View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3234_high_13 (Length: 405)
Name: NF3234_high_13
Description: NF3234
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3234_high_13 |
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Alignment Details
Target: chr4 (Bit Score: 144; Significance: 1e-75; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 1 - 195
Target Start/End: Complemental strand, 46276356 - 46276166
Alignment:
| Q |
1 |
cagcaaagaaagagaccaaattttatactgtatttgttcagagtatcaactgcactgccactccctctcgtgtggtgtggctgatttgtgtcttcttatt |
100 |
Q |
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| T |
46276356 |
cagcaaagaaagataccaaattttatactgtatttgttcagagtatcaactgcactgccactccctctcgtgtggtgtggctgatttgtgtcttcttatt |
46276257 |
T |
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| Q |
101 |
tctaccaaagaaagaatctataaagtttcaatttcacaacaggaataattttcannnnnnnncttctaaatttcctgttaaataataagaattta |
195 |
Q |
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| T |
46276256 |
tctaccaaagaaagaatctataaagtttcaatttcacaacagg---aattttca-tttttttcttctaaatttcctgttaaataataataattta |
46276166 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 136; E-Value: 8e-71
Query Start/End: Original strand, 242 - 385
Target Start/End: Complemental strand, 46276052 - 46275909
Alignment:
| Q |
242 |
aaatgcattgggacgcaagaaactagggttaaacgcttatctaagcattgtgtaacttgtgacttgtaaggggtactgcaatacaacaaatattccaacc |
341 |
Q |
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| T |
46276052 |
aaatgcattgggacgcaagaaactagggttaaacgcgtatctaagcattgtgtaatttgtgacttgtaaggggtactgcaatacaacaaatattccaacc |
46275953 |
T |
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| Q |
342 |
ttttacacaatagaactttagacatcctataaatcaagataata |
385 |
Q |
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| T |
46275952 |
ttttacacaatagaactttagacatcctataaatcaagataata |
46275909 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 192 - 243
Target Start/End: Complemental strand, 46276133 - 46276082
Alignment:
| Q |
192 |
tttagattatacggtgagatgttattcgaacgcacgaatactcagaagctaa |
243 |
Q |
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| T |
46276133 |
tttagattatacggtgagatgttattcgaacgcacgaatactcagaagctaa |
46276082 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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