataagtttttatatattattcataagtttgt 342  Q
    |||||||||||||| ||||||||| |||||||| |||||||||    
T  41601412 ttatgcaaataaatcagtttttatgtattattcttaagtttgt 41601370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 302 - 336
Target Start/End: Complemental strand, 42956258 - 42956224
Alignment:
Q  302 atgcaaataaataagtttttatatattattcataa 336  Q
    |||||||||||||||||||||| ||||||||||||    
T  42956258 atgcaaataaataagtttttatgtattattcataa 42956224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 292 - 342
Target Start/End: Original strand, 51409390 - 51409440
Alignment:
Q  292 aaaataacttatgcaaataaataagtttttatatattattcataagtttgt 342  Q
    |||||| |||||||||||||||||  |||||| |||||||||| |||||||    
T  51409390 aaaatagcttatgcaaataaataatcttttatttattattcatgagtttgt 51409440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 305 - 342
Target Start/End: Original strand, 3845865 - 3845902
Alignment:
Q  305 caaataaataagtttttatatattattcataagtttgt 342  Q
    |||||||||||| |||||||||||||||||||| ||||    
T  3845865 caaataaataagcttttatatattattcataagcttgt 3845902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 297 - 342
Target Start/End: Original strand, 7292682 - 7292727
Alignment:
Q  297 aacttatgcaaataaataagtttttatatattattcataagtttgt 342  Q
    |||||||||||||| ||||| | |||| ||||||||||||||||||    
T  7292682 aacttatgcaaatacataagctcttatgtattattcataagtttgt 7292727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 290 - 331
Target Start/End: Complemental strand, 33946633 - 33946592
Alignment:
Q  290 gcaaaataacttatgcaaataaataagtttttatatattatt 331  Q
    |||||||| |||||||||||||||||| |||||| |||||||    
T  33946633 gcaaaatagcttatgcaaataaataagcttttatttattatt 33946592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 300 - 337
Target Start/End: Original strand, 36182508 - 36182545
Alignment:
Q  300 ttatgcaaataaataagtttttatatattattcataag 337  Q
    ||||| |||||||||||||||||| |||||||||||||    
T  36182508 ttatgtaaataaataagtttttatttattattcataag 36182545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 290 - 342
Target Start/End: Original strand, 11528886 - 11528938
Alignment:
Q  290 gcaaaataacttatgcaaataaataagtttttatatattattcataagtttgt 342  Q
    |||||| |||||||| || |||||||| |||||| |||||||||||| |||||    
T  11528886 gcaaaacaacttatgtaagtaaataagcttttatgtattattcataaatttgt 11528938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 300 - 340
Target Start/End: Complemental strand, 24521286 - 24521246
Alignment:
Q  300 ttatgcaaataaataagtttttatatattattcataagttt 340  Q
    ||||||||||||||||| |||||| ||||||||| ||||||    
T  24521286 ttatgcaaataaataagattttatgtattattcacaagttt 24521246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 290 - 342
Target Start/End: Complemental strand, 32901239 - 32901187
Alignment:
Q  290 gcaaaataacttatgcaaataaataagtttttatatattattcataagtttgt 342  Q
    |||||| |||||||| ||||||||||| |||||| ||||||||| || |||||    
T  32901239 gcaaaacaacttatgtaaataaataagcttttatttattattcacaaatttgt 32901187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 21)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 290 - 343
Target Start/End: Original strand, 30533975 - 30534028
Alignment:
Q  290 gcaaaataacttatgcaaataaataagtttttatatattattcataagtttgta 343  Q
    |||||| | |||||||||||||||||| |||||| |||||||||||||||||||    
T  30533975 gcaaaacagcttatgcaaataaataagcttttatgtattattcataagtttgta 30534028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 299 - 343
Target Start/End: Original strand, 10054385 - 10054429
Alignment:
Q  299 cttatgcaaataaataagtttttatatattattcataagtttgta 343  Q
    |||||||||||||||||| |||||| |||||||||||||||||||    
T  10054385 cttatgcaaataaataagcttttatgtattattcataagtttgta 10054429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 294 - 342
Target Start/End: Complemental strand, 21891425 - 21891377
Alignment:
Q  294 aataacttatgcaaataaataagtttttatatattattcataagtttgt 342  Q
    |||| |||||||||||||||||||||| |||||||||||||||| ||||    
T  21891425 aatagcttatgcaaataaataagttttgatatattattcataagcttgt 21891377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 292 - 339
Target Start/End: Original strand, 32675829 - 32675875
Alignment:
Q  292 aaaataacttatgcaaataaataagtttttatatattattcataagtt 339  Q
    |||||||||||||||||||||||||||||||||| | |||||||||||    
T  32675829 aaaataacttatgcaaataaataagtttttatat-taattcataagtt 32675875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 292 - 342
Target Start/End: Original strand, 23239244 - 23239294
Alignment:
Q  292 aaaataacttatgcaaataaataagtttttatatattattcataagtttgt 342  Q
    |||||||||||| |||||||||||| |||||| ||||||||||||| ||||    
T  23239244 aaaataacttatacaaataaataagcttttatttattattcataagcttgt 23239294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 292 - 325
Target Start/End: Original strand, 2040121 - 2040154
Alignment:
Q  292 aaaataacttatgcaaataaataagtttttatat 325  Q
