View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3234_high_10 (Length: 424)
Name: NF3234_high_10
Description: NF3234
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3234_high_10 |
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Alignment Details
Target: chr2 (Bit Score: 380; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 33 - 420
Target Start/End: Complemental strand, 43416283 - 43415896
Alignment:
| Q |
33 |
tataacactaacatttcagattgaaagcgttatatgcgtgtctgtgtccggtgttgatgtttcatagtcgataactggatggataagcaaaatcaaagca |
132 |
Q |
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| T |
43416283 |
tatagcactaacatttcagattgaaagcgttatatgcgtgtctgtgtccggtgttgatgtttcatagtcgataactggatggataagcaaaatcaaagca |
43416184 |
T |
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| Q |
133 |
atctattgaagaacatgttgcaaaaacaagtagaaaaagacactactgatattcatggatgttgccttcaacaacattgccatcatacaacttggttaat |
232 |
Q |
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| T |
43416183 |
atctattgaagaacatgttgcaaaaacaagtagaaaaagacactactgatattcatggatgttgccttcaacaacattgccatcatacaacttggttaat |
43416084 |
T |
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| Q |
233 |
gagtcaatattgttccattccatgtaaatcaaatatagacagttcgacacatgtccagtgaaaagttgagggttgactttgttattagaaaatgggtaag |
332 |
Q |
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| T |
43416083 |
gagtcaatattgttccattccatgtaaatcaaatatagacagttcgacacatgtccagtgaaaagttgagggttgactttgttattagaaaatgggtaag |
43415984 |
T |
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| Q |
333 |
agagaactgttctatttacagtcaaaatcagttgtgaccactctctcttattcagttatttgttactacttacttccctttgctactc |
420 |
Q |
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| T |
43415983 |
agagaactgttctatttacagtcaaaatcagttgtgaccactctctcttattcagttatttgttactacttacttccctttgccactc |
43415896 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 279 - 381
Target Start/End: Complemental strand, 43401230 - 43401127
Alignment:
| Q |
279 |
acacatgtccagtgaaaagttgaggg-ttgactttgttattagaaaatgggtaagagagaactgttctatttacagtcaaaatcagttgtgaccactctc |
377 |
Q |
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| T |
43401230 |
acacatgtccaatgaaaagttgaggggttgactttgttattaaaaaatagataagagggaaccgttctgtttaaattcaaaatcagttgtgaccactctc |
43401131 |
T |
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| Q |
378 |
tctt |
381 |
Q |
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|||| |
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| T |
43401130 |
tctt |
43401127 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 209 - 291
Target Start/End: Complemental strand, 43403697 - 43403617
Alignment:
| Q |
209 |
ttgccatcatacaa--cttggttaatgagtcaatattgttccattccatgtaaatcaaatatagacagttcgacacatgtccagt |
291 |
Q |
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| T |
43403697 |
ttgccatcatacaattcttggctaacaagtcactgttgttccattccatgtaaatc----attgacagatcgacacatgtccagt |
43403617 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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