View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3234_high_20 (Length: 368)
Name: NF3234_high_20
Description: NF3234
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3234_high_20 |
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Alignment Details
Target: chr3 (Bit Score: 326; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 9 - 350
Target Start/End: Original strand, 48611844 - 48612185
Alignment:
| Q |
9 |
agcagagaattcgtggacttgtgttattcaattcctatccatcatggcccaaggctacgctacaatatgcataaggaatcccacaacatgcattgccaaa |
108 |
Q |
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| T |
48611844 |
agcagagaattcgtggacttgtgttattcaattcctatccatcatggcccaaggctaatctacaatatgcataaggaatcccacaacatgcattgccaaa |
48611943 |
T |
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| Q |
109 |
gttagctatctattactattagtgccctgataatgtggatagagacatcaaagaggagaagaagaacaaagaaggaaaataaaaggacacactttggaga |
208 |
Q |
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| T |
48611944 |
gttagctatctattactattagtgccctgataatgtggatagagacatcaaagaggagaagaagaacaaagaaggaaaataaaaggacacactttgcaga |
48612043 |
T |
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| Q |
209 |
ataatgatatgaaaactgtacaataaacatatatttaacttaattggacattacttataaaaccaaaaccaaaactcaggctcaactcagtaaagcaaat |
308 |
Q |
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| T |
48612044 |
ataatgatatgaaaactgtacaataaacatatatttaacttaattggacattactaataaaaccaaaaccaaaactcaggctcaactcagtaaagcaaat |
48612143 |
T |
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| Q |
309 |
aattaagttaaatacatttttgttcctataaaatacactttt |
350 |
Q |
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| T |
48612144 |
aattaagttaaatacatttttgttcctataaaatacactttt |
48612185 |
T |
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