    ||||||||||||||||||||||||||||||||||    
T  2040121 aaaataacttatgcaaataaataagtttttatat 2040154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 292 - 340
Target Start/End: Original strand, 1468173 - 1468221
Alignment:
Q  292 aaaataacttatgcaaataaataagtttttatatattattcataagttt 340  Q
    |||||| ||||||||||||||||||||||||| ||||||| ||| ||||    
T  1468173 aaaatagcttatgcaaataaataagtttttatgtattatttataggttt 1468221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 290 - 342
Target Start/End: Complemental strand, 2040277 - 2040225
Alignment:
Q  290 gcaaaataacttatgcaaataaataagtttttatatattattcataagtttgt 342  Q
    |||||| |||||||  ||||||||||| |||||| ||||||||||||||||||    
T  2040277 gcaaaacaacttatataaataaataagcttttatttattattcataagtttgt 2040225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 300 - 340
Target Start/End: Complemental strand, 22816666 - 22816626
Alignment:
Q  300 ttatgcaaataaataagtttttatatattattcataagttt 340  Q
    |||||||||||||||||||||||| || |||||||||||||    
T  22816666 ttatgcaaataaataagtttttatgtaatattcataagttt 22816626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 297 - 337
Target Start/End: Complemental strand, 32675973 - 32675933
Alignment:
Q  297 aacttatgcaaataaataagtttttatatattattcataag 337  Q
    |||||||||||||||||||| |||||| |||||||||||||    
T  32675973 aacttatgcaaataaataagcttttatttattattcataag 32675933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 299 - 342
Target Start/End: Complemental strand, 2034311 - 2034268
Alignment:
Q  299 cttatgcaaataaataagtttttatatattattcataagtttgt 342  Q
    |||||||||||||||||| |||||| ||||||| ||||||||||    
T  2034311 cttatgcaaataaataagcttttatgtattatttataagtttgt 2034268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 294 - 336
Target Start/End: Complemental strand, 9582543 - 9582501
Alignment:
Q  294 aataacttatgcaaataaataagtttttatatattattcataa 336  Q
    |||||||||||||||||||||| ||||||| ||||||| ||||    
T  9582543 aataacttatgcaaataaataaatttttatgtattatttataa 9582501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 297 - 331
Target Start/End: Complemental strand, 17300822 - 17300788
Alignment:
Q  297 aacttatgcaaataaataagtttttatatattatt 331  Q
    ||||||||||||||||||||||||||| |||||||    
T  17300822 aacttatgcaaataaataagtttttatgtattatt 17300788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 292 - 342
Target Start/End: Complemental strand, 34223614 - 34223564
Alignment:
Q  292 aaaataacttatgcaaataaataagtttttatatattattcataagtttgt 342  Q
    |||| |||||||| |||||||||||||||||| | ||||| ||||||||||    
T  34223614 aaaacaacttatgaaaataaataagtttttatgtgttatttataagtttgt 34223564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 291 - 340
Target Start/End: Original strand, 4272378 - 4272427
Alignment:
Q  291 caaaataacttatgcaaataaataagtttttatatattattcataagttt 340  Q
    ||||| || |||||||||||||||| ||||||| |||||| |||||||||    
T  4272378 caaaacaatttatgcaaataaataactttttatgtattatacataagttt 4272427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 292 - 325
Target Start/End: Complemental strand, 6776954 - 6776921
Alignment:
Q  292 aaaataacttatgcaaataaataagtttttatat 325  Q
    |||||| |||||||||||||||||||||||||||    
T  6776954 aaaatagcttatgcaaataaataagtttttatat 6776921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 299 - 340
Target Start/End: Complemental strand, 10184411 - 10184370
Alignment:
Q  299 cttatgcaaataaataagtttttatatattattcataagttt 340  Q
    |||||| |||||||||||||||||| ||||||| ||||||||    
T  10184411 cttatgtaaataaataagtttttatctattatttataagttt 10184370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 300 - 337
Target Start/End: Complemental strand, 28758402 - 28758365
Alignment:
Q  300 ttatgcaaataaataagtttttatatattattcataag 337  Q
    |||||||||||||||| ||||||| |||||||||||||    
T  28758402 ttatgcaaataaataaatttttatgtattattcataag 28758365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 299 - 336
Target Start/End: Complemental strand, 32615496 - 32615459
Alignment:
Q  299 cttatgcaaataaataagtttttatatattattcataa 336  Q
    ||||||||||||||||||||||||| ||||||| ||||    
T  32615496 cttatgcaaataaataagtttttatgtattatttataa 32615459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 290 - 342
Target Start/End: Original strand, 6758622 - 6758674
Alignment:
Q  290 gcaaaataacttatgcaaataaataagtttttatatattattcataagtttgt 342  Q
    |||||| |||||||||||||||||||| |||| | |||||| |||||| ||||    
T  6758622 gcaaaacaacttatgcaaataaataagcttttgtttattatccataagcttgt 6758674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 290 - 342
Target Start/End: Complemental strand, 29623568 - 29623516
Alignment:
Q  290 gcaaaataacttatgcaaataaataagtttttatatattattcataagtttgt 342  Q
    |||||| |||||||||||||||||||  |||||| ||||||| || |||||||    
T  29623568 gcaaaacaacttatgcaaataaataaccttttatttattatttatgagtttgt 29623516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 32)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 290 - 354
