View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3234_high_12 (Length: 413)
Name: NF3234_high_12
Description: NF3234
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3234_high_12 |
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Alignment Details
Target: chr2 (Bit Score: 210; Significance: 1e-115; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 148 - 409
Target Start/End: Complemental strand, 24035066 - 24034805
Alignment:
| Q |
148 |
gacattaatttgctaaggatttagacattgaagaaattatatataagaggtccaatattcgatcgatctcttatacaaacatctacctatnnnnnnnnnn |
247 |
Q |
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| T |
24035066 |
gacattaatttgctaaggatttagacattgaagaaattatatataagaagtccaatattcgatcgatctcttatacaaacatctacctatgaaaaagaaa |
24034967 |
T |
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| Q |
248 |
nnctaaacttgaacatcaccatctttgaccttgcaatcattctccacttcttcatcacaaaccataaccttagccccaacccctccaacttcaacatctc |
347 |
Q |
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| T |
24034966 |
aactaaacttgaacatcaccatctttgaccttgcaatcattctccacttcttcatcacaaaccataaccttagccccaacgcctccaacttcaacatctc |
24034867 |
T |
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| Q |
348 |
tactcatacaccgacgacaccgacgtttcacccatccaaaacaacctctacctttgctactc |
409 |
Q |
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| T |
24034866 |
tactcatacatcgacgacaccgacgtttcacccatccaaaacaacctctacctttgatactc |
24034805 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 50 - 104
Target Start/End: Complemental strand, 24035194 - 24035140
Alignment:
| Q |
50 |
aatcaaaatgactaattccaaattttactttgaaaattttaaaataacattcata |
104 |
Q |
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| T |
24035194 |
aatcaaaatgcctaattccaaattttactttgaaaattttaaaataatattcata |
24035140 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 101 - 129
Target Start/End: Complemental strand, 24035100 - 24035072
Alignment:
| Q |
101 |
catataaattccctcccacaagtaaattg |
129 |
Q |
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| T |
24035100 |
catataaattccctcccacaagtaaattg |
24035072 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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