Target Start/End: Complemental strand, 7111074 - 7111007
Alignment:
Q  290 gcaaaataacttatgcaaataaataagtttttatatattattcataagtttgt---agtttatgaaaa 354  Q
    |||||||||| |||||||||||||||||| |||| ||||||||||||| ||||   ||||||||||||    
T  7111074 gcaaaataacctatgcaaataaataagttcttatttattattcataagattgtcaaagtttatgaaaa 7111007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 297 - 342
Target Start/End: Original strand, 7984107 - 7984152
Alignment:
Q  297 aacttatgcaaataaataagtttttatatattattcataagtttgt 342  Q
    ||||||||||||||| ||||||||||| ||||||||||||||||||    
T  7984107 aacttatgcaaataactaagtttttatgtattattcataagtttgt 7984152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 299 - 342
Target Start/End: Complemental strand, 2878758 - 2878715
Alignment:
Q  299 cttatgcaaataaataagtttttatatattattcataagtttgt 342  Q
    |||||||||||||||||| |||||| ||||||||||||||||||    
T  2878758 cttatgcaaataaataagcttttatctattattcataagtttgt 2878715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 300 - 342
Target Start/End: Original strand, 26003002 - 26003044
Alignment:
Q  300 ttatgcaaataaataagtttttatatattattcataagtttgt 342  Q
    |||||||||||||||||||||||| ||||||| ||||||||||    
T  26003002 ttatgcaaataaataagtttttatgtattatttataagtttgt 26003044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 300 - 342
Target Start/End: Complemental strand, 29922270 - 29922228
Alignment:
Q  300 ttatgcaaataaataagtttttatatattattcataagtttgt 342  Q
    |||||||||||||||||||||||| ||||||||||||| ||||    
T  29922270 ttatgcaaataaataagtttttatgtattattcataagcttgt 29922228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 292 - 342
Target Start/End: Complemental strand, 36106828 - 36106778
Alignment:
Q  292 aaaataacttatgcaaataaataagtttttatatattattcataagtttgt 342  Q
    ||||||||||| |||||||||||||||||||| ||| |||||||| |||||    
T  36106828 aaaataacttacgcaaataaataagtttttatgtatgattcataaatttgt 36106778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 297 - 342
Target Start/End: Original strand, 1473358 - 1473403
Alignment:
Q  297 aacttatgcaaataaataagtttttatatattattcataagtttgt 342  Q
    |||||||||||||||||||| |||||| ||||||||||||| ||||    
T  1473358 aacttatgcaaataaataagcttttatgtattattcataagcttgt 1473403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 290 - 343
Target Start/End: Original strand, 22573648 - 22573701
Alignment:
Q  290 gcaaaataacttatgcaaataaataagtttttatatattattcataagtttgta 343  Q
    |||||| ||||||||||||||||| ||||||| | ||||||| |||||||||||    
T  22573648 gcaaaacaacttatgcaaataaatgagtttttttgtattatttataagtttgta 22573701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 299 - 340
Target Start/End: Original strand, 33757092 - 33757133
Alignment:
Q  299 cttatgcaaataaataagtttttatatattattcataagttt 340  Q
    ||||||||||||||||||||||||| ||||||| ||||||||    
T  33757092 cttatgcaaataaataagtttttatgtattatttataagttt 33757133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 291 - 342
Target Start/End: Original strand, 589145 - 589197
Alignment:
Q  291 caaaataacttatgcaaataaataagtttttatata-ttattcataagtttgt 342  Q
    |||||||  ||||||||||||||||||||||||||| ||| ||||||||||||    
T  589145 caaaatagtttatgcaaataaataagtttttatatatttactcataagtttgt 589197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 292 - 340
Target Start/End: Original strand, 2531323 - 2531371
Alignment:
Q  292 aaaataacttatgcaaataaataagtttttatatattattcataagttt 340  Q
    |||| |||||||||||||||||||||| |||| ||||||| ||||||||    
T  2531323 aaaacaacttatgcaaataaataagttgttatgtattatttataagttt 2531371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 292 - 340
Target Start/End: Original strand, 15122542 - 15122590
Alignment:
Q  292 aaaataacttatgcaaataaataagtttttatatattattcataagttt 340  Q
    |||| |||||||||||| |||||||||||||| ||||||| ||||||||    
T  15122542 aaaacaacttatgcaaagaaataagtttttatgtattatttataagttt 15122590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 292 - 340
Target Start/End: Complemental strand, 15709980 - 15709932
Alignment:
Q  292 aaaataacttatgcaaataaataagtttttatatattattcataagttt 340  Q
    |||| ||||||||||||||||||||||||| | ||||||| ||||||||    
T  15709980 aaaacaacttatgcaaataaataagtttttctgtattatttataagttt 15709932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 292 - 336
Target Start/End: Original strand, 16722024 - 16722068
Alignment:
Q  292 aaaataacttatgcaaataaataagtttttatatattattcataa 336  Q
    ||||||| |||||||||||||||||||||||| ||||||| ||||    
T  16722024 aaaataatttatgcaaataaataagtttttatgtattatttataa 16722068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 297 - 337
Target Start/End: Original strand, 17657244 - 17657284
Alignment:
Q  297 aacttatgcaaataaataagtttttatatattattcataag 337  Q
    |||||||||||||||||||| |||||| |||||||||||||    
T  17657244 aacttatgcaaataaataagcttttatgtattattcataag 17657284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 299 - 342
Target Start/End: Original strand, 40697005 - 40697048
Alignment:
Q  299 cttatgcaaataaataagtttttatatattattcataagtttgt 342  Q
    ||||||||||||||||||||||||| ||||||| ||||| ||||    
T  40697005 cttatgcaaataaataagtttttatgtattatttataagcttgt 40697048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 300 - 342
Target Start/End: Original strand, 12467269 - 12467311
Alignment:
Q  300 ttatgcaaataaataagtttttatatattattcataagtttgt 342  Q
    ||||||||||||||||| |||||| ||||||||||||| ||||    
T  12467269 ttatgcaaataaataagcttttatgtattattcataagcttgt 12467311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 292 - 342
Target Start/End: Complemental strand, 12987103 - 12987053
Alignment:
Q  292 aaaataacttatgcaaataaataagtttttatatattattcataagtttgt 342  Q
    |||| |||||||||||||||||||| |||||| |||| |||||||| ||||    
T  12987103 aaaagaacttatgcaaataaataagcttttatgtattgttcataagcttgt 12987053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 292 - 342
Target Start/End: Complemental strand, 13060691 - 13060641
Alignment:
Q  292 aaaataacttatgcaaataaataagtttttatatattattcataagtttgt 342  Q
    |||| |||||||||||||||||||| |||||| |||| |||||||| ||||    
T  13060691 aaaagaacttatgcaaataaataagcttttatgtattgttcataagcttgt 13060641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 290 - 336
Target Start/End: Original strand, 17128273 - 17128319
Alignment:
Q  290 gcaaaataacttatgcaaataaataagtttttatatattattcataa 336  Q
    |||||| | |||||||||||||||||| |||||| ||||||||||||    
T  17128273 gcaaaacagcttatgcaaataaataagcttttatgtattattcataa 17128319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 292 - 342
Target Start/End: Complemental strand, 25332327 - 25332277
Alignment:
Q  292 aaaataacttatgcaaataaataagtttttatatattattcataagtttgt 342  Q
    |||||| ||||||||||||||||||  || |||||||||| ||||||||||    
T  25332327 aaaatagcttatgcaaataaataagcattaatatattatttataagtttgt 25332277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 300 - 342
Target Start/End: Original strand, 41534628 - 41534670
Alignment:
Q  300 ttatgcaaataaataagtttttatatattattcataagtttgt 342  Q
    ||||||||||||||||| |||||| ||||||||||||| ||||    
T  41534628 ttatgcaaataaataagcttttatgtattattcataagcttgt 41534670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 290 - 343
Target Start/End: Original strand, 11991300 - 11991353
Alignment:
Q  290 gcaaaataacttatgcaaataaataagtttttatatattattcataagtttgta 343  Q
    |||||| |||||||| ||||||||||| |||||| ||||||| ||||| |||||    
T  11991300 gcaaaacaacttatgtaaataaataagcttttatgtattatttataagcttgta 11991353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 299 - 340
Target Start/End: Complemental strand, 33667474 - 33667433
Alignment:
Q  299 cttatgcaaataaataagtttttatatattattcataagttt 340  Q
    ||||||||||||||||||||||||| ||||||| | ||||||    
T  33667474 cttatgcaaataaataagtttttatgtattatttacaagttt 33667433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 300 - 332
Target Start/End: Original strand, 10274279 - 10274311
Alignment:
Q  300 ttatgcaaataaataagtttttatatattattc 332  Q
    ||||||||||||||||| |||||||||||||||    
T  10274279 ttatgcaaataaataagattttatatattattc 10274311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 290 - 342
Target Start/End: Original strand, 15413987 - 15414039
Alignment:
Q  290 gcaaaataacttatgcaaataaataagtttttatatattattcataagtttgt 342  Q
    |||||| | ||||||||||||||||||| || || ||||||| ||||||||||    
T  15413987 gcaaaacagcttatgcaaataaataagtattaatgtattattgataagtttgt 15414039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 292 - 340
Target Start/End: Original strand, 17668397 - 17668445
Alignment:
Q  292 aaaataacttatgcaaataaataagtttttatatattattcataagttt 340  Q
    |||| |||||||||||||||||| || ||||| ||||||| ||||||||    
T  17668397 aaaacaacttatgcaaataaataggtgtttatgtattatttataagttt 17668445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 290 - 342
Target Start/End: Complemental strand, 22202027 - 22201975
Alignment:
Q  290 gcaaaataacttatgcaaataaataagtttttatatattattcataagtttgt 342  Q
    |||||| | |||||| ||||||||||| |||||| ||||||||||||| ||||    
T  22202027 gcaaaacagcttatgtaaataaataagcttttatgtattattcataagcttgt 22201975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 292 - 339
Target Start/End: Complemental strand, 35536990 - 35536945
Alignment:
Q  292 aaaataacttatgcaaataaataagtttttatatattattcataagtt 339  Q
    |||||| |||||||||||||||||| |||  |||||||||||||||||    
T  35536990 aaaatagcttatgcaaataaataagcttt--tatattattcataagtt 35536945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 297 - 325
Target Start/End: Complemental strand, 42478967 - 42478939
Alignment:
Q  297 aacttatgcaaataaataagtttttatat 325  Q
    |||||||||||||||||||||||||||||    
T  42478967 aacttatgcaaataaataagtttttatat 42478939  T

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Target: chr5; HSP #31
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 290 - 342
Target Start/End: Original strand, 42852017 - 42852069
Alignment:
Q  290 gcaaaataacttatgcaaataaataagtttttatatattattcataagtttgt 342  Q
    |||||| | ||||| |||||||||||| |||||| ||||||||||||| ||||    
T  42852017 gcaaaacagcttattcaaataaataagcttttatgtattattcataagcttgt 42852069  T

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Target: chr5; HSP #32
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 290 - 342
Target Start/End: Original strand, 43318998 - 43319050
Alignment:
Q  290 gcaaaataacttatgcaaataaataagtttttatatattattcataagtttgt 342  Q
    |||||| |||||||||||||||||| || ||||| ||||||| ||||| ||||    
T  43318998 gcaaaacaacttatgcaaataaatatgtctttatgtattatttataagcttgt 43319050  T

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Target: scaffold0157 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0157
Description:

Target: scaffold0157; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 290 - 342
Target Start/End: Original strand, 24740 - 24792
Alignment:
Q  290 gcaaaataacttatgcaaataaataagtttttatatattattcataagtttgt 342  Q
    |||||| | |||||||||||||||||| |||||| ||||||||||||| ||||    
T  24740 gcaaaacagcttatgcaaataaataagcttttatgtattattcataagcttgt 24792  T

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Target: scaffold0006 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 292 - 340
Target Start/End: Complemental strand, 279080 - 279032
Alignment:
Q  292 aaaataacttatgcaaataaataagtttttatatattattcataagttt 340  Q
    ||||||||||||||||||| |||| ||||||| ||||||| ||||||||    
T  279080 aaaataacttatgcaaatacataaatttttatgtattatttataagttt 279032  T

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Target: scaffold1367 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: scaffold1367
Description:

Target: scaffold1367; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 291 - 342
Target Start/End: Original strand, 1054 - 1105
Alignment:
Q  291 caaaataacttatgcaaataaataagtttttatatattattcataagtttgt 342  Q
    ||||| |||||||||||||||||||| |||||| |||||| |||||| ||||    
T  1054 caaaacaacttatgcaaataaataagcttttatttattatccataagattgt 1105  T

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Target: scaffold1367; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 292 - 325
Target Start/End: Complemental strand, 1204 - 1171
Alignment:
Q  292 aaaataacttatgcaaataaataagtttttatat 325  Q
    ||||||||||||||||||||||||| ||||||||    
T  1204 aaaataacttatgcaaataaataagcttttatat 1171  T

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Target: scaffold0012 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 297 - 340
Target Start/End: Original strand, 178502 - 178545
Alignment:
Q  297 aacttatgcaaataaataagtttttatatattattcataagttt 340  Q
    |||||||||||||||||||| |||||| ||||||| ||||||||    
T  178502 aacttatgcaaataaataagcttttatgtattatttataagttt 178545  T

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Target: scaffold0332 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0332
Description:

Target: scaffold0332; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 299 - 340
Target Start/End: Complemental strand, 14828 - 14787
Alignment:
Q  299 cttatgcaaataaataagtttttatatattattcataagttt 340  Q
    ||||| |||||||||||| |||||| ||||||||||||||||    
T  14828 cttatacaaataaataagcttttatgtattattcataagttt 14787  T

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Target: scaffold0057 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 301 - 342
Target Start/End: Complemental strand, 43896 - 43855
Alignment:
Q  301 tatgcaaataaataagtttttatatattattcataagtttgt 342  Q
    ||||||||||||||||||||||| ||||||||| ||| ||||    
T  43896 tatgcaaataaataagtttttatgtattattcaaaagcttgt 43855  T

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Target: scaffold0048 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0048
Description:

Target: scaffold0048; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 299 - 340
Target Start/End: Original strand, 59272 - 59313
Alignment:
Q  299 cttatgcaaataaataagtttttatatattattcataagttt 340  Q
    ||||||||||||||||||||||||  ||||||| ||||||||    
T  59272 cttatgcaaataaataagtttttaagtattatttataagttt 59313  T

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Target: scaffold1088 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold1088
Description:

Target: scaffold1088; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 290 - 342
Target Start/End: Original strand, 1289 - 1341
Alignment:
Q  290 gcaaaataacttatgcaaataaataagtttttatatattattcataagtttgt 342  Q
    |||||| ||||||||||||| ||||||  || |||||||||| ||||||||||    
T  1289 gcaaaacaacttatgcaaatgaataaggattaatatattatttataagtttgt 1341  T

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Target: scaffold0100 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0100
Description:

Target: scaffold0100; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 300 - 336
Target Start/End: Complemental strand, 38533 - 38497
Alignment:
Q  300 ttatgcaaataaataagtttttatatattattcataa 336  Q
    |||||||||||||||||||||||| ||||||| ||||    
T  38533 ttatgcaaataaataagtttttatgtattatttataa 38497  T

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Target: scaffold0004 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 300 - 340
Target Start/End: Complemental strand, 242720 - 242680
Alignment:
Q  300 ttatgcaaataaataagtttttatatattattcataagttt 340  Q
    |||||||||||||||||||||||| ||||||  ||||||||    
T  242720 ttatgcaaataaataagtttttatgtattatatataagttt 242680  T

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